Tuesday, August 11, 2020


Nearly 60 different types of fish found in Chicago waterways, study shows

by Michael Hawthorne

Credit: CC0 Public Domain
Amazing what can happen when a city stops dumping massive amounts of bleach into its waterways.

Nearly 60 different types of fish are swimming in the Chicago and Calumet rivers these days, up from fewer than 10 during the early 1980s, according to a new study of sampling conducted by the Metropolitan Water Reclamation District 
Common carp are still the species found most frequently by district biologists during their annual monitoring of the rivers and connected channels. Last year they pulled a nearly 40-pound carp swollen with eggs out of the Little Calumet River.

But since 2001, biologists also have found 19 other species in the waterways for the first time, only one of which wasn't native to the area, the study found.

Among those netted were bluegill, catfish, largemouth bass and yellow perch—species less tolerant to pollution than carp that European immigrants deliberately introduced across the nation during the 19th century.

More robust and diverse populations of fish—scientists call them assemblages—are examples of how a long fight to clean up the rivers is paying off after decades when regional leaders turned them into industrialized sewage canals.

"Actions we're taking are working," said Austin Happel, a research biologist at the Shedd Aquarium and chief author of the new study. "We're already seeing that if you can increase fish diversity, you're also able to increase how people use waterways."

The most dramatic improvements in fish populations occurred after 1984, when the district that collects waste from Chicago and the Cook County suburbs stopped releasing sewage treated with germ-killing chlorine into local waterways.

Chlorine also is highly toxic to fish.


Most other cities that rely on chlorine strip out the chemical before pumping treated sewage into rivers and lakes. Chicago skipped that step because for years its waterways were exempt from the toughest provisions of the Clean Water Act, a 1972 federal law that made it a national goal for all water bodies to be safe enough for fishing and swimming.

Two years before Congress overrode President Richard Nixon's veto of the law, people snickered when Mayor Richard J. Daley said he wanted the Chicago River safe enough for office workers to fish for their lunch. "They can eat fish and have a bottle of beer," the mayor told a congressional committee.

Few thought that would ever happen. Chicago had reversed its flow during the beginning of the last century and blasted through the subcontinental divide separating the Great Lakes and Mississippi River watersheds, literally walling off the city's waste from its source of drinking water while linking two of the continent's major shipping routes.

"The only time the river has a healthy color is on St. Patrick's Day, when the Democrats dye it green with food coloring," the sportswriter Rick Telender wrote in 1977.

Daley and his allies secured billions of dollars set aside by Congress to clean up rivers and lakes. Much of the local share was earmarked for the Deep Tunnel, a $3 billion system of giant tunnels and reservoirs intended to prevent flooding and keep pollution out of waterways and Lake Michigan.

By the mid-1980s, the tunnels had helped reduce oxygen-depleting pollution in the waterways, and the district installed stations on the Cal-Sag Channel to aerate its once-sluggish current, making it more hospitable to fish and other aquatic life.

"Improvements definitely were more dramatic in those earlier years after the tunnels came on line and they stopped chlorinating," said Dustin Gallagher, a district biologist who co-wrote the new study with the Shedd's Happel. "Over the years we are seeing more bluegill and more largemouth bass and steadily larger game fish—all good signs."

Providing suitable places for fish to reproduce and thrive remains a problem in stretches of local waterways that were dredged and lined with thick sheet metal a century ago, Gallagher noted. One potential solution came from biologists from the Shedd and activists who built floating, plant-filled structures in a lightly trafficked channel along Goose Island.

Other significant challenges remain. The Chicago Tribune has reported that billions of gallons of bacteria-laden sewage and runoff still routinely pour into local waterways during and after storms. District leaders have acknowledged that sewage dumping likely will continue across most of Cook County even after the last reservoir connected to Deep Tunnel is completed in 2029.

Chronic sewage dumping, referred to as "sewer overflows" by government officials, threatens the health of the river. Past studies have shown how sewage and other forms of pollution can suffocate fish by quickly reducing oxygen levels in water.

Ongoing abuse of local waterways also is a major reason why the amount of disease-causing bacteria in the water remains staggeringly high, even after the district began sanitizing sewage again.

Monthly testing reveals routine violations of water quality standards in stretches of the waterway that federal and state officials have declared should be clean enough to prevent kayakers, rowing teams and boaters from suffering diarrhea and other gastric ailments.

Along the Riverwalk at Wells Street, fecal coliform levels this year spiked as high as 51,000 colony-forming units per 100 milliliters of water—255 times higher than the state standard of 200 CFUs. Bacteria levels at Wells have averaged 500 CFUs so far this year, district records show.

Just because the water might cause people gastrointestinal distress doesn't make it harmful to fish.

Most of the fish in the Chicago River and its connected channels are safe to eat, though the state advises people to limit consumption of certain species to avoid highly toxic chemicals known as PCBs, another legacy from a century of industrial pollution.

