Monday, April 17, 2023

FOSSILS & DINOSAURS

Tracing Earth’s past in prehistoric rock deposits

Peer-Reviewed Publication

INDIAN INSTITUTE OF SCIENCE (IISC)

Outcrop of the Palaeoproterozoic section in the Cuddapah basin 

IMAGE: OUTCROP OF THE PALAEOPROTEROZOIC SECTION IN THE CUDDAPAH BASIN view more 

CREDIT: YOGARAJ BANERJEE

What did the Earth look like about two billion years ago, when the planet’s atmosphere was being oxygenated?

By analysing ancient dolomite (carbonate) deposits found in Vempalle, in the Cuddapah district of Andhra Pradesh, researchers at the Indian Institute of Science (IISc) and the University of Tennessee have estimated the temperature and composition of a shallow, inland sea that most likely existed back in that time, called the Palaeoproterozoic era.

Their findings provide insight into how the conditions during that time provided just the right ambience for the emergence and bloom of photosynthetic algae. It also shows how a wealth of data about our planet’s past remains hidden inside ancient rocks.  

“The story of our planet is written in the different strata of rocks,” explains Prosenjit Ghosh, Professor at the Centre for Earth Science (CEaS), IISc, and corresponding author of the study published in Chemical Geology.

Planet Earth hasn’t always been this hospitable for life. It has been through different phases of climatic extremes, including periods when carbon dioxide levels were almost too toxic for living creatures, just like our neighbour, Venus. However, various studies of fossils from the Palaeoproterozoic era have shown that some life might have existed even under these harsh conditions.

The large amounts of CO2 in the atmosphere were absorbed by the sea and trapped as carbonates in dolomites, says Yogaraj Banerjee, a former PhD student from CEaS and one of the authors. 

“[Dolomite] is a direct precipitate from seawater. It provides a signal not only of seawater chemistry but also of seawater temperature,” explains Robert Riding, Research Professor at the Department of Earth and Planetary Sciences, University of Tennessee, USA, and another author of the study.  

The team of researchers collected dolomite samples from chert – hard rocks formed by the interaction of microbes with seawater – as well as deposits underneath them called dolomitic lime-mud. Having first identified the strata of rock where the dolomitic mud could be found, the researchers extracted and transported them back to the lab. Then, they used a state-of-the-art technique known as clumped isotope thermometry to analyse them. The technique allows scientists to narrow down the temperature and composition of the deposits by looking at the arrangement of the carbon and oxygen bonds.  

After two years of intense analysis, the team was able to figure out from the dolomitic mud that the temperature of the seawater during its original time period was about 20°C. This is in contrast to previous studies that analysed only chert samples from around the same period, and had estimated that the temperature was higher, around 50°C. The lower temperature estimate from the current study agrees more closely with the theory that the conditions were ideal for supporting lifeforms.  

During the Palaeoproterozoic era, the type of water present was earlier believed to be only heavy water, containing a specific set of isotopes or forms of hydrogen. However, in the current study, the team showed that light water – the regular form of water found even today – was also present back then. 

Taken together, these insights – the lower seawater temperature and the presence of light water – strongly support the hypothesis that the conditions around two billion years ago were just right for photosynthetic algae to emerge. These algae were mainly responsible for pumping oxygen into the atmosphere, and making way for other lifeforms to evolve and populate the planet.  

The team now plans to search for similar lime-mud deposits in other places around the world to gather additional insights about the Palaeoproterozoic era.

Palaeoproterozoic (around 2 billion years-old) stromatolite fossils studied in this project

CREDIT

Yogaraj Banerjee

Environmental toxin PCB found in deep sea trench

Peer-Reviewed Publication

UNIVERSITY OF SOUTHERN DENMARK

PCB sediment 

IMAGE: A SEDIMENT CORE HAS JUST BEEN RETRIEVED FROM THE ATACAMA TRENCH DURING AN EXPEDITION WITH THE RESEARCH VESSEL R/V SONNE. view more 

CREDIT: ANNI GLUD/SDU.

PCB has been banned in most countries since the 1970s, but that doesn't mean it no longer exists. Now, deep-sea researchers report that they have found PCB at the bottom of the Atacama Trench in the Pacific Ocean.

