Tuesday, November 03, 2020

 

Covid-19 "super-spreading" events play outsized role in overall disease transmission

Mathematical analysis suggests that preventing large gatherings could significantly reduce Covid-19 infection rates.

MASSACHUSETTS INSTITUTE OF TECHNOLOGY

Research News

CAMBRIDGE, MA -- There have been many documented cases of Covid-19 "super-spreading" events, in which one person infected with the SARS-CoV-2 virus infects many other people. But how much of a role do these events play in the overall spread of the disease? A new study from MIT suggests that they have a much larger impact than expected.

The study of about 60 super-spreading events shows that events where one person infects more than six other people are much more common than would be expected if the range of transmission rates followed statistical distributions commonly used in epidemiology.

Based on their findings, the researchers also developed a mathematical model of Covid-19 transmission, which they used to show that limiting gatherings to 10 or fewer people could significantly reduce the number of super-spreading events and lower the overall number of infections.

"Super-spreading events are likely more important than most of us had initially realized. Even though they are extreme events, they are probable and thus are likely occurring at a higher frequency than we thought. If we can control the super-spreading events, we have a much greater chance of getting this pandemic under control," says James Collins, the Termeer Professor of Medical Engineering and Science in MIT's Institute for Medical Engineering and Science (IMES) and Department of Biological Engineering and the senior author of the new study.

MIT postdoc Felix Wong is the lead author of the paper, which appears this week in the Proceedings of the National Academy of Sciences.

Extreme events

For the SARS-CoV-2 virus, the "basic reproduction number" is around 3, meaning that on average, each person infected with the virus will spread it to about three other people. However, this number varies widely from person to person. Some individuals don't spread the disease to anyone else, while "super-spreaders" can infect dozens of people. Wong and Collins set out to analyze the statistics of these super-spreading events.

"We figured that an analysis that's rooted in looking at super-spreading events and how they happened in the past can inform how we should propose strategies of dealing with, and better controlling, the outbreak," Wong says.

The researchers defined super-spreaders as individuals who passed the virus to more than six other people. Using this definition, they identified 45 super-spreading events from the current SARS-CoV-2 pandemic and 15 additional events from the 2003 SARS-CoV outbreak, all documented in scientific journal articles. During most of these events, between 10 and 55 people were infected, but two of them, both from the 2003 outbreak, involved more than 100 people.

Given commonly used statistical distributions in which the typical patient infects three others, events in which the disease spreads to dozens of people would be considered very unlikely. For instance, a normal distribution would resemble a bell jar with a peak around three, with a rapidly-tapering tail in both directions. In this scenario, the probability of an extreme event declines exponentially as the number of infections moves farther from the average of three.

However, the MIT team found that this was not the case for coronavirus super-spreading events. To perform their analysis, the researchers used mathematical tools from the field of extreme value theory, which is used to quantify the risk of so-called "fat-tail" events. Extreme value theory is used to model situations in which extreme events form a large tail instead of a tapering tail. This theory is often applied in fields such as finance and insurance to model the risk of extreme events, and it is also used to model the frequency of catastrophic weather events such as tornadoes.

Using these mathematical tools, the researchers found that the distribution of coronavirus transmissions has a large tail, implying that even though super-spreading events are extreme, they are still likely to occur.

"This means that the probability of extreme events decays more slowly than one would have expected," Wong says. "These really large super-spreading events, with between 10 and 100 people infected, are much more common than we had anticipated."

Stopping the spread

Many factors may contribute to making someone a super-spreader, including their viral load and other biological factors. The researchers did not address those in this study, but they did model the role of connectivity, defined as the number of people that an infected person comes into contact with.

To study the effects of connectivity, the researchers created and compared two mathematical network models of disease transmission. In each model, the average number of contacts per person was 10. However, they designed one model to have an exponentially declining distribution of contacts, while the other model had a fat tail in which some people had many contacts. In that model, many more people became infected through super-spreader events. Transmission stopped, however, when people with more than 10 contacts were taken out of the network and assumed to be unable to catch the virus.

The findings suggest that preventing super-spreading events could have a significant impact on the overall transmission of Covid-19, the researchers say.

"It gives us a handle as to how we could control the ongoing pandemic, which is by identifying strategies that target super-spreaders," Wong says. "One way to do that would be to, for instance, prevent anyone from interacting with over 10 people at a large gathering."

The researchers now hope to study how biological factors might also contribute to super-spreading.

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The research was funded by the James S. McDonnell Foundation.

AMERICAN RACISM

Discrimination increases against Asian and Asian American population, affecting health

WASHINGTON STATE UNIVERSITY

Research News

VANCOUVER, Wash. - Reports of racial discrimination against Asians and Asian-Americans have increased since the start of the COVID-19 pandemic hit the United States, coinciding with an increase in reported negative health symptoms.

That's according to a new paper written by Washington State University researchers recently published in the journal Stigma and Health.

"When COVID hit, we were quickly hearing anecdotes on social media and in traditional media about Asian-Americans experiencing a variety of racial abuse," said Sara Waters, an assistant professor in WSU's Department of Human Development on the Vancouver campus.