Changing views about local waterways are perhaps best summarized by "The Jetty," a section of the Riverwalk just west of Wells.

It features concrete and metal piers surrounded on two sides by floating gardens. You can walk to the water's edge and cast a line in the shadow of Loop skyscrapers—four decades after the first Mayor Daley mused about it.


Explore furtherChicago waterways—still flowing after over 100 years

©2020 Chicago Tribune


LOTS OF FISH!
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Stronger rains in warmer climate could lessen heat damage to crops, says study


by Earth Institute at Columbia University
Farmland in eastern Oklahoma, part of the study area. Credit: Kevin Krajick/Earth Institute, Columbia University.

Intensified rainstorms predicted for many parts of the United States as a result of warming climate may have a modest silver lining: they could more efficiently water some major crops, and this would at least partially offset the far larger projected yield declines caused by the rising heat itself. The conclusion, which goes against some accepted wisdom, is contained in a new study published this week in the journal Nature Climate Change.


Numerous studies have projected that rising growing-season temperatures will drastically decrease yields of some major U.S.crops, absent adaptive measures. The damage will come from both steadily heightened evaporation of soil moisture due to higher background temperatures, and sudden desiccation of crops during heat waves. Some studies say that corn, which currently yields about 13 billion bushels a year and plays a major role in the U.S. economy, could nosedive 10 to 30 percent by the mid- to late century. Soy-the United States is the world's leading producer-could decline as much as 15 percent.

Since warmer air can hold more moisture, it is also projected that rainfall will in the future come more often in big bursts, rather than gentle downpours-a phenomenon that is already being observed in many areas. Many scientists have assumed that more extreme rains might further batter crops, but the new study found that this will probably not be the case. The reason: most of the projected heavier downpours will fall within a range that benefits crops, rather than passing the threshold at which they hurt them.

"People have been talking about how more extreme rain will damage crops," said lead author Corey Lesk, a Ph.D. student at Columbia University's Lamont-Doherty Earth Obsevatory. "The striking thing we found was, the overall effect of heavier rains is not negative. It turns out to be good for crops."

That said, the effects will probably be modest, according to the study. It estimates that corn yields could be driven back up 1 or 2 percent by the heavier rains, and soy by 1.3 to 2.5 percent. These increases are dwarfed by the potential losses due to heat, but even a few percent adds up when dealing with such huge quantities of crops. And, the researchers say, "Our findings may help identify new opportunities for climate-adaptive crop management and improved modeling."
A new study finds that when rain comes down mainly as drizzle, yields of major crops are depressed; when downpours are heavier, yields rise, up a point. Yields go down severely with the most extreme rainfalls, but these are quite rare. Length of bars represents impact on crops per hour. Heavy rainfall is projected to increase more than extremes in the future, giving a boost to crops. Credit: Corey Lesk.

The team reached their conclusions by studying hour-by-hour rainfall patterns recorded by hundreds of weather stations in the agricultural regions of the U.S. West, South and Northeast each year from 2002 to 2017. They then compared the rainfall patterns to crop yields. They found that years with rains of up to about 20 millimeters an hour-roughly the heaviest downpour of the year on average-resulted in higher yields. It was only when rains reached an extreme 50 millimeters an hour or more that crops suffered damage. (20 millimeters an hour is about three-quarters of an inch; 50 is about 2 inches.) Moreover, years in which rain came mainly as mere drizzle actually damaged yields.


The researchers outlined several possible reasons for the differences. For one, drizzle may be too inefficient to do much good. In hot weather, it can mostly evaporate back into the air before reaching subsurface root zones where it is needed; in cooler weather, it might remain on leaves long enough to encourage the growth of damaging fungi. "There are only a fixed number of hours of rain you can get in a season," said Lesk. "If too much of them are taken up by useless drizzle, it's wasted."

Heavier storms on the other hand, are better-at least up to a point. These allow water to soak thoroughly into the soil, carrying in both moisture and artificial fertilizer spread on the surface. It is only the most extreme events that hurt crops, say the researchers: these can batter plants directly, wash fertilizer off fields, and saturate soils so thoroughly that roots cannot get enough oxygen.

To study the effects of future potential rainfall patterns, the researchers used basic physical models to estimate how much heavier rains might become under different levels of warming. They found that in most cases, more rain would, as expected, come in bigger downpours-but these heavier rains would fall within the fairly wide range where they are beneficial. The most extreme, damaging rains would also increase-but would still be rare enough that the greater number of beneficial rainfalls would outweigh their effects.

Because the study averaged out statistics over vast areas, and many other factors can affect crop yields, it would be hard to say exactly what the effects of future rainfall will be in any one area, said Lesk. "No single farmer would use a study like this to make decisions on what to plant or how," he said. But, as the paper concludes, the results "suggest that beyond extreme events, the crop yield response to more common rainfall intensities merits further attention."


