Friday, July 28, 2023

 

From Down Under to Underground: surprising daddy long-legs spiders discovered in Australia and Réunion



Peer-Reviewed Publication

PENSOFT PUBLISHERS

Belisana coblynau, male 

IMAGE: BELISANA COBLYNAU, MALE view more 

CREDIT: HUBER ET AL.




Australia’s rich and diverse fauna never fails to surprise us, as a new spider species has been documented from the continent.

The novel species, a blind daddy long-legs, was found in boreholes in the arid Pilbara of Western Australia. It is the first cave-adapted daddy long-legs spider reported from the continent, with other blind species of its genus so far only found in Thailand, Laos, and Vietnam.

“It represents a subfamily that was previously thought to be restricted to the tropical north and east of the continent,” says Bernhard Huber, one of the authors of a recent study published in the journal Subterranean Biology.

“The new species suggests that these spiders were widely distributed in Australia before the continent’s aridification in the last tens of millions of years,” he adds.

Together with it, another extraordinary daddy long-legs species was described as new-to-science from Réunion island. It was collected in the Grotte de La Tortue, a 300,000-year-old lava tube. Its closest known relatives are in eastern Africa, which begs the question how the species reached the island.

The researchers believe its ground-dwelling ancestor arrived to Réunion “relatively recently and by highly accidental means (such as rafts or storms)” but adapted quickly to subterranean life.

“If our generic assignment is correct, then the ancestor of Buitinga ifrit must have reached Réunion from East Africa within the last few million years,” they write in their paper.

Curiously, both spiders were named after mythical underground dwellers: Belisana coblynau, ( KOBOLD  ) after “the mythical gnome-like creatures that are said to haunt mines and quarries,” and Buitinga ifrit,  after “a demon in Islamic mythology that is often associated with the underworld.”

Buitinga ifrit, male

CREDIT

Hubert et al.

Main entrance of the Grotte de La Tortue


Gallery of the lost goat in Caverne de La Tortue

CREDIT

T. Percheron


Original source:

Huber BA, Meng G, Clark HL, Cazanove G (2023) First blind daddy long-legs spiders from Australia and Réunion (Araneae, Pholcidae). Subterranean Biology 46: 1-19. https://doi.org/10.3897/subtbiol.46.105798

 

Bees and wasps use the same architectural solutions to join large hexagons to small hexagons


Despite different building materials and evolutionary histories, they converged on a similar design

Peer-Reviewed Publication

PLOS

Bees and wasps use the same architectural solutions to join large hexagons to small hexagons 

IMAGE: HONEY BEES AND SOCIAL WASPS SOLVE BUILDING PROBLEMS WITH THE SAME ARCHITECTURAL TRICKS, INCLUDING NON-HEXAGONAL CELLS, AND INTERMEDIATE-SIZED CELLS. CLOCKWISE FROM TOP CENTER: APIS MELLIFERA (PHOTO BY MICHAEL L. SMITH), VESPULA FLAVOPILOSA (PHOTO BY KEVIN J. LOOPE), APIS ANDRENIFORMIS (PHOTO BY JAMES C. MAKINSON), VESPULA SHIDAI (PHOTO BY TATSUYA SAGA), METAPOLYBIA MESOAMERICA (PHOTO BY KEVIN J. LOOPE), AND APIS FLOREA (PHOTO BY BAJAREE CHUTTONG). view more 

CREDIT: MICHAEL L. SMITH, KEVIN J. LOOPE, JAMES C. MAKINSON, TATSUYA SAGA, KEVIN J. LOOPE, BAJAREE CHUTTONG (CC-BY 4.0, HTTPS://CREATIVECOMMONS.ORG/LICENSES/BY/4.0/)



Bees and wasps have converged on the same architectural solutions to nest-building problems, according to a study by Michael L. Smith in the Department of Biological Sciences at Auburn University, US, and colleagues, publishing July 27th in the open access journal PLOS Biology.