To look into the scope of those anecdotes, Waters and her graduate student, Suyeon Lee, a Ph.D. candidate in WSU's Prevention Science program, created a survey. Over 400 people responded, with almost 30% saying they experienced more discrimination since the pandemic started and 40% experienced more health impacts.

"We expected that people who experience racism would report more health issues," Waters said. "But we were surprised by just how much that increased."

The racial discrimination was above and beyond the increased stress levels experienced by the general public, Waters said.

The survey contained questions about four mental and physical health outcomes: anxiety, depressive and physical symptoms, and sleep difficulties. It also asked people to provide specific examples of racial discrimination they faced. Responses ranged from microaggressions, like people glaring or changing lines at a supermarket, to more direct actions.

"Some of those were very hard to read," Waters said. "One person described walking past a group of children who told her to go back to her country and called her 'Coronavirus.' Another was threatened with a knife. Terms like 'kung flu' and 'China virus' were very common in responses. Words used often by people in leadership positions in our country are filtering down."

Experiencing those kinds of abuse impacts a person's mental and physical health in a variety of ways. For physical health, Lee and Waters asked people to rate any increases in symptoms like headaches, backaches, nausea, and other general physical maladies. For sleep difficulties, they used the established Pittsburgh Sleep Quality Index.

"Sleep can be an important indicator of mental well-being," Waters said.

One way the survey results showed people can buffer the impact that discrimination has on health is by having social support.

Respondents who reported increased discrimination, but also report having more social support, had fewer health, especially depression, symptoms.

"That's another problem. In this era of quarantine and social distancing, it can be harder to get that beneficial social support," Waters said.

The researchers conducted their survey over a few weeks in May and June, starting roughly two months after the pandemic hit the U.S.

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 AMERICAN RACISM

Study suggests increased risk of restraint use in black patients in the emergency setting

SOCIETY FOR ACADEMIC EMERGENCY MEDICINE

Research News

IMAGE

IMAGE: PATIENT VISITS AT MASSACHUSETTS GENERAL HOSPITAL (2016-2018). view more 

CREDIT: KIRSTY CHALLEN, B.SC., MBCHB, MRES, PH.D., LANCASHIRE TEACHING HOSPITALS, UNITED KINGDOM

DES PLAINES, IL -- A study published in the most recent issue of Academic Emergency Medicine (AEM), journal showed an increased risk of restraint use in Black patients compared with white patients in the emergency setting. The risk was not increased in other races or Hispanic/Latino ethnicity.

The lead author of the single-center study is Dr. Kristina Schnitzer MD, a psychiatrist in the Schizophrenia Clinical and Research Program at Massachusetts General Hospital and an instructor at Harvard Medical School. The findings of the study are discussed with two of the authors in episode 43 of AEM Early Access, a FOAMed podcast collaboration between the Academic Emergency Medicine Journal and Brown Emergency Medicine.

The increased risk of restraint was present in Black patients after controlling for other variables, including repeated visits, using a specialized regression technique. Concerning data also showed that 7-8 percent of all patients with psychosis or bipolar disorder, and six percent of all homeless patients were restrained. The study also identifies that there is an increased risk of patients to be restrained who are on public insurance or uninsured.

The study results warrant a careful examination of current practices and potential biases in utilization of restraint in emergency settings.

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ABOUT ACADEMIC EMERGENCY MEDICINE

Academic Emergency Medicine, the monthly journal of Society for Academic Emergency Medicine, features the best in peer-reviewed, cutting-edge original research relevant to the practice and investigation of emergency care. The above study is published open access and can be downloaded by following the DOI link: 10.1111/acem.14092. Journalists wishing to interview the authors may contact Stacey Roseen at sroseen@saem.org.

ABOUT THE SOCIETY FOR ACADEMIC EMERGENCY MEDICINE

SAEM is a 501(c)(3) not-for-profit organization dedicated to the improvement of care of the acutely ill and injured patient by leading the advancement of academic emergency medicine through education and research, advocacy, and professional development. To learn more, visit saem.org.

Solar cells of the future

Young researcher at FAU develops system for increasing the efficiency of organic solar cells.

UNIVERSITY OF ERLANGEN-NUREMBERG

Research News

Organic solar cells are cheaper to produce and more flexible than their counterparts made of crystalline silicon, but do not offer the same level of efficiency or stability. A group of researchers led by Prof. Christoph Brabec, Director of the Institute of Materials for Electronics and Energy Technology (i-MEET) at the Chair of Materials Science and Engineering at Friedrich-Alexander-Universität Erlangen-Nürnberg (FAU), have been working on improving these properties for several years. During his doctoral thesis, Andrej Classen, who is a young researcher at FAU, demonstrated that efficiency can be increased using luminescent acceptor molecules. His work has now been published in the journal Nature Energy.

The sun can supply radiation energy of around 1000 watts per square metre on a clear day at European latitudes. Conventional monocrystalline silicon solar cells convert up to a fifth of this energy into electricity, which means they have an efficiency of around 20 percent. Prof. Brabec's working group has held the world record for efficiency in an organic photovoltaic module of 12.6% since September 2019. The multi-cell module developed at Energie Campus Nürnberg (EnCN) has a surface area of 26 cm². 'If we can achieve over 20% in the laboratory, we could possibly achieve 15% in practice and become real competition for silicon solar cells,' says Prof. Brabec.