During their expedition to the deep-sea trench, the research team retrieved sediment cores and analyzed them for PCB occurrences at five different locations in the trench. All the samples of surface sediment analyzed contained PCB.

The study, led by Professor Anna Sobek from the Department of Environmental Science at Stockholm University and Professor Ronnie N. Glud, director of the Danish Center for Hadal Research at the University of Southern Denmark, has been published in the scientific journal Nature Communications.

PCB is short for Poly-Chlorinated Biphenyls, which covers 209 different substances. They were introduced in the 1930s and have been used primarily in building materials and technical components, but are now banned in most countries and classified as a highly persistent environmental toxin. PCB can be carcinogenic and cause reproductive harm.

Although the world's production of PCBs dropped significantly in the 1970s, the substances still pose an environmental threat. In 2018 researchers reported, for example, that half of the world's killer whale populations were weakened by PCB. 

Another study has found that scavenging amphipods in the deep sea contained large amounts of PCBs. 

"It is thought-provoking that we find traces of human activity at the bottom of a deep-sea trench; a place that most people probably perceive as distant and isolated from our society," says Professor Ronnie N. Glud, who has participated in more than 10 expeditions to deep-sea trenches around the world.

These expeditions have helped to dispel the myth that deep-sea trenches are unaffected by what happens on the surface and have provided insight into the surprisingly rich, active, and varied life at the greatest depths of the ocean. The studies have also shown that deep-sea trenches accumulate large amounts of organic material, contributing to the oceans' ability to absorb carbon released into the atmosphere through fossil fuel burning.

However, not only organic material accumulates in deep-sea trenches, which are also called hadal trenches. For example, the Danish Center for Hadal Research reported in 2021 that mercury also accumulates in the trenches' sediments, and in 2022, a similar announcement was made about black carbon, which is particles that are mainly formed by the combustion of fossil fuels.

The concentration of PCBs in samples from the Atacama Trench is not alarmingly high, according to Ronnie N. Glud. He points out that much higher concentrations have been found in places like the Baltic Sea, North Sea, and Tokyo Bay. Concentrations 300-1500 times higher have been measured in the Baltic Sea.

“These are places with a lot of human activity, so one would expect that. The Atacama samples do not show very high concentrations but considering that they were retrieved from the bottom of a deep-sea trench, they are relatively high. A priori no one would expect to find pollutants in such a place”, says Ronnie N. Glud.

PCBs are hydrophobic, meaning they are not very soluble in water. Instead, they bind to organic material that sinks to the bottom.

“The Atacama trench is located in an area with relatively high production of plankton in surface waters. When the plankton dies, it sinks to the bottom of the ocean”, explains Anna Sobek.

In addition, large amounts of material are transported down the steep slopes and deposit in the deepest areas.

Some of the organic material that reaches the bottom of the Atacama trench is eventually decomposed by microorganisms, and as a result, PCBs accumulate in sediment.

PCBs are persistent compounds that are slowly redeposited over time, which is why increasing concentrations can be found in inaccessible areas such as the hadal trenches, even though they were largely banned worldwide in the 1970s.

“Unlike coastal areas where PCB concentrations are typically higher in deeper sediment layers deposited 50 years ago, PCB concentrations in hadal sediments are highest in the upper sediment layers, indicating that PCBs have only recently reached the deeper trenches and that concentrations have not yet peaked: We may see higher concentrations in a few years”, says Ronnie N. Glud.

The deep-sea trenches are home to many different microorganisms and animals that have adapted to the extreme living conditions. Perhaps they are also home to organisms that can metabolize the pollutants that are deposited there.

That is one of the focus points of Danish Center for Hadal Research and for this research, the center holds a solid stock of frozen sediment samples collected from expeditions to different deep-sea trenches in 2021 and 2022.

“We are interested in finding out if PCBs are also present in other deep-sea trenches or if they are unique to the Atacama trench. We also want to investigate the bacteria that live down there and learn more about their function”, says Ronnie N. Glud.

