Thursday, February 02, 2023

Molecular machines could treat fungal infections

Rice scientists show that light-activated nanoscale drills can kill pathogenic fungi

Peer-Reviewed Publication

RICE UNIVERSITY

researcher photo 

IMAGE: JAMES TOUR IS THE T. T. AND W. F. CHAO PROFESSOR OF CHEMISTRY AND A PROFESSOR OF MATERIALS SCIENCE AND NANOENGINEERING. (PHOTO BY JEFF FITLOW/RICE UNIVERSITY) view more 

CREDIT: PHOTO BY JEFF FITLOW/RICE UNIVERSITY

HOUSTON – (Feb.1, 2023) – That stubborn athlete’s foot infection an estimated 70% of people get at some point in their life could become much easier to get rid of thanks to nanoscale drills activated by visible light.

Proven effective against antibiotic-resistant infectious bacteria and cancer cells, the molecular machines developed by Rice University chemist James Tour and collaborators are just as good at combating infectious fungi, according to a new study published in Advanced Science.

Based on the work of Nobel laureate Bernard Feringa, the Tour group’s molecular machines are nanoscale compounds whose paddlelike chain of atoms moves in a single direction when exposed to visible light. This causes a drilling motion that allows the machines to bore into the surface of cells, killing them.

“Dr. Tour posed the question of whether they can also kill fungi, which had never been explored before,” said lead co-author Ana Santos, a Rice alumna who is currently a Marie Curie Global Postdoctoral Fellow at Fundación Instituto de Investigación Sanitaria Islas Baleares in Spain. “Our study is the first to show that, indeed, these molecules can also be effective against fungi."

Fungal infections pose a particular threat to patients with a weakened immune system, such as cancer patients and transplant recipients. The cost of treating bacterial infections in the U.S. alone is estimated at more than $7 billion per year.

COVID-19 has made matters worse. Immunosuppressants were widely used early in the pandemic to reduce the risk of long-term organ damage caused by an overactive immune system in response to the virus, a tactic that allowed fungal infections to proliferate. 

“In the aftermath of that first wave of the pandemic, doctors started seeing an increase in cases of mucormycosis, or ‘black fungus,’ a normally rare fungal infection which causes a pneumonia-like illness, as a result of the overuse of immunosuppressant drugs,” Santos said. “We want to develop a way to combat fungal infections that does not tax a weakened immune system further, and we hope these molecular machines might be a way to do so.”

Santos said overuse of antifungals in agriculture is also contributing to resistance in humans.

“This is an emergent phenomenon that we are just starting to understand,” she said. “Antifungals are used in agriculture to combat damage to crops caused by fungal infestation. However, most of the antifungal drugs that are used in agriculture are also used in humans. Therefore, overuse of antifungals can lead to resistance not just in the fungi that cause plant illnesses but also in other fungi, including those that can be harmful to humans.”

In contrast to most antifungals, development of resistance to the visible-light activated nanoscale drills was not detected. Spinning at 2-3 million times per second, their rotors cause fungal cells to disintegrate by disrupting their metabolism.

“There are only a few classes of antifungals in clinical use,” Santos said. “These conventional antifungals typically employ one of a few different mechanisms of action, including inhibiting the synthesis of the fungal cell wall, targeting the fungal cell membrane or inhibiting the production of ergosterol, which is an essential component for normal fungal cell membrane structure.

“Our molecules differ from conventional antifungals in that they specifically target what we call the powerhouses of the cell, that is, the mitochondria,” she continued. Mitochondria are responsible for producing adenosine triphosphate, or ATP, which drives cellular metabolism.

"By targeting the mitochondria, our molecules disrupt the cell's metabolism, resulting in an overall energy imbalance that leads to an uncontrolled flow of water and ions such as calcium into the cell, eventually causing the cell to explode," Santos explained.

Tour is the T. T. and W. F. Chao Professor of Chemistry and a professor of materials science and nanoengineering. Rice graduate student Jacob L. Beckham is a lead co-author on the study along with Santos.

The European Union’s Horizon 2020 program (843116), the National Science Foundation Graduate Research Fellowship Program, the Discovery Institute, the Robert A. Welch Foundation (C-2017-20190330) and the DEVCOM Army Research Laboratory (W911NF-19-2-0269, W911NF-18-2-0234) supported the research.