Flexible application and high energy efficiency during manufacturing

The advantages of organic solar cells are obvious - they are thin and flexible like foil and can be adapted to fit various substrates. The wavelength at which the sunlight is absorbed can be 'adjusted' via the macromodules used. An office window coated with organic solar cells that absorbs the red and infrared spectrum would not only screen out thermal radiation, but also generate electricity at the same time. One criterion that is becoming increasingly important in view of climate change is the operation period after which a solar cell generates more energy than was required to manufacture it. This so-called energy payback time is heavily dependent on the technology used and the location of the photovoltaic (PV) system. According to the latest calculations of the Fraunhofer Institute for Solar Energy Systems (ISE), the energy payback time of PV modules made of silicon in Switzerland is around 2.5 to 2.8 years. However, this time is reduced to only a few months for organic solar cells according to Dr. Thomas Heumüller, research associate at Prof. Brabec's Chair.

Loss of performance for charge separation

Compared with a 'traditional' silicon solar cell, its organic equivalent has a definite disadvantage: Sunlight does not immediately produce charge for the flow of current, but rather so-called excitons in which the positive and negative charges are still bound. 'An acceptor that only attracts the negative charge is required in order to trigger charge separation, which in turn produces free charges with which electricity can be generated,' explains Dr. Heumüller. A certain driving force is required to separate the charges. This driving force depends on the molecular structure of the polymers used. Since certain molecules from the fullerene class of materials have a high driving force they have been the preferred choice of electron acceptors in organic solar cells up to now. In the meantime, however, scientists have discovered that a high driving force has a detrimental effect on the voltage. This means that the output of the solar cell decreases, in accordance with the formula that applies to direct current - power equals voltage times current.

Andrej Classen wanted to find out how low the driving force has to be to just achieve complete charge separation of the exciton. To do so, he compared combinations of four donor and five acceptor polymers that have already proven their potential for use in organic solar cells. Classen used them to produce 20 solar cells under exactly the same conditions with a driving force of almost zero to 0.6 electronvolts.

Increase in performance with certain molecules

The measurement results provided the proof for a theory already assumed in research - a 'Boltzmann equilibrium' between excitons and separated charges, the so-called charge transfer (CT) states. 'The closer the driving force reaches zero, the more the equilibrium shifts towards the excitons,' says Dr. Larry Lüer who is a specialist for photophysics in Brabec's working group. This means that future research should concentrate on preventing the exciton from decaying, which means increasing its excitation 'lifetime'. Up to now, research has only focused on the operating life of the CT state. Excitons can decay by emitting light (luminescence) or heat. By skilfully modifying the polymers, the scientists were able to reduce the heat production to a minimum, retaining the luminescence as far as possible. 'The efficiency of solar cells can therefore be increased using highly luminescent acceptor molecules,' predicts Andrej Classen.

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'Transparent solar cells' can take us towards a new era of personalized energy

Scientists design novel transparent solar cells using thin silicon films, with efficient power generation

INCHEON NATIONAL UNIVERSITY

Research News

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IMAGE: SCIENTISTS HAVE BEEN DEVELOPING TRANSPARENT SOLAR CELLS THAT MAY SOON FIND THEIR USE IN ALL KINDS OF DEVICES, INCLUDING BUILDINGS, VEHICLES, CELL PHONES, AND SENSORS view more 

CREDIT: JOEL FILIPE ON UNSPLASH

Today, the imminent climate change crisis demands a shift from conventionally used fossil fuels to efficient sources of green energy. This has led to researchers looking into the concept of "personalized energy," which would make on-site energy generation possible. For example, solar cells could possibly be integrated into windows, vehicles, cellphone screens, and other everyday products. But for this, it is important for the solar panels to be handy and transparent. To this end, scientists have recently developed "transparent photovoltaic" (TPV) devices--transparent versions of the traditional solar cell. Unlike the conventionally dark, opaque solar cells (which absorb visible light), TPVs make use of the "invisible" light that falls in the ultraviolet (UV) range.

Conventional solar cells can be either "wet type" (solution based) or "dry type" (made up of metal-oxide semiconductors). Of these, dry-type solar cells have a slight edge over the wet-type ones: they are more reliable, eco-friendly, and cost-effective. Moreover, metal-oxides are well-suited to make use of the UV light. Despite all this, however, the potential of metal-oxide TPVs has not been fully explored until now.

To this end, researchers from Incheon National University, Republic of Korea, came up with an innovative design for a metal-oxide-based TPV device. They inserted an ultra-thin layer of silicon (Si) between two transparent metal-oxide semiconductors with the goal of developing an efficient TPV device. These findings were published in a study in Nano Energy, which was made available online on August 10, 2020 (ahead of the scheduled final publication in the December 2020 issue). Prof Joondong Kim, who led the study, explains, "Our aim was to devise a high-power-producing transparent solar cell, by embedding an ultra-thin film of amorphous Si between zinc oxide and nickel oxide."

This novel design consisting of the Si film had three major advantages. First, it allowed for the utilization of longer-wavelength light (as opposed to bare TPVs). Second, it resulted in efficient photon collection. Third, it allowed for the faster transport of charged particles to the electrodes. Moreover, the design can potentially generate electricity even under low-light situations (for instance, on cloudy or rainy days). The scientists further confirmed the power-generating ability of the device by using it to operate the DC motor of a fan.