The deep-sea trenches are located in the hadal zone of the ocean, which lies at depths of 6-11 km. There are about 27 deep-sea trenches, also called hadal trenches, named after the Greek god Hades, who ruled the underworld.


Samples from the bottom of the Atacama trench were taken with this "multiple core sampler", which is shown here on its way up with samples


Sediment core from the Atacama trench

A sediment core from the Atacama trench is being cut open for further analysis

CREDIT

Anni Glud/SDU

Coastal species persist on high seas on floating plastic debris

Peer-Reviewed Publication

UNIVERSITY OF HAWAII AT MANOA

Floating debris 

IMAGE: EXAMPLES OF FLOATING PLASTICS COLLECTED IN THE NORTH PACIFIC SUBTROPICAL GYRE DURING THE OCEAN CLEANUP’S 2018 EXPEDITION. view more 

CREDIT: THE OCEAN CLEANUP

The high seas have been colonized by a surprising number of coastal marine invertebrate species, which can now survive and reproduce in the open ocean, contributing strongly to the floating community composition. This finding was published today in Nature Ecology and Evolution by a team of researchers led by the Smithsonian Environmental Research Center (SERC) and the University of Hawai‘i (UH) at Mānoa. 

The researchers found coastal species, representing diverse taxonomic groups and life history traits, in the eastern North Pacific Subtropical Gyre on over 70 percent of the plastic debris they examined. Further, the debris carried more coastal species than open ocean species. 

“This discovery suggests that past biogeographical boundaries among marine ecosystems — established for millions of years — are rapidly changing due to floating plastic pollution  accumulating in the subtropical gyres,” said lead author Linsey Haram, research associate at SERC.

These researchers only recently discovered the existence of these “neopelagic communities,” or floating communities in deep ocean waters. To understand the ecological and physical processes that govern communities on floating marine debris, SERC and UH Mānoa formed a multi-disciplinary Floating Ocean Ecosystem (FloatEco) team. UH Mānoa led the assessment of physical oceanography and SERC evaluated biological and ecological dimensions of the study. 

For this study, the FloatEco team analyzed 105 plastic samples collected by The Ocean Cleanup during their 2018 and 2019 expeditions in the North Pacific Subtropical Gyre, which occupies most of the northern Pacific Ocean. The field work relied on participation of both individual volunteers and non-governmental organizations.

“We were extremely surprised to find 37 different invertebrate species that normally live in coastal waters, over triple the number of species we found that live in open waters, not only surviving on the plastic but also reproducing,” said Haram. “We were also impressed by how easily coastal species colonized new floating items, including our own instruments — an observation we’re looking into further.”

“Our results suggest coastal organisms now are able to reproduce, grow, and persist in the open ocean — creating a novel community that did not previously exist, being sustained by the vast and expanding sea of plastic debris,” said co-author Gregory Ruiz, senior scientist at SERC. “This is a paradigm shift in what we consider to be barriers to the distribution and dispersal of coastal invertebrates.” 

While scientists already knew organisms, including some coastal species, colonized marine plastic debris, scientists were unaware until now that established coastal communities could persist in the open ocean. These findings identify a new human-caused impact on the ocean, documenting the scale and potential consequences that were not previously understood.

“The Hawaiian Islands are neighbored in the northeast by the North Pacific garbage patch,” said Nikolai Maximenko, co-author and senior researcher at the UH Mānoa School of Ocean and Earth Science and Technology. “Debris that breaks off from this patch constitutes the majority of debris arriving on Hawaiian beaches and reefs. In the past, the fragile marine ecosystems of the islands were protected by the very long distances from coastal communities of Asia and North America. The presence of coastal species persisting in the North Pacific Subtropical Gyre near Hawai‘i is a game changer that indicates that the islands are at an increased risk of colonization by invasive species.”

“Our study underscores the large knowledge gap and still limited understanding of rapidly changing open ocean ecosystems,” said Ruiz. “This highlights the need for dramatic enhancement of the high-seas observing systems, including biological, physical and marine debris measurements.”

Coastal podded hydroid Aglaophenia pluma and open-ocean gooseneck barnacles Lepas living on floating plastic collected in the North Pacific Subtropical Gyre.