Both honeybees and social wasps build nests made up of hexagonal “cells” where they raise their young and store their food. While they use different materials to build their nests, bees and wasps have independently evolved this hexagonal comb structure because it is the most efficient use of space and building materials. However, in some species of both bees and wasps, queens and males are larger than workers, and so need larger cells, creating a problem – cells of different sizes don’t fit snuggly together in the comb. The researchers analyzed photographs from the nests of five honeybee species and five wasp species, containing a total of 22,745 cells. They found that the size difference between these specialized reproductive cells and worker cells ranged from zero in the wasp Metapolybia mesoamerica, up to drone cells in nests of the honeybee Apis andreniformis that were 2.7 times larger than worker cells. The bigger the difference, the bigger the architectural problem.

The researchers found that wasps and bees used similar building techniques at the transition between small and large cells: if the size difference was minor, the insects built intermediate-sized hexagonal cells in between, but when the size difference was more pronounced, they built pairs of five- and seven-sided cells at the join. A mathematical model of the hexagonal comb structure generated a similar pattern of intermediate-sized and pentagonal/heptagonal cells at the transition between different cell sizes, indicating that the observed structure is based on fundamental geometric rules.

These results show that, despite 179 million years of independent evolution, honeybees and social wasps have converged on the same geometric solutions to the architectural challenge of building nests that can accommodate young of different sizes, the authors say.

Smith adds, “We went into this project not knowing what we'd find, but seeing that all these hexagon-building collectives have arrived at the same architectural solutions is amazing. These groups independently evolved hexagonal-cell building, and are separated by 179 million years, and yet, they've converged on the same architectural tricks.”

#####

In your coverage, please use this URL to provide access to the freely available paper in PLOS Biologyhttp://journals.plos.org/plosbiology/article?id=10.1371/journal.pbio.3002211

Citation: Smith ML, Loope KJ, Chuttong B, Dobelmann J, Makinson JC, Saga T, et al. (2023) Honey bees and social wasps reach convergent architectural solutions to nest-building problems. PLoS Biol 21(7): e3002211. https://doi.org/10.1371/journal.pbio.3002211

Author Countries: Germany, United States, Thailand, Australia, Japan

Funding: This work was supported by the National Science Foundation (grant number 2216835 to MLS, 2042411 to KHP, 1846340 to NN), the Deutsche Forschungsgemeinschaft (DFG, German Research Foundation) under Germany’s Excellence Strategy – EXC 2117 – 422037984 (MLS), the Packard Fellowship for Science and Engineering (KHP) and GETTYLABS (KHP). The funders had no role in study design, data collection and analysis, decision to publish, or preparation of the manuscript.


A nanoprobe developed for visual quantitative detection of pesticides


Peer-Reviewed Publication

HEFEI INSTITUTES OF PHYSICAL SCIENCE, CHINESE ACADEMY OF SCIENCES

A Nanoprobe Developed for Visual Quantitative Detection of Pesticides 

IMAGE: SCHEMATIC DIAGRAM OF MECHANISM OF VISUAL DETECTION OF AMINOMETHYL ESTER PESTICIDE RESIDUES BY RATIOMETRIC FLUORESCENT PROBE. view more 

CREDIT: XU SHIHAO




Recently, Prof. JIANG Changlong and his research team at the Institute of Solid State Physics, Hefei Institutes of Physical Science (HFIPS) of Chinese Academy of Sciences (CAS), developed and synthesized two highly effective ratiometric fluorescence nanoprobes. These nanoprobes, when combined with the color recognition capabilities of smartphones, enabled the visual and quantitative detection of pesticides in food and environmental water.

The research has been published in Chemical Engineering Journal and ACS Sustainable Chemistry & Engineering.

Carbamate compounds and organophosphorus pesticides are widely used in agriculture. Their residues can be found in crops due their slow degradation in nature. These pesticide residues can enter the body through respiration, skin absorption, or ingestion, posing a serious risk to human organ function and consumer safety. Currently, the main analytical methods for pesticide residue detection have limitations including high cost, complex operation, and long processing time. Therefore, it is crucial to develop new methods for pesticide detection that are fast, cost-effective, highly specific, and sensitive.