Based on these findings, the research team is optimistic that the real-life applicability of this new TPV design will soon be possible. As for potential applications, there are plenty, as Prof Kim explains, "We hope to extend the use of our TPV design to all kinds of material, right from glass buildings to mobile devices like electric cars, smartphones, and sensors." Not just this, the team is excited to take their design to the next level, by using innovative materials such as 2D semiconductors, nanocrystals of metal-oxides, and sulfide semiconductors. As Prof Kim concludes, "Our research is essential for a sustainable green future--especially to connect the clean energy system with no or minimal carbon footprint."

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Reference

Authors: Sangho Kim (1,2), Malkeshkumar Patel (1,2), Thanh Tai Nguyen (1,2), Junsin Yi (3), Ching-Ping Wong (4 ), Joondong Kim (1,2)

Title of original paper: Si-embedded metal oxide transparent solar cells

Journal: Nano Energy

DOI: 10.1016/j.nanoen.2020.105090

Affiliations:

(1) Photoelectric and Energy Device Application Lab (PEDAL), Multidisciplinary Core Institute for Future Energies (MCIFE), Incheon National University, Republic of Korea

(2) Department of Electrical Engineering, Incheon National University, Republic of Korea

(3) College of Information and Communication Engineering, SungKyunkwan University, Suwon, Republic of Korea

(4) School of Materials Science and Engineering, Georgia Institute of Technology, Atlanta, United States

About Incheon National University

Incheon National University (INU) is a comprehensive, student-focused university. It was founded in 1979 and given university status in 1988. One of the largest universities in South Korea, it houses nearly 14,000 students and 500 faculty members. In 2010, INU merged with Incheon City College to expand capacity and open more curricula. With its commitment to academic excellence and an unrelenting devotion to innovative research, INU offers its students real-world internship experiences. INU not only focuses on studying and learning but also strives to provide a supportive environment for students to follow their passion, grow, and, as their slogan says, be INspired.

Website: http://www.inu.ac.kr/mbshome/mbs/inuengl/index.html

About Professor Joondong Kim

Joondong Kim is a Professor at the Department of Electrical Engineering in Incheon National University, Korea, and the head of Multidisciplinary Core Institute for Future Energies (MCIFE). He majored in electrical engineering and earned his PhD in 2006 from the University at Buffalo, State University of New York, USA. His research is focused on the design of functional materials and neo-conception devices, neuromorphic memories, photosensors, and transparent photovoltaics. He has published about 220 SCI papers and holds 150 patents.

Lizard skull fossil is new and 'perplexing' extinct species

ANOTHER AMAZING FIND IN THE MUSEUM STORAGE ROOM

UNIVERSITY OF TEXAS AT AUSTIN

Research News

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IMAGE: A CT IMAGE OF THE KOPIDOSAURUS PERPLEXUS SKULL IN LEFT LATERAL VIEW. view more 

CREDIT: SIMON SCARPETTA

In 2017, while browsing the fossil collections of Yale's Peabody Museum of Natural History, University of Texas at Austin graduate student Simon Scarpetta came across a small lizard skull, just under an inch long.

The skull was beautifully preserved, with a mouth full of sharp teeth - including some with a distinctive curve.

Much to Scarpetta's surprise, no one had studied it. Since being discovered in 1971 on a museum fossil hunting trip to Wyoming, the 52 million-year-old skull had sat in the specimen drawer.

"Lizards are small and prone to breaking apart, so you mostly get these individual, isolated fragmented bones," said Scarpetta, who is studying paleontology at the UT Jackson School of Geosciences. "Anytime you find a skull, especially when you're trying to figure out how things are related to each other, it's always an exciting find."

Scarpetta decided to bring the skull back to the Jackson School for a closer look. And on September 2020, the journal Scientific Reports published a study authored by Scarpetta describing the lizard as a new species, which he named Kopidosaurus perplexus.

The first part of the name references the lizard's distinct teeth; a "kopis" is a curved blade used in ancient Greece. But the second part is a nod to the "perplexing" matter of just where the extinct lizard should be placed on the tree of life. According to an analysis conducted by Scarpetta, the evidence points to a number of plausible spots.

The spots can be divided into two groups of lizards, representing two general hypotheses of where the new species belongs. But adding to the uncertainty is that how those two groups relate to one another can shift depending on the particular evolutionary tree that's examined. Scarpetta examined three of these trees - each one built by other researchers studying the evolutionary connections of different reptile groups using DNA - and suggests that there could be a forest of possibilities where the ancient lizard could fit.

The case of where exactly to put the perplexing lizard highlights an important lesson for paleontologists: just because a specimen fits in one place doesn't mean that it won't fit equally well into another.

"The hypothesis that you have about how different lizards are related to each other is going to influence what you think this one is," Scarpetta said.

Paleontologists use anatomical details present in bones to discern the evolutionary relationships of long-dead animals. To get a close look at the lizard skull, Scarpetta created a digital scan of it in the Jackson School's High-Resolution X-Ray CT Lab. However, while certain details helped identify the lizard as a new species, other details overlapped with features from a number of different evolutionary groups.