Explore further

More information: Lesk, C., Coffel, E. & Horton, R. Net benefits to US soy and maize yields from intensifying hourly rainfall. Nat. Clim. Chang. (2020). doi.org/10.1038/s41558-020-0830-0
Journal information: Nature Climate Change


Provided by Earth Institute at Columbia University




Decline in plant breeding programs could impact food security
by Scott Weybright, Washington State University
A team of scientists led by Kate Evans, a Washington State University horticulture professor who leads WSU's pome fruit (apples and pears) breeding program, found that public plant breeding programs are seeing decreases in funding and personnel. Credit: WSU

Public plant breeding programs are declining across the United States.


A team of scientists led by Kate Evans, a Washington State University horticulture professor who leads WSU's pome fruit (apples and pears) breeding program, found that public plant breeding programs are seeing decreases in funding and personnel.

The study was published in the journal Crop Science.

Evans and her colleagues conducted a survey of 278 plant breeding programs around the country. Public programs are chiefly federal programs, like those run by the U.S. Department of Agriculture, or based at public research universities.

In the surveys, respondents estimated a 21.4% decline in full time employee (FTE) time for program leaders over the past five years and an estimated 17.7% decline in FTE time for technical support personnel.

The researchers also found that retirement looms for a significant number of plant breeding program leaders. Over a third of the responding programs reported having leaders over the age of 60 and 62% are led by people over 50.

This decline is concerning because plant breeding has a direct impact on food security, Evans said.

"Plant breeding plays a fundamental part of the long-term food security of this country," Evans said. "The tremendous increases in food production over the past century are largely due to plant breeding, and the world's population is only increasing."

The focus on food security has received more attention in the last few months, as the COVID-19 pandemic has moved around the world, she said.

"Plant breeding is a long-term, sustainable way to address concerns over having enough food and keeping our food sources secure," said Evans, who is based at WSU's Tree Fruit Research & Extension Center in Wenatchee.

Plant breeding takes on many forms, from breeding disease tolerance, increasing production, introducing new delicious varieties, or improving drought tolerance.

"It could be a disease, a pest, climate change, any number of things," Evans said. "We do not live in a stable environment, and there are many different ways to deal with that."

Plant pathogens, like bacteria, and pests are always adapting, so varieties of crops that were bred to naturally fight off a disease start to lose their defenses. Plant breeding programs help growers stay ahead of those potentially harmful adaptations.

Another impact of declining breeding programs is losing those with a local focus.

"In Washington, for example, our cereal breeding programs are very focused on local production," Evans said. "They breed wheat that grows very well for eastern Washington."

Another example is the citrus industry. Citrus greening disease has been devastating to growers, particularly in Florida, when trees produce bitter, green, and misshapen fruit. Plant breeding programs are working hard to develop varieties that naturally repel the pest that causes the problems.

One reason that plant breeding programs are declining is expense. It takes many years to develop a new variety of a crop, Evans said. And funding a program for that long requires significant investment.

"We can't rely on grants because those are often only for a few years," she said. "You can't do anything in plant breeding in three years, it requires long-term sustained funding to get a program going."


Explore furtherNew software supports decision-making for animal and plant breeders

More information: Michael T. Coe et al, Plant Breeding Capacity in U.S. Public Institutions, Crop Science (2020). DOI: 10.1002/csc2.20227

Seeing chemical reactions with music


by Institute for Basic Science
(Top) Sound-controlled spatiotemporal patterns. Schematic representation of experimental setup used for sound-controlled spatiotemporal pattern generation. For pattern generation experiments, O2-sensitive methyl viologen (MV2+/MV+* ) redox couple (left) or CO2-sensitive pH indicator bromothymol blue (BTB) is used. (Middle) Patterns generated in different conditions. Patterns generated in Petri dishes on application of 40 Hz (left) and 80 Hz (middle) sound. A pattern generated with a square porcelain dish at 40 Hz (right). (Bottom) Sound-controlled pH-specific domains and spatiotemporal patterns. Time-dependent changes during pattern generation with a pH indicator (BTB) placed in a CO2-exposed Petri dish in the presence of 40 Hz sound. Coexistence of pH-specific spatiotemporal domains in a BTB pattern (middle). Credit: IBS

Albert Einstein once said, "I see my life in terms of music." Perhaps inspired by his words, scientists at the Center for Self-assembly and Complexity (CSC), within the Institute for Basic Science (IBS, South Korea) now see chemical reactions in the presence of music. The IBS research team has reported that audible sound can control chemical reactions in solution by continuously supplying energy sources into the interface between air and the solution. The sound-controlled air-liquid chemical interactions 'painted' intriguing and aesthetic patterns on the surface and bulk of the solution.


"The Pied Piper of Hamelin tells the mythological story of a pied piper who lured rats away from the city of Hamelin by enchanting them with the music from his magical pipe. With music working like a fuel for such artistic control in chemistry, our study has shown that even synthetic molecules can exhibit life-like behavior—listening and following a musical track," says Dr. Rahul Dev Mukhopadhyay, the co-first and -corresponding author of the study.