In this study, researchers developed an enzyme-free fluorescence probe using CdTe quantum dots (CdTe QD) as a background fluorescence to visually detect carbamate pesticides (CPs). The probe was based on the principle of 2,3-naphthalaldehyde (NDA) and sulfite-induced Strecker reactions. Upon the addition of CPs, a nucleophilic condensation reaction occurred, resulting in the production of green fluorescent isoindole. This reaction caused a distinct color change from red to green, allowing for rapid visual detection of carbamates. The probe exhibited a low detection limit (LOD) of 18.6 nM, which is below the national maximum residue standard.

Furthermore, a proportional fluorescence probe was developed by combining green carbon dots and CdTe quantum dots (CdTe QD) for the selective quantitative detection of methyl parathion (MP). Under alkaline conditions, MP underwent rapid hydrolysis to form p-nitrophenol (p-NP). The interaction between carbon dots and p-NP led to the quenching of green fluorescence through hydrogen bond strengthening, resulting in a sensitive color change from green to red. The LOD for MP detection was as low as 8.9 nM.

This work provides a new strategy for the detection of carbamate pesticide residues and organophosphorus pesticide residues, and widens the application of chemical-sensitive luminescent materials in environmental protection and food safety, according to the team.

 

“Swine flu” strain has passed from humans to swine nearly 400 times since 2009


Analysis provides further support for managing influenza A infection in people who work with swine


Peer-Reviewed Publication

PLOS

“Swine flu” strain has passed from humans to swine nearly 400 times since 2009 

IMAGE: DR. GIOVANA CIACCI ZANELLA SWABBING A PIG SNOUT TO GATHER SAMPLES TO TEST FOR INFLUENZA A VIRUS view more 

CREDIT: M.MARTI AND A.GRIMES, USDA (CC-BY 2.0, HTTPS://CREATIVECOMMONS.ORG/LICENSES/BY/2.0/




A new study of the strain of influenza A responsible for the 2009 H1N1 pandemic—pdm09—shows that the virus has passed from humans to swine about 370 times since 2009, and subsequent circulation in swine has resulted in the evolution of pdm09 variants that then jumped from swine to humans. Alexey Markin of the U.S. Department of Agriculture-Agricultural Research Service and colleagues present these findings in the open-access journal PLOS Pathogens.

Influenza A can cause the flu in humans, birds, swine, and some other mammals. In 2009 and 2010, a pandemic caused by pdm09 resulted in thousands of human deaths around the world. Since then, as demonstrated in prior studies, pdm09 has repeatedly passed from humans to swine, and circulation of the virus among swine leads to evolutionary changes in pdm09 that could make it more likely to cross back and infect humans.

To better understand this risk, Markin and colleagues analyzed pdm09 transmission data between 2009 and 2021. They also investigated how these interspecies events may have affected the genetic diversity of the virus in swine and the risk of subsequent human infection.

The analysis showed that, since 2009, pdm09 has crossed from humans to swine about 370 separate times, with most of these events occurring when pdm09 burden was highest among humans. In 2020 and 2021, during the COVID-19 pandemic, pdm09 circulation among humans dropped, but pdm09 circulation persisted in swine as a result of about 150 human-to-swine transmissions between 2018 and 2020.

The researchers found that most human-to-swine transmission events were isolated, but a few led to sustained circulation of different pdm09 genetic lineages among swine in the U.S. These swine-circulating variants appeared to be genetically poor matches for human seasonal vaccines, suggesting that the vaccines would have provided scant protection against them. The analysis also showed that persistent pdm09 circulation among swine was associated with at least five instances of swine-to-human transmission.

These findings add to mounting evidence that managing influenza A infection in people who work with swine can help prevent transmission to pigs, and subsequently reduce the risk of spread back to humans.

The authors add: "“Controlling influenza A virus infection in humans can minimize spillover of viruses into pigs and reduce the diversity of viruses circulating in swine populations. Limiting virus diversity in pigs can minimize the emergence of novel viruses and the potential for swine-to-human transmission of influenza A virus.”