All of these groups belonged to a larger category known as Iguania, which includes a number of diverse species, including chameleons, anoles and iguanas. To get a better idea of where the new species might fit into the larger Iguania tree, Scarpetta compared the skull data to evolutionary trees for Iguania that were compiled by other researchers based on DNA evidence from living reptiles.

On each tree, the fossil fit equally well into two general spots. What's more, the lizard groupings in each spot varied from tree to tree. If Scarpetta had just stopped at one spot or one tree, he would have missed alternative explanations that appear just as plausible as the others.

Scarpetta said that Kopidosaurus perplexus is far from the only fossil that could easily fit onto multiple branches on the tree of life. Paleontologist Joshua Lively, a curator at the Utah State University Eastern Prehistoric Museum, agrees and said that this study epitomizes why embracing uncertainty can lead to better, more accurate science.

"Something that I think the broader scientific community should pull from this is that you have to be realistic about your data and acknowledge what we can actually pull from our results and conclude and where there are still uncertainties," Lively said. "Simon's approach is the high bar, taking the high road. It's acknowledging what we don't know and really embracing that."

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The research was funded by the Jackson School of Geosciences and the Geological Society of America.

Genomic data 'catches corals in the act' of speciation and adaptation

UNIVERSITY OF HAWAII AT MANOA

Research News

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IMAGE: A) PORITES LOBATA (YELLOW MASSIVE MORPHOLOGY) SHOWN NEXT TO PORITES COMPRESSA (BLUE-GREY BRANCHING MORPHOLOGY) SIDE BY SIDE IN THE SAME HABITAT; (B) EXAMPLE OF VARIATION IN BLEACHING SUSCEPTIBILITY OF P. COMPRESSA... view more 

CREDIT: FORSMAN, ET AL. (2020)

A new study led by the University of Hawai'i at Mānoa's Hawai'i Institute of Marine Biology (HIMB) revealed that diversity in Hawaiian corals is likely driven by co-evolution between the coral host, the algal symbiont, and the microbial community.

As coral reef ecosystems have rapidly collapsed around the globe over the past few decades, there is widespread concern that corals might not be able to adapt to changing climate conditions, and much of the biodiversity in these ecosystems could be lost before it is studied and understood. Coral reefs are among the most highly biodiverse ecosystems on earth, yet it is not clear what drives speciation and diversification in the ocean, where there are few physical barriers that could separate populations.

The team of researchers used massive amounts of metagenomic sequencing data to try to understand what may be some of the major drivers of adaptation and variation in corals.

"Corals have incredible variation with such a wide range of shapes, sizes, and colors that it's really hard for even the best trained experts to be able to sort out different species," said Zac Forsman, lead author of the study and HIMB assistant researcher. "On top of that, some corals lose their algal symbionts, turning stark white or 'bleached' and die during marine heatwaves, while a similar looking coral right next to it seems fine. We wanted to try to better understand what might be driving some of this incredible variation that you see on a typical coral reef."

Forsman and colleagues examined genetic relationships within the coral genus Porites, which forms the foundation and builds many coral reefs around the world. They were able to identify genes from the coral, algal symbionts, and bacteria that were most strongly associated with coral bleaching and other factors such as the shape (morphology) of the coral colony. They found relatively few genes associated with bleaching, but many associated with distance from shore, and colony morphologies that dominate different habitats.

"We sought out to better understand coral bleaching and place it in the context of other sources of variation in a coral species complex. Unexpectedly, we found evidence that these corals have adapted and diverged very recently over depth and distance from shore. The algal symbionts and microbes were also in the process of diverging, implying that co-evolution is involved. It's like we caught them in the act of adaptation and speciation."

"These corals have more complex patterns of variation related to habitat than we could have imagined and learning about how corals have diversified over various habitats can teach us about how they might adapt in the future," he explained. "Since variation is the raw material for adaptation, there is hope for the capacity of these corals to adapt to future conditions, but only if we can slow down the pace of loss."

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First Australian night bees recorded foraging in darkness

A new study has identified two Australian beesthat have adapted their vision at night for the first time

FLINDERS UNIVERSITY

Research News

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IMAGE: (REEPENIA BITUBERCULATAV) NOMIINE BEE WITH NIGHT FORAGING ACTIVITY view more 

CREDIT: JAMES DOREY, FLINDERS UNIVERSITY

Australian bees are known for pollinating plants on beautiful sunny days, but a new study has identified two species that have adapted their vision for night-time conditions for the first time.

The study by a team of ecology researchers has observed night time foraging behaviour by a nomiine (Reepenia bituberculata) and masked (Meroglossa gemmata) bee species, with both developing enlarged compound and simple eyes which allow more light to be gathered when compared to their daytime kin.

Published in the Journal of Hymenoptera Research, the researchers explain that this improved low-light ability could potentially also exist in other Australian species secretly active at night, with their image processing ability best observed through high-resolution close-up images.

Lead author PhD Candidate James Dorey, in the College of Science & Engineering at Flinders University, says the two Australian bee species active at night and during twilight hours are mostly found in Australia's tropical north, but there could potentially more in arid, subtropical and maybe even temperate conditions across the continent.