CREDIT

The Ocean Cleanup, in coordination with Smithsonian Institution

Learning about what happens to ecology, evolution, and biodiversity in times of mass extinction

'These are times of major changes in the environment, and how those changes impact the organisms is relevant to understanding our current environment and environmental changes'

Peer-Reviewed Publication

UNIVERSITY OF CONNECTICUT

In times of environmental upheaval, how do communities of organisms respond? When entire species are wiped out, do surviving species move in and take over, or do new species immigrate to fill the gaps?

These are questions that Sarah Brisson, Ph.D. student in UConn’s Department of Earth Sciences, set out to study. This research is published in the Proceedings of the Royal Society B.

Brisson studies a mass extinction event that happened in the Late Devonian period, around 370 million years ago, with the goal of understanding how ecosystems and the communities of organisms within them respond. For this study, Brisson focused on small, shelled, ocean-dwelling creatures called brachiopods by studying fossils collected from the Appalachian Basin in New York and Pennsylvania.

“The name ‘mass extinction events’ captures people’s attention. These are times of major changes in the environment, and how those changes impact the organisms is relevant to understanding our current environment and environmental changes,” says Brisson.

In the Late Devonian, the Appalachian Basin was a shallow sea that formed in the wake of the growing mountains. Brisson says the seafloor was likely covered with brachiopods, which were abundant in the sample set. In the water, fish were also becoming more abundant, and on land, a great greening was happening, with new plants evolving for the first time in Earth’s history.

“The Devonian world was very different; there were no flowering plants for millions of years. We’re just setting the stage to move into the Mesozoic — the dinosaur era — where we have big ferns and large, woody trees,” Brisson says.

In studying these ecosystem dynamics, Brisson looks at Earth as a system, with niche changes just one aspect of the entire structure.

“A niche space is an environment where an organism lives, in this case, the level of substrate disturbance and where along the depth profile the organisms most comfortable with,” says Brisson.

Two concepts to consider are niche conservatism and niche evolution. Brisson explains that with niche conservatism, organisms remain in place and retain their characteristics, whereas with niche evolution organisms change and evolve in some way into preferring the new environmental parameters through time.

“In biology, there’s a lot of talk about niche dynamics, and whether we see niche evolution or niche conservatism and there are not as many researchers studying this in deep time,” says Brisson.

After painstakingly identifying around 20,000 brachiopod fossils and analyzing their preferences across the depth gradient, Brisson assembled a dataset and used non-metric multi-dimensional scaling (nMDS) to see where different species were grouped across the stratigraphic range over time to interpret how the organisms responded before and after the mass extinction event. Brisson says the results were a bit of a surprise.

“I saw a lot of turnover where some species went extinct, but some species survived and remained in place, and their niches are conserved. Some scientists argue this isn’t the case in a large-scale extinction event and I didn’t expect that niche conservatism would be shown here.”

In extinction events like this one, where an estimated 35% of marine species went extinct, Brisson explains it is expected that the opening of so many niches would encourage nearby surviving species to move in to occupy the newly free space, and the results did show this happening to some extent.

“As a rule, however, we’re seeing niche conservatism in this region. In cases where you might see niche evolution in the rock record, there may have been different pressures on the organisms. I think leaving that question open is important because there are many different selective pressures and not all selective pressures can be applied to every situation.”

The factors that drove the extinction pulses in the Late Devonian are still debated, says Brisson. Some work, including co-author and UConn graduate Jaleigh Pier’s ’18 (CLAS) research, indicated a global cooling event took place. Other evidence shows widespread anoxia which could have resulted from an influx of nutrients, much like we see today with dead zones forming in offshore marine and aquatic environments.

“Part of the reason why I love the Devonian is that there are mass extinction events that have been studied so thoroughly, especially the Mesozoic mass extinction event, but there’s less certainty surrounding the Late Devonian. As you’re moving back through time, it’s harder to be certain because some of the proxies used in the Mesozoic don’t apply to the Devonian. It’s a neat and dynamic time to study.”

This work represents just one chapter of Brisson’s dissertation, and future analyses will look at the data further, including stable isotope analysis to understand how nitrogen may have impacted this region. Peering this far into the past may shed light on the accelerating species extinctions of today.

