Friday, July 28, 2023

 WHITE SUPREMACIST MEDICINE

“They were never sick”


Bias in lab tests is causing misdiagnosis, and unnecessary and expensive treatment for many African Americans


Reports and Proceedings

INTERNATIONAL GENETICS CONGRESS




Professor Nancy Cox from Vanderbilt Genetics Institute is calling for routine adoption of inexpensive genetic tests to eliminate the bias and misdiagnosis of lab tests calibrated largely using samples from white males.

She says it’s likely to be a widespread issue for Indigenous and ethnic groups worldwide. She presented her findings at the International Congress of Genetics in Melbourne, Australia.

Many African Americans undergo painful and expensive bone marrow biopsies because they have low white cell counts – a indicator of a range of possible diseases.  

But about two thirds of African-Americans have lower white cell counts than Europeans because of genetic adaptations that reduce risk of malaria, so the lab test is really just confirming that they have ancestors from areas with endemic malaria.

Cox and her team are studying how lab tests for kidney disease, white cell counts, and other chronic conditions can lead to underdiagnosis and failure to treat or overdiagnosis and unneeded treatments due to the longstanding use of relatively small numbers of samples from white men used to establish reference ranges for lab tests.

“There was no ill will, no intent to do bad medicine, people just haven’t allowed for the diversity of humanity.”

Indigenous Australian Professor Alex Brown suggests that this is just one example of where the lack of appreciation and application of genomic variation across populations can lead to adverse outcomes for many communities. “Despite the increasingly central role of genomics in modern healthcare and biomedical research, the failure to understand diversity remains a key roadblock to ensuring all populations can benefit from what precision medicine could and should offer.” Professor Brown leads the new Australian Alliance for Indigenous Genomics (ALIGN).

Māori researchers Associate Professor Phillip Wilcox of the University of Otago says that about half the Māori they tested in one of their studies had a variant of a gene which meant that the prescription of any one of six commonly prescribed drugs would need to be changed.  Some variants were much more common than what is typically observed in European populations on which most prescribing recommendations are based.

"I don't even know what to call this kind of disparity," says Cox. "It's not that these genetic variations are directly leading to disease, it is more a failure to understand the consequences of genetic diversity."

“Fundamentally we need to understand that humans are diverse, and we need to develop reference ranges for tests that reflect our diversity,” she says.

Cox is advocating 'individualised ranges'. This means that when you go to see your physician for some bloods, the numbers you get back will be assessed using scales calibrated just for you, based on your sex and age - but also, crucially, on your genetics.

But with medical systems under strain, we can't afford to add more labour to a doctor's day. Vanderbilt wants to develop protocols that will make bespoke tests quick and easy to administer.

"There are no simple solutions to complex problems," said Cox. "[But] we can't go on with our medical centre juggernaut... we ignore icebergs at our peril."

This press release is based on a plenary presenatation by Cox at the International Congress of Genetics in Melbourne, Australia on 21 July 2023.  Brown and Wilcox also spoke at the Congress. 

POSTMODERN SPAGYRIC HOMEOPATHY

Study highlights importance of quality and potency of saw palmetto extracts in prostate health supplements


7 out of 28 popular products studied contain the amount of authentic saw palmetto extract shown to be clinically effective in relieving lower urinary tract symptoms affecting millions of men


Peer-Reviewed Publication

VALENSA INTERNATIONAL




A new study published in the Journal of Urology Open Plus reveals that 7 saw palmetto products met the identity and potency standards to effectively address urinary tract symptoms associated with an enlarged prostate. According to the lead author of the study, Dr. Bilal Chughtai, who is a board-certified urologist, of the 28 supplements included in the study, only six of the lipid extracts and one multi-active product were found to have the appropriate dosage of 320 milligrams of saw palmetto extract and the minimum 80% fatty acids clinically shown to address inflammation and improve symptoms that nearly all men will experience in their lifetime, like increased urination, sudden urgency, weak stream and disrupted sleep. 

The study included some of the popular saw palmetto retail products, which consumers find in stores and online platforms like Amazon, including berry powders, extracts, blends and multi-actives. The blinded study was performed at Eurofins Food Chemistry Testing, Inc., Madison, WI. Total fatty acid content ranged from 0.796% for a berry powder product to 89.923% for a lipid extract product. None of the berry powders met the criteria for clinical efficacy. Lab tests confirmed that Valensa USPlus® was unique in meeting the criteria established in the US Pharmacopeia monograph for standardized saw palmetto extracts (min. 80% total fatty acids), met the lipid profile for an authentic product, and was found to contain the clinically effective dose of 320 mg.