"We have confirmed the existence of at least two crepuscular bee species in Australia and there are likely to be many more that can forage both during the day and into the early morning or evening under low light conditions. It's true that bees aren't generally known to be very capable when it comes to using their eyes at night, but it turns out that low-light foraging is more common than currently thought," says Mr Dorey.

"Before this study, the only way to show that a bee had adapted to low-light was by using difficult-to-obtain behavioural observations, but we have found that you should be able to figure this out by using high-quality images of a specific bee."

Mr Dorey says bees that forage during dim-light conditions aren't studied enough with no previously reliable published records for any Australian species.

"Our study provides a framework to help identify low-light-adapted bees and the data that is needed to determine the behavioural traits of other species. This is important as we need to increase efforts to collect bee species outside of normal hours and publish new observations to better understand the role that they play in maintaining ecosystems."

The researchers outline why more needs to be understood about the behaviour of bee species to help protect them from the potential impacts of climate change.

"Global weather patterns are changing and temperatures in many parts of Australia are rising along with the risk of prolonged droughts and fires. So, we have to improve our understanding about insects pollinating at night or in milder parts of the day to avoid potential extinction risks or to mitigate loss of pollination services."

"This also means we have to highlight the species that operate in a narrow window of time and could be sensitive to climatic changes, so conservation becomes an important concern. Because quite frankly, we have ignored these species up until now."

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The new paper, Morphometric comparisons and novel observations of diurnal and low-light foraging bees (2020) by James B Dorey (Flinders University), Erinn P.Fagan Jeffries (University of Adelaide), Mark I. Stevens (South Australian Musuem, UniSA), Michael P. Schwarz (Flinders University) has been published in The Journal of Hymenoptera.

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IMAGE: BAISHIYA KARST CAVE view more 

CREDIT: HAN YUANYUAN

HOME OF KOOT HOOMI AND THE SECRET MASTERS

Denisovan DNA found in sediments of Baishiya Karst Cave on Tibetan Plateau

CHINESE ACADEMY OF SCIENCES HEADQUARTERS

Research NewsOne year after the publication of research on the Xiahe mandible, the first Denisovan fossil found outside of Denisova Cave, the same research team has now reported their findings of Denisovan DNA from sediments of the Baishiya Karst Cave (BKC) on the Tibetan Plateau where the Xiahe mandible was found. The study was published in Science on Oct. 29.

The research team was led by Prof. CHEN Fahu from the Institute of Tibetan Plateau Research (ITP) of the Chinese Academy of Sciences (CAS), Prof. ZHANG Dongju from Lanzhou University, Prof. FU Qiaomei from the Institute of Vertebrate Paleontology and Paleoanthropology (IVPP) of CAS, Prof. Svante Pääbo from the Max Planck Institute for Evolutionary Anthropology, and Prof. LI Bo from University of Wollongong.

Using cutting-edge paleogenetic technology, the researchers successfully extracted Denisovan mtDNA from Late Pleistocene sediment samples collected during the excavation of BKC. Their results show that this Denisovan group is closely related to the late Denisovans from Denisova Cave, indicating Denisovans occupied the Tibetan Plateau for a rather long time and had probably adapted to the high-altitude environment.

Denisovans were first discovered and identified in 2010 by a research team led by Prof. Svante Pääbo. Almost a decade later, the Xiahe mandible was found on the Tibetan Plateau. As the first Denisovan fossil found outside of Denisova Cave, it confirmed that Denisovans had occupied the roof of the world in the late Middle Pleistocene and were widespread. Although the Xiahe mandible shed great new light on Denisovan studies, without DNA and secure stratigraphic and archaeological context, the information it revealed about Denisovans was still considerably restricted.

In 2010, a research team from Lanzhou University led by Prof. CHEN Fahu, current director of ITP, began to work in BKC and the Ganjia basin where it is located. Since then, thousands of pieces of stone artifacts and animal bones have been found. Subsequent analysis indicated that the stone artifacts were mainly produced using simple core-flake technology. Among animal species represented, gazelles and foxes dominated in the upper layers, but rhinoceros, wild bos and hyena dominated in the lower layers. Some of the bones had been burnt or have cut-marks, indicating that humans occupied the cave for a rather long time.

To determine when people occupied the cave, researchers used radiocarbon dating of bone fragments recovered from the upper layers and optical dating of sediments collected from all layers in the excavated profile. They measured 14 bone fragments and about 30,000 individual grains of feldspar and quartz minerals from 12 sediment samples to construct a robust chronological framework for the site. Dating results suggest that the deepest excavated deposits contain stone artifacts buried over ~190 ka (thousand years). Sediments and stone artifacts accumulated over time until at least ~45 ka or even later.

To determine who occupied the cave, researchers used sedimentary DNA technology to analyze 35 sediment samples specially collected during the excavation for DNA analysis. They captured 242 mammalian and human mtDNA samples, thus enriching the record of DNA related to ancient hominins. Interestingly, they detected ancient human fragments that matched mtDNA associated with Denisovans in four different sediment layers deposited ~100 ka and ~60 ka.

More interestingly, they found that the hominin mtDNA from 60 ka share the closest genetic relationship to Denisova 3 and 4 - i.e., specimens sampled from Denisova Cave in Altai, Russia. In contrast, mtDNA dating to ~100 ka shows a separation from the lineage leading to Denisova 3 and 4.