############

In your coverage, please use this URL to provide access to the freely available article in PLOS Pathogenshttp://journals.plos.org/plospathogens/article?id=10.1371/journal.ppat.1011476

Citation: Markin A, Ciacci Zanella G, Arendsee ZW, Zhang J, Krueger KM, Gauger PC, et al. (2023) Reverse-zoonoses of 2009 H1N1 pandemic influenza A viruses and evolution in United States swine results in viruses with zoonotic potential. PLoS Pathog 19(7): e1011476. https://doi.org/10.1371/journal.ppat.1011476

Author Countries: US

Funding: This work was supported in part by the USDA-ARS (ARS project number 5030-32000-231-000D to ALVB and TKA); USDA-APHIS (ARS project number 5030-32000-231-080-I to ALVB and TKA); the National Institute of Allergy and Infectious Diseases, National Institutes of Health, Department of Health and Human Services (Contract No. 75N93021C00015 to PCG, ALVB, and TKA); the Centers for Disease Control and Prevention (contract number 21FED2100395IPD to ALVB and TKA); the Department of Defense, Defense Advanced Research Projects Agency, Preventing Emerging Pathogenic Threats program (contract number HR00112020034 to PCG, ALVB, and TKA); the USDA-ARS Research Participation Program of the Oak Ridge Institute for Science and Education (ORISE) through an interagency agreement between the U.S. Department of Energy (DOE) and USDA-ARS (contract number DE-AC05-06OR23100 to ZWA); and the SCINet project of the USDA-ARS (ARS project number 0500-00093-001-00-D to ALVB and TKA). The funders had no role in study design, data collection and interpretation, or the decision to submit the work for publication. Mention of trade names or commercial products in this article is solely for the purpose of providing specific information and does not imply recommendation or endorsement by the USDA, DOE, CDC, or ORISE. USDA is an equal opportunity provider and employer.

 

Nematode resurrected from Siberian permafrost laid dormant for 46,000 years


Genome analysis shows new nematode species shares molecular toolkit for survival with C. elegans


Peer-Reviewed Publication

PLOS

Nematode resurrected from Siberian permafrost laid dormant for 46,000 years 

IMAGE: GENERAL MORPHOLOGY OF P. KOLYMAENSIS, FEMALE. SCANNING ELECTRON PICTURES (A, C), LIGHT MICROSCOPY PHOTOGRAPHS (E, F) AND GRAPHIC PRESENTATIONS (B, D, G) OF HOLOTYPE: A, B) ENTIRE BODY, C, D) ANTERIOR ENDS, E) ANTERIOR BODY, F) PERIVULVAR BODY REGION, G) TAIL. ABBREVIATIONS: L.F.–LATERAL FIELD, OV–OVARY, PRO–PROCORPUS OF THE PHARYNX, T.B.–TERMINAL BULB OF THE PHARYNX, U–UTERUS WITH EGGS, V–VULVA, V.P.–VENTRAL PORE. SCALE BARS: A, D, E, F, G– 20 ΜM, B– 100 ΜM, C– 2 ΜM view more 

CREDIT: SHATILOVICH ET AL, 2023, PLOS GENETICS, CC-BY 4.0 (HTTPS://CREATIVECOMMONS.ORG/LICENSES/BY/4.0/)




A soil nematode reanimated from Siberian permafrost had laid dormant for approximately 46,000 years, according to a study publishing July 27, 2023 in the open access journal PLOS Genetics by Anastasia Shatilovich at the Institute of Physicochemical and Biological Problems in Soil Science RAS in Russia, Vamshidhar Gade at the Max Planck Institute for Molecular Cell Biology and Genetics in Germany, and colleagues.

Some animals, such as tardigrades, rotifers, and nematodes, can survive harsh conditions by entering a dormant state known as “cryptobiosis”. Previously, nematode individuals were reanimated from samples collected from a fossilized burrow in silt deposits in the northeastern Arctic. In this study, radiocarbon analysis of plant material from the burrow revealed that these frozen deposits, 40 meters below the surface, had not thawed since the late Pleistocene, between 45,839 and 47,769 years ago.

Using genome sequencing, assembly, and phylogenetic analysis of the nematode’s relationship to modern species, the researchers determined that it belongs to a previously undescribed species, Panagrolaimus kolymaensis. They compared its genome with the model organism, Caenorhabditis elegans, and identified genes in common that are involved in cryptobiosis. When mildly desiccated in the laboratory, both species increased production of a sugar called trehalose, which may help them to survive harsh desiccation and freezing. They tested the survival capabilities of P. kolymaensis and found that exposure to mild desiccation before freezing helped prepare the worms for cryptobiosis and improved survival at -80°C. This treatment also benefitted C. elegans dauer larvae, which then survived 480 days at -80°C with no reductions in viability or reproduction after thawing.