“I do foresee using this method for future studies because it’s a powerful tool for understanding what our ecosystems looked like in the past. It’s really fascinating to take these biological concepts and apply them back through time.”

Oregon State researchers make breakthrough in understanding the chemistry of wildfire smoke in wine

Peer-Reviewed Publication

OREGON STATE UNIVERSITY

Grape and smoke exposure research 

IMAGE: ELIZABETH TOMASINO, AN ASSOCIATE PROFESSOR OF ENOLOGY, AND COLE CERRATO, A POSTDOCTORAL STUDENT IN HER LAB, STUDY THE IMPACT OF SMOKE EXPOSURE ON GRAPES AT OREGON STATE UNIVERSITY'S WOODHALL VINEYARD. view more 

CREDIT: SEAN NEALON, OREGON STATE UNIVERSITY

CORVALLIS, Ore. – Oregon State University researchers have discovered a new class of compounds that contributes to the ashy or smokey flavors in wine made with grapes exposed to wildfire smoke.

This development is significant for winemakers who have struggled to combat the impact of smoke on grapes at a time when climate change is leading to an increase in the number and severity of wildfires, the researchers said.

“These findings provide new avenues for research to understand and prevent smoke taint in grapes,” said Elizabeth Tomasino, an associate professor of enology at Oregon State. “They also will help provide tools for the grape and wine industries to quickly make decisions about whether to harvest grapes or make wine following a smoke event.”

The findings, made in conjunction with researchers at Washington State University, were just published in the journal Food Chemistry Advances. Tomasino also discussed the findings in June at the American Society for Enology and Viticulture national conference in San Diego.

Wildfires are a significant threat to wineries because persistent exposure to smoke compromises the quality and value of wine grapes and adversely affects wines. That threat is particularly pronounced on the West Coast of the United States, where California, Oregon and Washington are three of the nation’s top four wine-producing states.

Using smoke tainted grapes to make wine can affect the aroma and flavor of the wine. The changes in flavor and aroma have traditionally been attributed to a class of compounds known as volatile phenols. However, volatile phenols weren’t considered good predictors of smoke taint issues, Tomasino said. For example, wines with high levels of these compounds often didn’t taste smoke tainted, and wines with low levels could taste smoke tainted, she said.

This led Tomasino and her team to search for other compounds that could be causing smoke taint in wine.

Last year, Tomasino and Jenna Fryer, a doctoral student in Tomasino’s lab, published a paper that outlined a new standard for tasting the smoky/ashy component of smoke taint in wine. As part of that work, they discovered the new class of sulfur-containing compounds, thiophenols. Thiophenols are not normally found in wines and alcoholic beverages. They are found in meat and fish, and past sensory research has used the terms meaty and burnt to describe them.

To better understand what impact thiophenols might have on wine, Cole Cerrato, an Oregon State researcher who works closely with Tomasino, set up an experiment at the university’s vineyard. Cerrato and others in the lab built a greenhouse-like structure, placed it over a row of grapes and exposed the grapes to smoke. They harvested those grapes and made wine with them.

The wines the researchers made were sent to Tom Collins, an assistant professor at Washington State’s Wine Science Center. He confirmed that thiophenols were found in the wines that had been exposed to smoke in Oregon State’s vineyard, and that the thiophenols were not found in control samples that had no smoke exposure.

During sensory analysis in Tomasino’s lab, the wines exposed to smoke in Oregon State’s vineyard – which has both thiophenols and volatile phenols in them – were described as ashy and smoky.

“To date, volatile phenol concentrations and frequent tasting of potentially impacted wines are the only predictors winemakers can use to determine the level of smoke they might have in their wines,” Tomasino said. “The discovery of thiophenols provides a new chemical marker for smoke taint that could provide a reliable way to identify smoke taint and ways to potentially eliminate it during the winemaking process.”

The research is funded by a $7.65 million grant Oregon State researchers and a team of West Coast university collaborators received in 2021 to study the impact of smoke exposure on grapes. Oregon State researchers are working with scientists at Washington State and the University of California, Davis, on the four-year project, which is funded by the U.S. Department of Agriculture’s National Institute of Food and Agriculture and through the USDA Agricultural Research Service. 