“Only concentrated extract of mature saw palmetto berries has been found to inhibit the biological process by which testosterone gets converted to DHT, which leads to benign prostate enlargement,” said Dr. Bilal Chughtai. “This study not only confirms the rampant variability of saw palmetto products, but also highlights the need for physicians and industry to verify the quality of the supplements they’re recommending to patients and consumers to ensure the best results possible.”

Saw palmetto is a wildcraft plant native to remote areas of the southeastern U.S. Among increased demand of saw palmetto, there has been widespread misrepresentation, blending and dilution of saw palmetto extracts with less expensive plant oils like coconut, canola, olive and sunflower or use unripened berries that do not provide clinical benefit. 

Valensa’s USPlus® is the first and only USP verified ingredient that is a lipidosterolic extract of  saw palmetto berry, also known as Serenoa repens. As per the newly-published study, only one of the 28 products met United States Pharmacopeia criteria for a standardized lipidosterolic extract, defined as total fatty acid content ≥80% and a fatty acid profile indicative of authentic Serenoa repens based on the ratios of the lauric acid concentration to 9 other individual fatty acid concentrations.

Valensa’s USPlus® rigorous quality-control process ensures the product contains only mature, wild-harvested, Fresh from Florida® saw palmetto berries that are sourced using sustainable harvesting practices. Valensa USPlus is able to provide this uncompromising quality through a proprietary ultrahigh pressure extraction process that delivers a standardized lipidosterolic extract of saw palmetto for clinical effectiveness. 

“Without studies like this to bring quality issues to light, it’s very difficult for consumers to know if they’re taking a supplement full of ‘sawdust’ that doesn’t do anything or a quality saw palmetto product that promotes your prostate health,” said Stephen Hill, Vice President of Quality and Regulatory of Valensa International. “By understanding the role that high-quality saw palmetto extract can play in men’s health, millions of men can benefit from this safe and natural solution to maintaining prostate health and possibly prevent or delay the need for more serious medical interventions down the line.”

Benign prostatic hyperplasia, or an enlarged prostate, affects about 50 percent of men between the ages of 51 and 60 and up to 90 percent of men older than 80. Valensa USPlus is the first and only USP Verified saw palmetto extract ingredient available to men to support lower urinary tract symptoms with no sexual side effects.*^ 

USP, the United States Pharmacopeia, is a 200 year old non-profit scientific organization that sets standards for drugs and dietary supplements. USP helps protect patient safety and improve the health of people around the world.

Learn more about Valensa USPlus’s harvest to bottle quality control standards and patented extraction process here: https://www.youtube.com/watch?v=JGddboRQdjk 

*Adapted from: Carraro JC, et al. Prostate. 1996;29:231-240; Debruyne F, et al. Eur Urol. 2002;41:497-506; Latil A, et al. Prostate. 2015;75:1857-1867; Pytel YA, et al. Adv Ther. 2002;19:297-306; Zlotta AR, et al. Eur Urol. 2005;48:269-276

^These statements have not been evaluated by the FDA. This product is not intended to diagnose, treat, cure, or prevent any disease.

About Valensa International USPlus®
Located in Eustis, FL, Valensa International USPlus is the first and only USP Verified saw palmetto oil extract in the world. Learn more at www.Valensa.com/USPlus/.

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Retina cell breakthrough could help treat blindness


Scientists harness nanotechnology to help tackle a common cause of sight loss

Peer-Reviewed Publication

ANGLIA RUSKIN UNIVERSITY




Scientists have found a way to use nanotechnology to create a 3D ‘scaffold’ to grow cells from the retina –paving the way for potential new ways of treating a common cause of blindness. 

 

Researchers, led by Professor Barbara Pierscionek from Anglia Ruskin University (ARU), have been working on a way to successfully grow retinal pigment epithelial (RPE) cells  that stay healthy and viable for up to 150 days. RPE cells sit just outside the neural part of the retina and, when damaged, can cause vision to deteriorate. 

 

It is the first time this technology, called ‘electrospinning’, has been used to create a scaffold on which the RPE cells could grow, and could revolutionise treatment for one of age-related macular degeneration, one of the world’s most common vision complaints.  

 

When the scaffold is treated with a steroid called fluocinolone acetonide, which protects against inflammation, the resilience of the cells appears to increase, promoting growth of eye cells. These findings are important in the future development of ocular tissue for transplantation into the patient’s eye. 

 

Age-related macular degeneration (AMD) is a leading cause of blindness in the developed world and is expected to increase in the coming years due to an ageing population. Recent research predicted that 77 million people in Europe alone will have some form of AMD by 2050. 