This study extends the longest reported cryptobiosis in nematodes by tens of thousands of years. By adapting to cope with extreme conditions, such as permafrost, for short periods of time, the nematodes might have gained the potential to remain dormant over geological timescales.

The authors add, “This work also suggests that fluctuations in the environment also determine the time an organism can remain in a cryptobiotic state.”

#####

In your coverage, please use this URL to provide access to the freely available article in PLOS Genetics: http://journals.plos.org/plosgenetics/article?id=10.1371/journal.pgen.1010798

Citation: Shatilovich A, Gade VR, Pippel M, Hoffmeyer TT, Tchesunov AV, Stevens L, et al. (2023) A novel nematode species from the Siberian permafrost shares adaptive mechanisms for cryptobiotic survival with C. elegans dauer larva. PLoS Genet 19(7): e1010798. https://doi.org/10.1371/journal.pgen.1010798

Author Countries: Germany, Ireland, Russia, UK

Funding: This work was supported by the Russian Foundation fr Basic Research (19-29-05003-mk) to AS and ER. VRG and TVK acknowledge the financial support from the Volkswagen Foundation (Life research grant 92847). PHS and TTH are supported by a DFG ENP grant to PHS (DFG project 434028868). GMH is funded by a UCD Ad Astra Fellowship. The funders had no role in study design, data collection and analysis, decision to publish, or preparation of the manuscript.

 

Time-traveling’ pathogens in melting permafrost pose likely risk to environment


Digital simulation suggests small percentage of pathogens could cause significant ecological damage


Peer-Reviewed Publication

PLOS




Ancient pathogens that escape from melting permafrost have real potential to damage microbial communities and might potentially threaten human health, according to a new study by Giovanni Strona of the European Commission Joint Research Centre and colleagues, published July 27 in the open-access journal PLOS Computational Biology.

The idea that “time-traveling” pathogens trapped in ice or hidden in remote laboratory facilities could break free to cause catastrophic outbreaks has inspired generations of novelists and screenwriters. While melting glaciers and permafrost are giving many types of dormant microbes the opportunity to re-emerge, the potential threats to human health and the environment posed by these microbes have been difficult to estimate.

In a new study, Strona’s team quantified the ecological risks posed by these microbes using computer simulations. The researchers performed artificial evolution experiments where digital virus-like pathogens from the past invade communities of bacteria-like hosts. They compared the effects of invading pathogens on the diversity of host bacteria to diversity in control communities where no invasion occurred.

The team found that in their simulations, the ancient invading pathogens could often survive and evolve in the modern community, and about 3 percent became dominant. While most of the dominant invaders had little effect on the composition of the larger community, about 1 percent of the invaders yielded unpredictable results. Some caused up to one third of the host species to die out, while others increased diversity by up to 12 percent compared to the control simulations.

The risks posed by this 1 percent of released pathogens may seem small, but given the sheer number of ancient microbes regularly released into modern communities, outbreak events still represent a substantial hazard. The new findings suggest that the risks posed by time-traveling pathogens – so far confined to science fiction stories – could in fact be powerful drivers of ecological change and threats to human health.

############

In your coverage, please use this URL to provide access to the freely available article in PLOS Computational Biologyhttps://journals.plos.org/ploscompbiol/article?id=10.1371/journal.pcbi.1011268

Citation: Strona G, Bradshaw CJA, Cardoso P, Gotelli NJ, Guillaume F, Manca F, et al. (2023) Time-travelling pathogens and their risk to ecological communities. PLoS Comput Biol 19(7): e1011268. https://doi.org/10.1371/journal.pcbi.1011268

Author Countries: Australia, Finland, US

Funding: GS, PC, VM and LZ where partly supported by a "HiLIFE BIORESLIENCE seed grant" from the University of Helsinki (https://www.helsinki.fi/en/hilife-helsinki-institute-life-science/research/grand-challenges/understanding-biological-resilience-bioresilience). The funders had no role in study design, data collection and analysis, decision to publish, or preparation of the manuscript.