Music (or audible sound with a frequency range of 20 to 20,000 Hz) in fact finds useful applications in various fields, such as boosting plant cultivation or livestock breeding and even for therapeutic purposes. Ultrasound (greater than 20,000 Hz) has long been used as an essential tool in medical diagnosis. However, audible sound has rarely been associated with chemical reactions due to its low energy. Previous studies have usually focused only on its effect on the movement of water surface.

In this study, the IBS research team has gone further than that. They hypothesized that sound-generated water waves may fuel chemical reactions between air and liquid. "In fact, one aspect of a climate change study is about how CO2 concentration in the ocean changes depending on the movement of ocean waves. In retrospect, it makes sense that a wavy ocean is a more suitable condition for CO2 to be absorbed in the ocean than a still ocean. Our study has revealed the function of audible sound as a source for controlling chemical reactions, which occurs all around us, but has not been noticed till now," explains Dr. Hwang Ilha, the co-first and -corresponding author of the study.

PlayPattern generation with methyl viologen redox couple at 40 Hz. The video is played 20 times faster than real time. Credit: IBS

In their experimental set-up, the water was placed on a Petri dish and positioned on top of a speaker. When sound was played through the speaker, different surface wave patterns were generated—depending on the frequency and the amplitude of the audible sound source and the geometry of the vessel. To see how this vibrating air-water interphase controls the dissolution of atmospheric gases like oxygen or carbon dioxide into water, the researchers used O2-sensitive methyl viologen (MV2+/MV+ ) redox couple and CO2-sensitive pH indicator bromothymol blue (BTB).


Organic molecule methyl viologen is normally colorless or white, but turns deep blue upon chemical reduction. When a blue-colored solution of reduced methyl viologen in a Petri dish was exposed to air with sound playing, some regions of the solution slowly turned colorless. The sound waves generates oscillation of the fluid, prompting a streaming effect, and the solution underwent a distinct observable color change due to the gradual dissolution of atmospheric oxygen. Those not affected by the streaming retained their blue color. In the absence of sound, the uncontrolled dissolution of oxygen and natural convection currents of chemicals in solution resulted in a random pattern, which was different each time over the repetition of the same experiment. However, when the same solution was exposed to low frequency sounds below 90 Hz, very interesting and aesthetic patterns were generated. More specifically, two counter-rotating vortices emerged in blue and white contrast in the presence of 40 Hz sound. The same pattern repeated in the same condition during subsequent cycles.

The experiment indicates the reaction with oxygen, which is determined whether the solution is colorless or blue. In other words, by applying sound to a solution, the researchers could control the local molecular concentrations of oxygen in different regions that compose the same solution. Just like the surface waves, the patterns vary according to the frequency of the applied sound as well as the shape of the dish. The patterns also exhibited self-healing behavior, i.e., they recover their original pattern structure after being manually disturbed.

This concept was further extended to the dissolution of carbon dioxide gas using a pH indicator (bromothymol blue, BTB). BTB has a blue color in basic conditions (pH over 7.6), green color in neutral conditions (pH 6.0 to 7.6), and a yellow color in acidic conditions (pH under 6.0). Sound assisted dissolution of carbon dioxide in water turns it acidic due to the formation of carbonic acid. Therefore, when a blue-colored basic solution of BTB is exposed to carbon dioxide, the solution gradually turns green and eventually changes to yellow. During this process, if the solution is exposed to audible sound, a three-colored pattern having two vortices was generated. Interestingly, the pattern represents the coexistence of acidic, neutral, and basic domains in a solution. "Our study visualized a chemical environment that is partitioned into different molecular environments without any physical barrier, resembling cellular microenvironments. This is a novel discovery that may replace the common sense belief that the pH of a solution is uniform throughout all of the vessel," notes Dr. Hwang.

Extending the concept beyond simple molecules, the researchers utilized their strategy to program the organization of organic molecules within solution. In all cases, the sound generated organic aggregate patterns were obtained transiently and maintained only in presence of a steady supply of chemical fuel, which may be either a reducing agent or a base. This type of behavior is generally exhibited by intracellular biochemical processes which are maintained with a steady supply of fuels or energy currencies, such as adenosine-5'-triphosphate (ATP) or guanosine-5'-triphosphate (GTP).

Prof. Kimoon Kim, Director of the IBS Center for Self-assembly and Complexity, who supervised the overall research, added, "This is the first study to show that it is possible to control and visualize chemical reactions using audible sound. In the near future, we may further expand the scope of use of audible sound from chemistry to other fields, such as physics, fluid mechanics, chemical engineering and biology."