 

AMD can be caused by changes in the Bruch’s membrane, which supports the RPE cells, and breakdown of the choriocapillaris, the rich vascular bed that is adjacent to the other side of the Bruch’s membrane. 

 

In Western populations, the most common way sight deteriorates is due to an accumulation of lipid deposits called drusen, and the subsequent degeneration of parts of the RPE, the choriocapillaris and outer retina. In the developing world, AMD tends to be caused by abnormal blood vessel growth in the choroid and their subsequent movement into the RPE cells, leading to haemorrhaging, RPE or retinal detachment and scar formation. 

 

The replacement of the RPE cells is among several promising therapeutic options for effective treatment of sight conditions like AMD, and researchers have been working on efficient ways to transplant these cells into the eye. 

 

Lead author Professor Barbara Pierscionek, Deputy Dean (Research and Innovation) at Anglia Ruskin University (ARU) said: “This research has demonstrated, for the first time, that nanofibre scaffolds treated with the anti-inflammatory substance such as fluocinolone acetonide can enhance the growth, differentiation, and functionality of RPE cells. 

 

“In the past, scientists would grow cells on a flat surface, which is not biologically relevant. Using these new techniques. the cell line has been shown to thrive in the 3D environment provided by the scaffolds. 

 

“This system shows great potential for development as a substitute Bruch’s membrane, providing a synthetic, non-toxic, biostable support for transplantation of the retinal pigment epithelial cells. Pathological changes in this membrane have been identified as a cause of eye diseases such as AMD, making this an exciting breakthrough that could potentially help millions of people worldwide.” 

 

The peer-reviewed, open-access research has been published in the journal Materials & Design and can be read here

 

Extending a word’s meaning, whether by adult linguistic communities or by children, relies on the same cognitive foundation


Peer-Reviewed Publication

AMERICAN ASSOCIATION FOR THE ADVANCEMENT OF SCIENCE (AAAS)




Whether it’s a child extending their nonsense word for “duck” to encompass other birds, or broader adult linguistic communities dubbing a new piece of computer technology a “mouse” for its resemblance to the animal, humans are adept at extending word meanings. But do these two examples of the phenomenon of reusing the same word for multiple meanings really depend on the same process? A new study by Thomas Brochhagen and colleagues concludes after examining extensions in more than 1,400 languages that individual and population-level word meaning extension share a cognitive foundation. The foundation consists of knowledge about objects, events, properties and relations – such an object having a certain shape or an idea evoking a certain feeling – and using this knowledge to link a thing or idea that the person or population doesn’t yet have a word for to the current meaning of known words, based on similarities between the two. The computational framework developed by Brochhagen et al. used datasets of (1) common word overextensions used by children (individual-level) as they learn to speak, (2) documented historical (population-level) changes in a word’s meaning over time, and (3) a global database about colexification (i.e., when related meanings are expressed with the same word, like the same word “dit” used for “finger and toe”). The study will be helpful as linguists work to “develop a theory of language change and evolution that can link the micro processes operating within individuals over milliseconds, to those operating in communities over years, all the way up to the macro processes operating between communities over centuries,” writes Simon Greenhill in a related Perspective.

Disclaimer: AAAS an

New language tree model suggests hybrid origin for Indo-European languages


Peer-Reviewed Publication

AMERICAN ASSOCIATION FOR THE ADVANCEMENT OF SCIENCE (AAAS)




Paul Heggarty and colleagues present a new framework for the chronology and divergence of languages in the Indo-European family, which places the family’s origin at around 8300 BP – older than previous analyses

Their study also reconciles current linguistic and ancient DNA evidence to suggest that Indo-European languages first arose south of the Caucasus and subsequently branched northward to the Steppe regions before expanding throughout Eurasia. 

The origins and spread of Indo-European languages, which are spoken by nearly half of the world’s population, have long been debated. Much of the dispute centers on where the language group originated, with some scholars supporting an origin in the eastern Fertile Crescent that subsequently spread alongside agriculture and others supporting an origin in the Steppe region with spread facilitated by horse-based pastoralism. The new analysis by Heggarty et al. uses a dataset of 100 modern languages and 51 non-modern languages, examining shared word origin among the core vocabulary in these languages. The new dataset increases language sampling and does not necessarily assume that modern spoken languages derive directly from ancient written languages, which the authors say have hampered previous analyses. The resulting phylolinguistic family trees do not fully support either an agriculture or pastoralism-based origin for the language family, but instead support a “hybrid” hypothesis that contains elements of both scenarios in the spread of Indo-European languages, the authors write.