Using sedimentary DNA from BKC, researchers found the first genetic evidence that Denisovans lived outside of Denisova Cave. This new study supports the idea that Denisovans had a wide geographic distribution not limited to Siberia, and they may have adapted to life at high altitudes and contributed such adaptation to modern humans on the Tibetan Plateau.

However, there are still many questions left. For example, what's the latest age of Denisovans in BKC? Due to the reworked nature of the top three layers, it is difficult to directly associate the mtDNA with their depositional ages, which are as late as 20-30 ka BP. Therefore, it is uncertain whether these late Denisovans had encountered modern humans or not. In addition, just based on mtDNA, we still don't know the exact relationship between the BKC Denisovans, those from Denisova Cave in Siberia and modern Tibetans. Future nuclear DNA from this site may provide a tool to further explore thes


Trump Closes Campaign With Bold Anti-Democracy, 
Pro-Political Violence Message

By Eric Levitz@EricLevitz
VISION 2020 NOV. 2, 2020

Block the vote. Photo: BRENDAN SMIALOWSKI/AFP via Getty Images

Donald Trump is trailing Joe Biden by 8.5 points nationally — the biggest polling deficit that any incumbent president has ever faced this late in a campaign. One major cause of Trump’s woes is his collapsing standing with self-described “moderate” voters. In 2016, Hillary Clinton won this group by 12 points; some recent polls have Biden winning it by roughly four times that margin.

But the president has a plan for expanding his coalition: He will reassure moderate skeptics by putting greater emphasis on his indifference to public health, contempt for democracy, and support for political violence.

Or at least, this is what Trump’s messaging might lead one to think. Over the past 24 hours, the president has vowed to fire Dr. Anthony Fauci, praised a caravan of Trump supporters that surrounded a Biden campaign bus in Texas and nearly ran it off the road, and argued that voters whose ballots aren’t counted on Election Night deserve to be disenfranchised.

Fauci, the government’s top infectious-disease expert, boasts a 64 percent job-approval rating, according to a recent Morning Consult survey. By contrast, approval of Trump’s handling of the coronavirus sits at just 39 percent.

And yet, at a rally in South Florida last night, when Trump’s die-hard supporters broke into a “Fire Fauci” chant, the president replied, “Don’t tell anybody, but let me wait until a little bit after the election.” This statement implies both that Trump intends to fire a widely trusted public-health official in the middle of a pandemic and that the only reason he hasn’t done so yet is that he does not want pro-Fauci voters to know his true intentions before they cast their ballots.

Although there is little polling on the subject, it seems safe to say that most Americans believe it is wrong for politicians to try to win elections by (1) declaring victory before all votes are counted, and then (2) asking partisan judges to throw out the remaining ballots. Nevertheless, Trump told reporters Monday, “I think it’s terrible when we can’t know the results of an election [on] the night of the election, in a modern-day age of computer,” going on to say that his campaign would “go in the night of [the election], as soon as that election is over” and attempt to halt the counting of absentee mail ballots.

In interviews with the New York Times, Trump advisers made his campaign’s intentions even more explicit:

Trump advisers said their best hope was if the president wins Ohio and Florida is too close to call early in the night, depriving Mr. Biden a swift victory and giving Mr. Trump the room to undermine the validity of uncounted mail-in ballots in the days after.

The president’s confidantes told the same story (with a bit more elaboration) to Axios:

Behind the scenes: Trump has privately talked through this scenario in some detail in the last few weeks, describing plans to walk up to a podium on election night and declare he has won.

For this to happen, his allies expect he would need to either win or have commanding leads in Ohio, Florida, North Carolina, Texas, Iowa, Arizona and Georgia.

Why it matters: Trump’s team is preparing to falsely claim that mail-in ballots counted after Nov. 3 — a legitimate count expected to favor Democrats — are evidence of election fraud.

Trump’s plan to exploit a partisan discrepancy in voting methods (with Democrats being more likely to cast mail-in ballots that are counted last in some key swing states) has long been clear: Over and over, the president has insinuated that he will declare himself the winner on Election Night if he is leading in partial returns — and then fight in court to halt the counting of further ballots. What is new, however, is the president and his advisers openly copping to this strategy. Further, in his remarks Monday, Trump didn’t just baselessly assert that mail ballots were rife with fraud; he also made the less factually problematic — but more openly anti-democratic — argument that last-minute mail ballots shouldn’t be counted because procrastinators don’t deserve to have their voices heard, saying, “If people wanted to get their ballots in, they should have gotten their ballots in long before that.”

Finally, on Friday, a bevy of trucks bearing Trump flags surrounded a Biden-Harris campaign bus in Texas Friday, with one vehicle pulling in front of the bus and then stopping in the middle of the highway, apparently trying to force the bus to halt, or pull off to the side of the road. This led the Biden campaign to cancel two events out of fear of political violence. The FBI has opened an investigation into the incident.

According to a new USA Today–Suffolk University Poll, three-fourths of Americans are worried about violence on Election Day. In surveys of which candidate the public trusts to better handle public safety, Biden has consistently held the advantage, with many voters apparently buying the Democratic nominee’s argument that Trump fans the flames of division and unrest.