Explore further Nanofibers align to the sound of Beethoven and Mozart

More information: lha Hwang et al. Audible sound-controlled spatiotemporal patterns in out-of-equilibrium systems. Nature Chemistry, DOI: 10.1038/s41557-020-0516-2

Journal information: Nature Chemistry


Provided by Institute for Basic Science

July 2020 set heat records for many U.S. states


by John Bateman, NOAA Headquarters
Credit: NOAA Headquarters

It was an unusually steamy month for the country—even for July. Some states recorded their hottest July ever as others tied with previous years.


The month's precipitation was also higher than average and ranked in the wettest third of the 126-year period of record, according to scientists from NOAA's National Centers for Environmental Information.

Not to be outdone, tropical activity in the Atlantic revved up, producing three tropical storms and two hurricanes in just July alone. They were the earliest fifth, sixth, seventh, eighth and ninth named storms on record in the Atlantic Basin.

Here's a climate snapshot of the month of July and the year to date:

Climate by the numbers

July 2020

The average temperature last month across the contiguous U.S. was 75.7 degrees F (2.1 degrees above average), making July the 11th-warmest in the 126-year record.

Seven states—Connecticut (tie), Delaware, Maryland, New Hampshire, New Jersey, Pennsylvania (tie), and Virginia (tie)—reported their hottest July on record. Fourteen more states across the South and East reported a top-10 hottest July.

The average precipitation for July was 2.93 inches (0.15 of an inch above average), which ranked in the wettest third of the record. Above-average precipitation fell across much of the northern and central Plains, as well as the Great Lakes, Mississippi Valley and Gulf Coast.

Year to date/January through July 2020

The year-to-date (YTD) average temperature for the contiguous U.S. was 53.6 degrees F, which is 2.4 degrees above the 20th-century average and the seventh warmest YTD on record.

In keeping with the warm trend noted in June's report, Florida saw its hottest YTD on record by July's end.

Precipitation was plentiful across the U.S. with a total of 19.29 inches—1.20 inches above average. The YTD ranked in the wettest third of the 126-year record, with both Tennessee and West Virginia marking their fifth-wettest.

More notable climate events
H
anna hit Texas: The first hurricane of the season, Hurricane Hanna, struck Padre Island, Texas, on July 25, causing significant damage. Hanna was the earliest named "H storm" on record to form in the Atlantic.

Alaska was cool, with a few hot spots: The state had its coolest July since 2014, with an average temperature of 53.3 degrees F. Meanwhile, Kodiak had its third-warmest July since 1915, and Sitka Airport tied its all-time high temperature of 88 degrees on July 31.

Drought intensified across the U.S.: Approximately 33% of the contiguous U.S. was in drought by the end of July, up 7% from June, according to the U.S. Drought Monitor report. Drought expanded or intensified across parts of the parts of the West, South, central Plains, central Rockies, Great Lakes, Ohio Valley and Northeast.


Explore further July warmer than average, year to date 3rd warmest for Lower 48
More information: Assessing the U.S. Climate in July 2020. www.ncei.noaa.gov/news/national-climate-202007

Indonesia's Mt. Sinabung blasts tower of smoke and ash into sky





Indonesia's Mount Sinabung erupted Monday, belching a massive column of ash and smoke 5,000 metres (16,400 feet) into the air and plunging local communities into darkness with a thick layer of debris.


The volcano on Sumatra island has been rumbling since 2010 and saw a deadly eruption in 2016.

Activity had picked up in recent days, including a pair of smaller eruptions at the weekend.

There were no reports of injuries or deaths from Monday morning's blast, but authorities warned of possible lava flows and more eruptions.

"This is an alert for all of us to avoid red-zone areas near Sinabung," said Armen Putera, a local official with Indonesia's Volcanology and Geological Hazard Mitigation Centre.

However, the crater's alert status remained at its second-highest level.

No one lives inside a previously announced no-go zone around the volcano.

Small communities nearby were coated in a layer of thick ash as at least one village went from day to night in a matter of minutes.

"It was like magic—when the ash came it went from being very bright to dark as night," said Rencana Sitepu, the head of Namanteran village, adding that some of the community's crops were destroyed by the fallout.

"The village went dark for about 20 minutes."
Mount Sinabung emits ash and smoke into the air

The coronavirus pandemic complicated matters as scared residents violated safety rules.

"Locals were gathering after the eruption without using face masks because they were all panicking," said local disaster agency chief Natanael Perangin-angin.

Sinabung had roared back to life in 2010 for the first time in 400 years. After another period of inactivity, it erupted once more in 2013, and has remained highly active since.

In 2016, seven people died in one of the eruptions, while another in 2014 killed 16.


In late 2018, a volcano in the strait between Java and Sumatra islands erupted, causing an underwater landslide and tsunami which killed more than 400 people.


Indonesia is home to about 130 active volcanoes due to its position on the "Ring of Fire", a belt of tectonic plate boundaries circling the Pacific Ocean where frequent seismic activity occurs.