 

Conservation: Listening in on endangered Amazon River dolphins


Peer-Reviewed Publication

SCIENTIFIC REPORTS




Monitoring echolocation clicks could be used to track the movements of two endangered freshwater dolphin species that inhabit inaccessible parts of the Amazon Basin — the boto (or pink river dolphin) and the tucuxi — and their interactions with people, reports a paper published in Scientific Reports. A trial of the approach reveals new insights into dolphin movements and behaviour, which could contribute to conservation strategies for these species.

The boto (Inia geoffrensis) and the tucuxi (Sotalia fluviatilis) are both threatened by human activity such conflict with fishermen and pressure from agriculture, mining, and dam construction. During the wet season (April to August), both species of dolphin move into the floodplain forests (known as the várzea) bordering river channels in pursuit of freshwater fish. However, the floodplain and vegetation make it extremely challenging to survey dolphins using boats or drones  

Florence Erbs, Michel André, and colleagues used five hydrophones submerged to depths of between three and five metres to survey 800 square kilometres of the Mamirauá Sustainable Development Reserve in Brazil where the Solimões and Japurá rivers meet. Recordings were taken from river channels and confluence bays, floodplain lakes, and flooded forest at different times during the wet and dry seasons between June 2019 and September 2020. The authors used deep learning algorithms — known as a Convolutional Neural Network — and sound data collected manually from boat surveys to automatically classify detected sounds as echolocation clicks from dolphins, boat engine noises, or rain with an accuracy of 95, 92, and 98 percent respectively.

The researchers detected that the presence of dolphins increased from 10 percent of the day to 70 percent in the bay and river channel as water levels rose between November and January. They suggest that the dolphins were using these waterways to enter the floodplain. Boto adolescents and females with calves spent more time in the floodplains than males, either due to rich abundance of prey or as shelter against the males’ aggressive behaviour according to the authors.

The authors call for this methodology to be used to better understand habitat preferences and requirements of Amazon River dolphins.

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Springer Nature is committed to boosting the visibility of the UN Sustainable Development Goals and relevant information and evidence published in our journals and books. The research described in this press release pertains to SDG 14 (Life Below Water). More information can be found here.

ANCESTORS ARE NOT BUSH MEAT

The genetic heritage of our extinct ancestors


Gene flow from an extinct gorilla population to eastern gorillas discovered

Peer-Reviewed Publication

UNIVERSITY OF VIENNA

Grooming mountain gorillas in Bwindi National Park, in a multi-silverback group which is particular to mountain gorillas 

IMAGE: GROOMING MOUNTAIN GORILLAS IN BWINDI NATIONAL PARK, IN A MULTI-SILVERBACK GROUP WHICH IS PARTICULAR TO MOUNTAIN GORILLAS view more 

CREDIT: MIKE CRANFIELD, GORILLA DOCTORS



An international research study led by the University of Vienna (Austria) and the Institute of Evolutionary Biology (IBE) in Barcelona (Spain), recently published in the journal Nature Ecology and Evolution, provides a better insight into the evolutionary history of gorillas. Martin Kuhlwilm, scientist at the Department of Evolutionary Anthropology at the University of Vienna, and Harvinder Pawar, PhD student and Tomas Marques-Bonet, ICREA Research Professor at the Institute of Evolutionary Biology (IBE), a research centre of the Spanish National Research Council (CSIC) and Pompeu Fabra University (UPF), in collaboration with colleagues at the Sanger Institute, analysed the genomes of gorillas using modern statistical methods, including neural networks. The team discovered a gene flow event in this species of apes, which is closely related to humans, from an already extinct lineage to gorillas living today. This is similar to how modern humans and bonobos have preserved genes from extinct groups, which can still be found in our genomes.

Humans and gorillas share an exciting aspect in common: In both species, their DNA was mixed during evolution by mating with individuals from other groups which are already extinct today – and for this reason there was an introgression of genes from one group to another. In the course of evolutionary history, modern humans have exchanged genes with Neanderthals and Denisovans. Their legacy can still be found in the genome of many humans nowadays. There are few similar studies addressing this question in great apes, especially gorillas, because there are only a few fossils of our close living relatives, unlike the Homo sapiens, from which ancient DNA could be extracted for analysis. Therefore, the genomes of individuals living today are the only way to reconstruct their evolutionary history, which is of particular importance, because gorillas are threatened with extinction in the wild. 