And yet, on Sunday night, Trump said of those who nearly forced a Democratic campaign bus off the road in Texas, “In my opinion, these patriots did nothing wrong. Instead, the FBI & Justice should be investigating the terrorists, anarchists, and agitators of ANTIFA, who run around burning down our Democrat run cities and hurting our people!”

This is not the message you broadcast if you are trying to expand your minority coalition. No sane political strategist would advise a candidate to close by emphasizing his opposition to democracy, support for political violence targeting his rivals, and contempt for popular public-health officials. The fact that Trump’s advisers have told reporters that they intend to lie to the American public on Election Night — and then block the counting of votes thereafter — is even more puzzling. Perhaps they are trying to undermine the plan by discussing it on record; or perhaps they simply have no more impulse control than the president, and just felt like gabbing. Either way, to the extent that there is any strategy behind Trump’s statements, it is a strategy for retaining power through political violence and judicial malfeasance, not one for winning a free and fair election.

THE CHEAPEST COMPUTER IS A KEYBOARD

Raspberry Pi 400 is out: $70 (USD) for a complete PC with a faster Pi 4 in a keyboard

The Raspberry Pi 400 comes with 4GB RAM, a faster Raspberry Pi 4 and a built-in heatsink to keep it cool.

By Liam Tung | November 2, 2020 -- 10:43 GMT (02:43 PST) | Topic: Hardware

Lockdown surge for Raspberry Pi sales

The makers of the Raspberry Pi 4 have today unveiled the Raspberry Pi 400, a compact keyboard with an integrated 4GB RAM Raspberry 4.

The new design takes most of the work out of setting up a Raspberry Pi 4 single-board computer (SBC) as a computer, which usually requires hooking it up to a keyboard, monitor and mouse.

With the Raspberry Pi 400, just a few cables, a monitor and mouse are needed to have a basic desktop computer to start programming, surf the web, and enjoy 4K media streaming. 


Just in time for the holiday season, the Raspberry Pi 400 keyboard with a computer costs $70. Alternatively, $100 buys you the Raspberry Pi 400 Personal Computer Kit, which includes the Raspberry Pi 400, a USB mouse and USB-C power supply, an SD card with Raspberry Pi OS pre-installed, a micro HDMI cable for the display, and a Raspberry Pi Beginner's Guide.

The Raspberry Pi 4GB RAM version costs $55 by itself, and the Raspberry Pi 400 lowers the technical barrier for those who want to begin exploring programming on the low-cost computer and may inspire them to look at bigger projects using the Raspberry Pi SBC.

The Raspberry Pi 400 takes its design cue from the home computers of the 1980s that had their motherboard built into the keyboard, such as the BBC Micro, ZX Spectrum and Commodore Amiga.

Since the Raspberry Pi 400 is based on the Raspberry Pi 4, most of the computer features are the same. However, the Raspberry Pi 400's Broadcom BCM2711 quad-core Cortex-A72 (Arm v8) 64-bit SoC runs at 1.8GHz. As noted by CNX-Software, the Raspberry Pi 4's SoC runs at 1.5GHz. 

Other key differences are that the Raspberry Pi 400 only offers HDMI for audio output where as the Pi 4 SBC also has a 3.5mm audio and video jack. There's also one fewer USB 2.0 port on the Raspberry Pi 400.

The Raspberry Pi 400 does feature a horizontal 40-pin GPIO header on the rear of the keyboard, so it's possible to add physical HAT extensions, such as a camera. There's also a built-in heatsink in the Raspberry Pi 400 that's not included with the SBC.

SEE: Raspberry Pi 4: Higher-quality, faster graphics edge closer with Vulkan support via Mesa

But the Raspberry Pi 400 isn't a device for hardware hackers. As Raspberry Pi notes in the user manual: "There are no user-serviceable parts inside Raspberry Pi 400, and opening the unit is likely to damage the product and will invalidate the warranty."

Full specifications for the Raspberry Pi 400 are:
Broadcom BCM2711 quad-core Cortex-A72 – Arm v8 – 64-bit SoC at 1.8GHz
4GB LPDDR4-3200
Dual-band – 2.4GHz and 5.0GHz – IEEE 802.11b/g/n/ac wireless LAN
Bluetooth 5.0, BLE
Gigabit Ethernet
Two × USB 3.0 and 1 × USB 2.0 ports
Horizontal 40-pin GPIO header
Two × micro HDMI ports – supporting up to 4Kp60
H.265 – 4Kp60 decode; H.264 – 1,080p60 decode, 1,080p30 encode; OpenGL ES 3.0 graphics
MicroSD card slot for operating system and data storage
78- or 79-key compact keyboard, depending on regional variant
5V DC via USB connector
Operating temperature: 0°C to +50°C ambient
Maximum dimensions 286mm × 122mm × 23mm

The Raspberry Pi 400 features a horizontal 40-pin GPIO header on the rear of the keyboard, so it's possible to add physical HAT extensions, such as a camera. Image: Raspberry Pi Trading


For $100 you get the Raspberry Pi 400 Personal Computer Kit, which includes the Raspberry Pi 400, a USB mouse and USB-C power supply, an SD card with Raspberry Pi OS pre-installed, a micro HDMI cable for the display, and a Raspberry Pi Beginner's Guide. Image: Raspberry Pi Trading