Explore further Indonesia's Mt. Sinabung shoots column of smoke and ash into sky

© 2020 AFP
New global study shows 'best of the last' tropical forests urgently need protection

by Northern Arizona University
Credit: CC0 Public Domain

The world's 'best of the last' tropical forests are at significant risk of being lost, according to a paper released today in Nature Ecology and Evolution. Of these pristine forests that provide key services—including carbon storage, prevention of disease transmission and water provision—only a mere 6.5 percent are formally protected.

In the study, the United Nations Development Programme (UNDP), the National Aeronautics and Space Administration (NASA), Wildlife Conservation Society and scientists from eight leading research institutions—including professor Scott Goetz, research professor Patrick Jantz and research associate Pat Burns of Northern Arizona University' School of Informatics, Computing, and Cyber Systems—identified significant omissions in international forest conservation strategies. Current global targets focus solely on forest extent and fail to acknowledge the importance of forest intactness, or structural condition, creating a critical gap in action to safeguard ecosystems essential for human and planetary well-being.

New targets that recognize forest quality are urgently needed to safeguard the Earth's precious humid tropical forests. Of the 1.9 million hectares of humid tropical forests globally, the study advocated for new protections in 41 percent of these areas, active restoration in 7 percent and reduction of human pressure in 19 percent to promote coordinated strategies to sustain forests of high ecological value.

"By serving as a convener to bring together the world's best scientists with governments, UNDP plays a critical role in ensuring that cutting-edge research is relevant for the development of key international agreements and implementation at the national level," commented Haoliang Xu, UN Assistant Secretary-General and UNDP Director of Bureau for Policy and Programme Support.

Collaborating with UNDP Country Offices and key stakeholders in Brazil, Colombia, Costa Rica, the Democratic Republic of the Congo, Ecuador, Indonesia, Peru, and Viet Nam, researchers mapped the location of high-quality forests using recently developed high-resolution maps of forest structure and human pressure across the global humid tropics.

The paper reveals that the Earth's humid tropical forests, only half of which have high ecological integrity, are largely limited to the Amazon and Congo Basins. The vast majority of these forests have no formal protection and, given recent rates of loss, are at significant risk.


With the rapid disappearance of these 'best of the last' forests at stake, the paper provides a policy-driven framework for their conservation and restoration, recommending locations to maintain protections, add new protections, restore forest structure, and mitigate human pressure.

The coming year is a so-called 'super year' for biodiversity, in which the world will agree on a new deal for nature that will shape global action for the next 30 years. Countries will also have a final chance to revise their contributions to reduce carbon emissions before the Paris Climate Agreement goes into effect. Both these milestones will impact efforts to advance the nature-based Sustainable Development Goals of the 2030 Agenda.

"The work reported in this paper is the result of a long process assessing the condition of the world's tropical forests," said Goetz, a co-author of the paper. "The breakthrough here was being able to use spaceborne satellite data to provide the first robust estimates of the structural condition of forests in three dimensions, not just forest canopy cover."

"Advances in earth observation instruments and methodologies developed by NASA and partner institutions, coupled with the use of incredibly powerful computing systems like NAU's Monsoon and Google Earth Engine, enabled a near-global mapping of tropical forest quality. We synthesized the best available earth observation datasets to map the changing condition of the Earth's tropical forests, finding that only 6.5 percent of the highest quality tropical forests are formally protected. We hope that the conservation strategies proposed as part of this international effort will be a step towards conserving high quality forests and restoring those that have been degraded," said Burns.

"Every year, research reveals new ways that old, structurally complex forests contribute to biodiversity, carbon storage, water resources, and many other ecosystem services. That we can now map such forests in great detail is an important step forward in efforts to conserve them," said Jantz.


Explore further Saving Africa's biggest trees to help Earth breathe

More information: Hansen, A.J., Burns, P., Ervin, J. et al. A policy-driven framework for conserving the best of Earth's remaining moist tropical forests. Nat Ecol Evol (2020). doi.org/10.1038/s41559-020-1274-7

Journal information: Nature Ecology & Evolution 


Provided by Northern Arizona University

Creative block of molecular evolution: Adaptive mutations repeat themselves in tiny crustaceans of Lake Baikal


by Skolkovo Institute of Science and Technology
Credit: Pavel Odinev / Skoltech

A group of scientists from Skoltech and the Institute for Information Transmission Problems of RAS (IITP RAS) showed, using Lake Baikal amphipods as an example, that parallel evolution driven by adaptations can be detected at the whole-genome level. The research was published in the Genome Biology and Evolution journal.

Similar adaptations are sometimes known to result from exactly the same mutations that occurred independently. The phenomenon is commonly termed "parallel evolution" to describe evolution that keeps repeating itself. It is usually hard to prove that such "parallel" mutations did not occur by pure accident but actually help organisms to adapt to their environment. Thus far, adaptive parallel mutations have been found in some individual genes or small groups of interrelated genes only.