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Peer-reviewed paper:

“Visible-light-activated molecular machines kill fungi by necrosis following mitochondrial dysfunction and calcium overload” | Advanced Science | DOI: 10.1002/advs.202205781

https://doi.org/10.1002/advs.202205781

Authors: Ana Santos, Jacob Beckham, Dongdong Liu, Gang Li, Alexis van Venrooy, Antonio Oliver, George Tegos and James Tour

Image downloads:

https://news-network.rice.edu/news/files/2023/01/Tour_fitlow_LG.jpg
CAPTION: James Tour is the T. T. and W. F. Chao Professor of Chemistry and a professor of materials science and nanoengineering. (Photo by Jeff Fitlow/Rice University)

https://news-network.rice.edu/news/files/2023/01/Schematic-MOA-Antifungal_LG.jpg
CAPTION: Schematic representation of the mechanisms by which light-activated molecular machines kill fungi. Molecular machines bind to fungal mitochondria, decreasing adenosine triphosphate (ATP) production and impairing the function of energy-dependent transporters that control the movement of ions, such as calcium. This leads to the influx of water, which causes the organelles to swell and eventually the cells to burst. (Image courtesy of Tour Group/Rice University)

https://news-network.rice.edu/news/files/2023/01/Electron-microscopy-photo_LG.jpg
CAPTION: Ultrastructural changes induced by light-activated molecular machines in the fungus Candida albicans, detected by transmission electron microscopy, compared to a solvent control (1% dimethyl sulfoxide). (Image courtesy of Matthew Meyer, Electron Microscopy Facilities/Rice University)

Related stories:

New weapon targets antibiotic resistance:
https://news.rice.edu/news/2022/new-weapon-targets-antibiotic-resistance

Bacteria-killing drills get an upgrade:
https://news.rice.edu/news/2022/bacteria-killing-drills-get-upgrade

Chemists build a better cancer-killing drill:
https://news2.rice.edu/2019/05/28/chemists-build-a-better-cancer-killing-drill-2/

Deadly ‘superbugs’ destroyed by molecular drills:
https://news2.rice.edu/2019/12/12/deadly-superbugs-destroyed-by-molecular-drills/

Motorized molecules drill through cells:
https://news2.rice.edu/2017/08/30/motorized-molecules-drill-through-cells-2/

Links:

Tour Group: https://www.jmtour.com/
Rice Department of Chemistry: https://chemistry.rice.edu/
Wiess School of Natural Sciences: https://naturalsciences.rice.edu/

Located on a 300-acre forested campus in Houston, Rice University is consistently ranked among the nation’s top 20 universities by U.S. News & World Report. Rice has highly respected schools of Architecture, Business, Continuing Studies, Engineering, Humanities, Music, Natural Sciences and Social Sciences and is home to the Baker Institute for Public Policy. With 4,240 undergraduates and 3,972 graduate students, Rice’s undergraduate student-to-faculty ratio is just under 6-to-1. Its residential college system builds close-knit communities and lifelong friendships, just one reason why Rice is ranked No. 1 for lots of race/class interaction and No. 1 for quality of life by the Princeton Review. Rice is also rated as a best value among private universities by Kiplinger’s Personal Finance.

Babies remember faces despite face masks, UC Davis study suggests

Babies can form memories of masked faces

Peer-Reviewed Publication

UNIVERSITY OF CALIFORNIA - DAVIS

Babies learn from looking at human faces, leading many parents and childhood experts to worry about possible developmental harm from widespread face-masking during the pandemic.

A new study by researchers at the University of California, Davis, allays those concerns, finding that 6- to 9-month-old babies can form memories of masked faces and recognize those faces when unmasked.

Michaela DeBolt, a doctoral candidate in cognitive psychology, and Lisa Oakes, a professor in the Department of Psychology and at the Center for Mind and Brain, used eye tracking to study how masks influence infants’ facial recognition. 

In the study, 58 babies, each seated on a parent’s lap or in a highchair, were shown pairs of masked and unmasked women’s faces on a computer screen, while cameras recorded where they looked. Because babies linger longer over unfamiliar images, the researchers could derive which faces they recognized, DeBolt said.

The findings appear in a paper published in the January/February special issue of the journal Infancy, which focused on the impact of COVID-19 on infant development.

The testing took place at Oakes’ Infant Cognition Lab at the Center for Mind and Brain in Davis, California, from late December 2021 to late March 2022, during a statewide mask mandate and the arrival of the coronavirus omicron variant.

“When babies learned a masked face, and then they saw that face again unmasked, they recognized it,” DeBolt said.