Co-authors of the paper also include Lindsay Garcia of Oregon State and Mackenzie Aragon and Layton Ashmore of Washington State.

Pinot noir grapes at Oregon State University's Woodhall Vineyard undergoing smoke experiments.

Methane from megafires: more spew than we knew


Novel detection technique raises pollution policy questions

Peer-Reviewed Publication

UNIVERSITY OF CALIFORNIA - RIVERSIDE

Wildfire haze 

IMAGE: WILDFIRE EMISSIONS POLLUTING THE VIEW IN 2020. view more 

CREDIT: FRAUSTO-VICENCIO/UCR

Using a new detection method, UC Riverside scientists found a massive amount of methane, a super-potent greenhouse gas, coming from wildfires — a source not currently being accounted for by state air quality managers.

Methane warms the planet 86 times more powerfully than carbon dioxide over the course of 20 years, and it will be difficult for the state to reach its required cleaner air and climate goals without accounting for this source, the researchers said. 

Wildfires emitting methane is not new. But the amount of methane from the top 20 fires in 2020 was more than seven times the average from wildfires in the previous 19 years, according to the new UCR study. 

“Fires are getting bigger and more intense, and correspondingly, more emissions are coming from them,” said UCR environmental sciences professor and study co-author Francesca Hopkins. “The fires in 2020 emitted what would have been 14 percent of the state’s methane budget if it was being tracked.” 

The state does not track natural sources of methane, like those that come from wildfires. But for 2020, wildfires would have been the third biggest source of methane in the state. 

“Typically, these sources have been hard to measure, and it’s questionable whether they’re under our control. But we have to try,” Hopkins said. “They’re offsetting what we’re trying to reduce.”

Traditionally, scientists measure emissions by analyzing wildfire air samples obtained via aircraft. This older method is costly and complicated to deploy. To measure emissions from 2020’s Sequoia Lightning Fire Complex in the Sierra Nevadas, the UCR research team used a remote sensing technique, which is both safer for scientists and likely more accurate since it captures an integrated plume from the fire that includes different burning phases. 

The technique, detailed in the journal Atmospheric Chemistry and Physics, allowed the lead author, UCR environmental sciences Ph.D. student Isis Frausto-Vicencio to safely measure an entire plume of the Sequoia Lightning Fire Complex gas and debris from 40 miles away. 

“The plume, or atmospheric column, is like a mixed signal of the whole fire, capturing the active as well as the smoldering phases,” Hopkins said. “That makes these measurements unique.”

Rather than using a laser, as some instruments do, this technique uses the sun as a light source. Gases in the plume absorb and then emit the sun’s heat energy, allowing insight into the quantity of aerosols as well as carbon and methane that are present.

Using the remote technique, the researchers found nearly 20 gigagrams of methane emitted by the Sequoia Lightning Fire Complex. One gigagram is 1,000 metric tons. An elephant weighs around one metric ton. For context, the fire therefore contained roughly 20,000 elephants’ worth of the gas.

This data matches measurements that came from European space agency satellite data, which took a more sweeping, global view of the burned areas, but are not yet capable of measuring methane in these conditions. 

If included in the California Air Resources Board methane budget, wildfires would be a bigger source than residential and commercial buildings, power generation or transportation, but behind agriculture and industry. While 2020 was exceptional in terms of methane emissions, scientists expect more megafire years going forward with climate change.

In 2015, the state first established a target of 40 percent reduction in methane, refrigerants and other air pollutants contributing to global warming by 2030. The following year, in 2016, Gov. Jerry Brown signed SB 1383, codifying those reduction targets into law.

The reductions are meant to come from regulations that capture methane produced from manure on dairy farms, eliminate food waste in landfills, require oil and gas producers to minimize leaks, ban certain gases in new refrigerators and air conditioners, and other measures.  

“California has been way ahead on this issue,” Hopkins said. ‘We’re really hoping the state can limit the methane emissions under our control to reduce short-term global warming and its worst effects, despite the extra emissions coming from these fires.”