A team of Skoltech and IITP RAS researchers led by Georgii Bazykin, an evolutionary biologist and a professor at Skoltech, undertook extensive bioinformatics analysis of protein-coding sequences of 46 amphipod species from Lake Baikal. The scientists were eager to see whether closely related amphipods from a Baikalian species flock displayed an elevated rate of adaptive parallel evolution.

The research suggests that adaptive parallel mutations are more common than random parallel mutations in protein-coding sequences of Lake Baikal amphipods and actually affect several thousand genes. Drawing on basic laws of molecular evolution, the scientists showed that the mutations they discovered were indeed caused by the species' need to adapt to the environment. However, the exact adaptations behind parallel evolution still remain a mystery.

"Lake Baikal is home to hundreds of species of endemic amphipods that evolved from several species in their distant ancestry and embrace a variety of ecological niches from predators to planktonic forms and parasites. Parallels were found even between forms with totally different lifestyles," says Valentina Burskaia, the first author of the study and a Skoltech Ph.D. student.

Explore furtherFoot feathering birds flock genetically together

More information: Valentina Burskaia et al. Excessive parallelism in protein evolution of Lake Baikal amphipod species flock, Genome Biology and Evolution (2020). DOI: 10.1093/gbe/evaa138

Captive beluga whales released into Iceland sea sanctuary

'AFTER FREEDOM OF THE SEA A SANCTUARY IS JUST ANOTHER NAME FOR PRISON'
MIKE FOUCAULT 

The beluga whales have moved to a sea sanctuary in Iceland after being released from a Shanghai aquarium

Two beluga whales from a Shanghai aquarium have returned to the sea in an Icelandic sanctuary, conservationists said Monday, expressing hopes of creating a model for rehoming some 300 belugas currently in captivity.

Little White and Little Grey, two 13-year-old females, left behind their previous lives entertaining visitors at the Changfeng Ocean World in June 2019 when they were flown to Iceland's Klettsvik Bay in the Westman Islands, in specially tailored containers.

On Friday, they were moved from their landbased facility to care pools in the sea at Klettsvik Bay—the first time the two belugas have been in the sea since they were taken from a Russian whale research centre in 2011, the conservation charity Sea Life Trust said in a statement on Monday.

They will stay in the care pools "for a few weeks" before they are released into the bigger sanctuary, a 32,000-square-metre (344,445-square-foot) sea pen that will become their home, organisers said.

Little Grey and Little White "will need a short period of time to acclimatise to their new natural environment and all the outdoor elements before they are released into the wider sanctuary in Klettsvik Bay," the statement said.

After having been cared for by humans for so many years, it is unlikely the belugas would survive in the wild.

The pen is thus sealed off by nets that still allow sea life, such as fish, to swim through.
The conservationists hope to create a model for rehoming some 300 beluga whales currently in captivity

'Ambassadors'

Andy Bool, the head of Sea Life Trust, said the belugas' release "was as smooth as we had hoped and planned for."

"We are carefully monitoring Little Grey and Little White with our expert care team and veterinarians," he said.

Bool said the whales were "ambassadors for the 300 other belugas that are in human care across the world."

"We hope to show that Little White and Little Grey thrive in this bay, and we're conducting a research study ... that will hopefully show that there's a welfare benefit to being in a natural environment like this.

"We hope that can then persuade others that maybe their beluga whales might be better off in a different environment," Bool said.

Ahead of their sea transfer, the whales were trained to hold their breath longer, become physically stronger to cope with tides and currents, and put on blubber to help them cope with colder water temperatures.
Ahead of their sea transfer, the whales were trained to hold their breath longer, become physically stronger to cope with tides and put on blubber to help them in colder water

The whales each weigh 900 kilogrammes (2,000 pounds) and measure four metres (13 feet).

Originally from Russian Arctic waters, it is thought they were two or three years old when captured.

Belugas typically live for 40 to 60 years.

According to Sea Life Trust, Klettsvik Bay is the world's first open water beluga sanctuary.

Klettsvik is also where Keiko, the killer whale in the 1993 film "Free Willy", was flown in 1998. The orca was fully released in 2002 but did not manage to adapt to life in the wild and died 18 months later in a Norwegian fjord.

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Third breakthrough demonstrates photosynthetic hacks can boost yield, conserve water
HACK=GMO/GE
by University of Illinois at Urbana-Champaign
A team of scientists from the University of Essex has boosted crop productivity by 27 percent by resolving two bottlenecks in photosynthesis--the process whereby plants fix carbon dioxide into the sugars that fuel crop growth. Chidi Afamefule (left) holds an unmodified control plant while Kenny Brown (center) holds a plant modified to resolve one bottleneck, and Patricia Lopez-Calcagno (right) holds a plant modified to resolve two bottlenecks. Credit: RIPE Project/Claire Benjamin

Plants are factories that manufacture yield from light and carbon dioxide—but parts of this complex process, called photosynthesis, are hindered by a lack of raw materials and machinery. To optimize production, scientists from the University of Essex have resolved two major photosynthetic bottlenecks to boost plant productivity by 27 percent in real-world field conditions, according to a new study published in Nature Plants. This is the third breakthrough for the research project Realizing Increased Photosynthetic Efficiency (RIPE); however, this photosynthetic hack has also been shown to conserve water.