However, when the order was reversed, babies did not show strong recognition of masked faces that they first saw unmasked. DeBolt said that was similar to her own experience of not instantly recognizing a friend who was wearing a face mask.

Learning faces is central to how babies learn to talk, perceive emotions, develop relationships with their caregivers and explore their environment, Oakes said. “So people were very worried about face masks and the effect they would have on how infants are learning about human faces.”

Oakes, an expert on cognitive development in infancy, said the study highlighted a remarkable ability of babies to adapt. “I think that it should be very reassuring to parents in general,” she said. “Babies all over the world develop and thrive.

“There are so many variations in babies’ everyday lived experience,” she added. “As long as they are well cared for and fed and they get love and attention, they thrive. We can get into a mode where we think the way we do things is the best way to do things and that anything different is going to be a problem. And that’s clearly not the case.”

Urinary tract infections impair the sex life, sleep and exercise of over half of women who experience them, and are associated with reduced quality of life, in U.S. survey


Peer-Reviewed Publication

PLOS

Activity impairment, health-related quality of life, productivity, and self-reported resource use and associated costs of uncomplicated urinary tract infection among women in the United States 

IMAGE: THE GRAPH SHOWS THE ACTIVITIES REPORTED BY SURVEY PARTICIPANTS AS THOSE MOST AFFECTED BY THEIR RECENT UNCOMPLICATED URINARY TRACT INFECTION. view more 

CREDIT: GSK, CC-BY 4.0 (HTTPS://CREATIVECOMMONS.ORG/LICENSES/BY/4.0/)

Article URL:  https://journals.plos.org/plosone/article?id=10.1371/journal.pone.0277728

Article Title: Activity impairment, health-related quality of life, productivity, and self-reported resource use and associated costs of uncomplicated urinary tract infection among women in the United States

Author Countries: USA

Funding: This study, including study design, data collection, analysis, and interpretation, and medical writing and submission support for the manuscript, was funded by GSK (study 212518). The funders had no role in study design, data collection and analysis, decision to publish, or preparation of the manuscript.

Vitamin D supplementation is associated with a reduced risk of suicide attempts in a large cohort of U.S. veterans, especially in Black veterans and those with pre-existing low vitamin D

Peer-Reviewed Publication

PLOS

The association between vitamin D serum levels, supplementation, and suicide attempts and intentional self-harm 

IMAGE: VITAMIN D SUPPLEMENTATION IS ASSOCIATED WITH A REDUCED RISK OF SUICIDE ATTEMPTS IN A LARGE COHORT OF U.S. VETERANS. view more 

CREDIT: MICHELE BLACKWELL, UNSPLASH, CC0 (HTTPS://CREATIVECOMMONS.ORG/PUBLICDOMAIN/ZERO/1.0/)

Article URL:  https://journals.plos.org/plosone/article?id=10.1371/journal.pone.0279166

Article Title: The association between vitamin D serum levels, supplementation, and suicide attempts and intentional self-harm

Author Countries: USA

Funding: This study was supported, in part, with resources from the Department of Veterans Affairs Center of Excellence for Suicide Prevention. Support for VA/CMS data was provided by the Department of Veterans Affairs, VA Health Services Research and Development Service, VA Information Resource Center (Project Numbers SDR 02-237 and 98-004), awarded to authors JG and JL. The views expressed in this article are those of the authors and do not necessarily reflect the position or policy of the Department of Veterans Affairs or the United States government.

Chronic pain-induced depression: Underlying mechanism revealed in mice, showing how ketamine acts as antidepressant in chronic pain

Chronic pain often leads to depression, which increases suffering and is clinically difficult to treat. Understanding the underlying mechanism identifies a potential therapeutic target for treatment

Peer-Reviewed Publication

UNIVERSITY OF ALABAMA AT BIRMINGHAM

Lingyong Li 

IMAGE: LINGYONG LI view more 

CREDIT: UAB

BIRMINGHAM, Ala. – Chronic pain often leads to depression, which increases suffering and is clinically difficult to treat. Now, for the first time, researchers have uncovered the underlying mechanism that drives those depressive systems, according to a study published in The Journal of Clinical Investigation.

The mechanism acts to cause hypersensitivity in a part of the brain called the anterior cingulate cortex, or ACC, and knowledge of this mechanism identifies a potential therapeutic target for the treatment of chronic pain-induced depression, say Lingyong Li, Ph.D., and Kimberley Tolias, Ph.D., co-leaders of the research.