"Like a factory line, plants are only as fast as their slowest machines," said Patricia Lopez-Calcagno, a postdoctoral researcher at Essex, who led this work for the RIPE project. "We have identified some steps that are slower, and what we're doing is enabling these plants to build more machines to speed up these slower steps in photosynthesis."


The RIPE project is an international effort led by the University of Illinois to develop more productive crops by improving photosynthesis—the natural, sunlight-powered process that all plants use to fix carbon dioxide into sugars that fuel growth, development, and ultimately yield. RIPE is supported by the Bill & Melinda Gates Foundation, the U.S. Foundation for Food and Agriculture Research (FFAR), and the U.K. Government's Department for International Development (DFID).
A factory's productivity decreases when supplies, transportation channels, and reliable machinery are limited. To find out what limits photosynthesis, researchers have modeled each of the 170 steps of this process to identify how plants could manufacture sugars more efficiently.

In this study, the team increased crop growth by 27 percent by resolving two constraints: one in the first part of photosynthesis where plants transform light energy into chemical energy and one in the second part where carbon dioxide is fixed into sugars.

Inside two photosystems, sunlight is captured and turned into chemical energy that can be used for other processes in photosynthesis. A transport protein called plastocyanin moves electrons into the photosystem to fuel this process. But plastocyanin has a high affinity for its acceptor protein in the photosystem so it hangs around, failing to shuttle electrons back and forth efficiently.

The team addressed this first bottleneck by helping plastocyanin share the load with the addition of cytochrome c6—a more efficient transport protein that has a similar function in algae. Plastocyanin requires copper and cytochrome requires iron to function. Depending on the availability of these nutrients, algae can choose between these two transport proteins.

At the same time, the team has improved a photosynthetic bottleneck in the Calvin-Benson Cycle—wherein carbon dioxide is fixed into sugars—by bulking up the amount of a key enzyme called SBPase, borrowing the additional cellular machinery from another plant species and cyanobacteria.
In a recent study, published in Nature Plants a team of scientists from the University of Essex boosted crop growth by 27 percent over two years of field experiments by resolving two bottlenecks in photosynthesis--the process whereby plants fix carbon dioxide into sugars that fuel crop growth and yields. This GIF shows a plant modified to resolve both bottlenecks (double), a plant modified to resolve one bottleneck (single), and an unmodified control plant. Credit: RIPE project

By adding "cellular forklifts" to shuttle electrons into the photosystems and "cellular machinery" for the Calvin Cycle, the team also improved the crop's water-use efficiency, or the ratio of biomass produced to water lost by the plant.

"In our field trials, we discovered that these plants are using less water to make more biomass," said principal investigator Christine Raines, a professor in the School of Life Sciences at Essex where she also serves as the Pro-Vice-Chancellor for Research. "The mechanism responsible for this additional improvement is not yet clear, but we are continuing to explore this to help us understand why and how this works."

These two improvements, when combined, have been shown to increase crop productivity by 52 percent in the greenhouse. More importantly, this study showed up to a 27 percent increase in crop growth in field trials, which is the true test of any crop improvement—demonstrating that these photosynthetic hacks can boost crop production in real-world growing conditions.

"This study provides the exciting opportunity to potentially combine three confirmed and independent methods of achieving 20 percent increases in crop productivity," said RIPE Director Stephen Long, Ikenberry Endowed University Chair of Crop Sciences and Plant Biology at the Carl R. Woese Institute for Genomic Biology at Illinois. "Our modeling suggests that stacking this breakthrough with two previous discoveries from the RIPE project could result in additive yield gains totaling as much as 50 to 60 percent in food crops."

RIPE's first discovery, published in Science, helped plants adapt to changing light conditions to increase yields by as much as 20 percent. The project's second breakthrough, also published in Science, created a shortcut in how plants deal with a glitch in photosynthesis to boost productivity by 20 to 40 percent.

Next, the team plans to translate these discoveries from tobacco—a model crop used in this study as a test-bed for genetic improvements because it is easy to engineer, grow, and test—to staple food crops such as cassava, cowpea, maize, soybean and rice that are needed to feed our growing population this century. The RIPE project and its sponsors are committed to ensuring Global Access and making the project's technologies available to the farmers who need them the most.


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More information: Johannes Kromdijk et al, Improving photosynthesis and crop productivity by accelerating recovery from photoprotection, Science (2016). DOI: 10.1126/science.aai8878
Journal information: Science , Nature Plants


Provided by University of Illinois at Urbana-Champaign