“Chronic pain is a major, unmet health issue that impacts the quality of life,” said Li, an associate professor at the University of Alabama at Birmingham Department of Anesthesiology and Perioperative Medicine. “Unfortunately, patients suffering from chronic pain have limited effective treatment options.”

The research focused on a protein called Tiam1, which modulates the activity of other proteins that help build or unbuild the cytoskeletons of cells. Specifically, the research teams of Li and Tolias, a professor at Baylor College of Medicine, Houston, Texas, found that chronic pain in a mouse model leads to an activated Tiam1 in ACC pyramidal neurons, resulting in an increased number of spines on the neural dendrites. Dendrites are tree-like appendages attached to the body of a neuron that receive communications from other neurons.

This higher spine density increased the number of connections, and the strength of those connections, between neurons, a change known as synaptic plasticity. Those increases caused hypersensitivity and were associated with depression in the mouse model. Reversing the number and strength of connections in the model, by using an antagonist of Tiam1, relieved the mice of depression and diminished hypersensitivity of the neurons.

The ACC was already known as a critical hub for comorbid depressive symptoms in the brain. To investigate the mechanism for those symptoms, the team led by Li and Tolias first showed that Tiam1 in the ACC was activated in two mouse models of chronic pain with depressive or anxiety-like behaviors, as compared to controls.

To show that Tiam1 in the ACC modulates chronic pain-induced depressive-like behaviors, the researchers used molecular scissors to delete Tiam1 from the forebrain excitatory neurons of the mice. These mice were viable, and fertile, and displayed no gross alterations, and they still showed hypersensitivity to chronic pain. Strikingly, however, these Tiam1 conditional knockout mice did not display depressive- or anxiety-like behaviors in five different tests that gauge depression or anxiety.

When researchers specifically deleted Tiam1 from ACC neurons, they found the same results as the broader forebrain deletion. Thus, Tiam1 expressed in ACC neurons appears to specifically mediate chronic pain-induced depressive-like behaviors.

Other studies have established that an underlying cause of stress-induced depression and anxiety disorders is alterations in synaptic connections in brain regions involved in mood regulation, including the prefrontal cortex, the hippocampus and the amygdala. Li and Tolias found similar changes in dendritic neurons in the ACC for chronic pain-induced depressive-like behavior — they saw a significant increase in dendritic spine density and signs of increased cytoskeleton building. This was accompanied by increased NMDA receptor proteins and increased amplitudes of NMDA currents in the ACC neurons, both associated with hyperactivity.

These maladaptive changes were not seen in the Tiam1-knockout mice.

Researchers further showed that inhibiting Tiam1 signaling with a known inhibitor alleviated the chronic pain-induced depressive-like behaviors, without reducing the chronic pain hypersensitivity itself. The inhibition also normalized dendritic spine density, cytoskeleton building, NMDA receptor protein levels and NMDA current amplitudes.

Ketamine is a drug known to produce rapid and sustained antidepressant-like effects in chronic pain-induced depression, without decreasing sensory hypersensitivity. However, its mechanism is not fully understood. Li, Tolias and colleagues showed that ketamine’s sustained antidepressant-like effects in chronic pain are mediated, at least in part, by ketamine’s blocking the Tiam1-dependent, maladaptive synaptic plasticity in the mouse ACC neurons.

“Our work demonstrates the critical role Tiam1 plays in the pathophysiology of chronic pain-induced mood dysregulation and the sustained antidepressant-like effects of ketamine, revealing it as a potential therapeutic target for the treatment of comorbid mood disorders in chronic pain,” Li said.

Co-first authors of the study, “TIAM1-mediated synaptic plasticity underlies comorbid depression-like and ketamine antidepressant-like actions in chronic pain,” are Qin Ru and Yungang Lu, Baylor College of Medicine.

Co-authors with Li, Tolias, Ru and Lu are Ali Bin Saifullah, Francisco A. Blanco and Changqun Yao, Baylor College of Medicine; Juan P. Cata, MD Anderson Cancer Center, Houston, Texas; and De-Pei Li, University of Missouri School of Medicine, Columbia, Missouri.

Support came from United States Department of Defense grants W81XWH-20-10790 and W81XWH-21-10742, the Mission Connect/TIRR Foundation, and National Institutes of Health grant NS062829.

At UAB, Anesthesiology and Perioperative Medicine is a department in the Marnix E. Heersink School of Medicine.