Gene flow from ghost population provides new insights into evolutionary history

Gorillas are composed of two species (western and eastern gorillas), each of which has two subspecies: Western gorillas include the western lowland gorillas and the cross river gorillas, while eastern gorillas include the eastern lowland gorillas and the closely related mountain gorillas. In the current study, the leading teams of Tomas Marques-Bonet at the IBE and Martin Kuhlwilm at the University of Vienna, with collaboration of Chris Tyler-Smith and Yali Xue, from the Sanger Institute, analysed whole genomes of individuals from all four subspecies, including newly sequenced mountain gorilla genomes from Bwindi National Park in Uganda, one of only two places where the few remaining mountain gorillas can be found. Innovative statistical methods including the integration of neural networks revealed a surprising result: 40,000 years ago, genes were exchanged between a now-extinct gorilla ghost population and the common ancestor of the eastern lowland gorillas and the mountain gorillas. The scientist Martin Kuhlwilm explains, "Up to 3 % of the genome of today’s eastern gorillas includes remains of genes from this ghost population, which separated from the common ancestors of all gorillas more than 3 million years ago." And he continues, "On the other hand, we were not able to identify any of these DNA segments in the western gorillas." 

Gene flow from ghost population may affect gene functions

The international team was able to impress that the genetic input of already extinct ancestors is not only of interest in evolutionary history but can also have functional effects on present-day species. They demonstrated this with an example: The researchers found that a gene encoding a bitter taste receptor was introduced from the ghost population into today’s eastern lowland gorillas and mountain gorillas – and may have afterwards been under positive selection. This comes in handy for today’s animals, because this kind of taste receptors probably helps avoid eating poisonous (and bitter-tasting) food. 

Another interesting result from the analysis is that the eastern gorillas sustain a very small amount of DNA from the ghost population on their X chromosome. Therefore, it seems to be subject to negative selection, which can also be observed in humans and other species. One possible reason for this is that this chromosome exists only in one copy in male individuals, unlike the other chromosomes, and this is why harmful mutations may have a stronger effect. Tomas Marques-Bonet, also a professor of Genetics at the Department of Medicine and Life Sciences (MELIS) at UPF says, "Our study gives us a better insight into the evolutionary history of gorillas and provides a valuable contribution to help us better understand which effects gene flows from extinct populations can have on current populations." "Evolutionary genetics is important", adds Harvinder Pawar, first author of the study, "so that we can learn more about what distinguishes us humans from other apes." 

IU researchers diagnose Indianapolis Zoo orangutan with rare genetic disease


Peer-Reviewed Publication

INDIANA UNIVERSITY SCHOOL OF MEDICINE

Mila 

IMAGE: MILA IS A SIX-YEAR-OLD ORANGUTAN BORN AT THE INDIANAPOLIS ZOO. (SOURCE: FRED CATE, INDIANAPOLIS ZOO) view more 

CREDIT: INDIANAPOLIS ZOO, FRED CATE




NDIANAPOLIS—Researchers from Indiana University School of Medicine have diagnosed a Sumatran Orangutan at the Indianapolis Zoo with a rare genetic disease called Alkaptonuria. This is the first time the disease has been confirmed molecularly in a primate other than a human.

The six-year-old orangutan, named Mila, was born at the Indianapolis Zoo in 2016. Mila had a history of dark urine that turned brown upon standing since birth, but has never shown other symptoms. Researchers from the IU School of Medicine Department of Medical and Molecular Genetics collected and analyzed DNA, diagnosing Mila with alkaptonuria.

The research team recently published their findings in Molecular Genetics and Metabolism.

“This was an unexpected finding that ended years of questions about this animal,” said Marcus Miller, PhD, assistant professor of clinical medical and molecular genetics and principal investigator of the study. “We’re proud of this collaborative effort with the zoo that will hopefully lead to better care and treatment of Mila moving forward.”

Alkaptonuria is a rare, autosomal recessive disorder caused by deficiency of an enzyme called homogentisate 1,2-dioxygenase. As an infant, the only symptom is urine that turns black upon standing. Symptoms typically progress slowly, but can lead to chronic joint pain and decreased mobility later in life.

There have been several reports of the disease in non-human primates, but never any long-term studies, so it is unclear how the disease will impact Mila over time. However, having this diagnosis means that veterinarians don’t have to worry about other potential issues.

“I think the best part about these results is we can de-escalate some of the other studies that might have been recommended,” said Theodore Wilson, MD, assistant professor of clinical medical and molecular genetics. “We don’t need to use anesthesia for imaging, obtain a kidney biopsy or have guests or veterinarians worried. Even though her urine does still turn dark after being out in the environment, fortunately, now it doesn’t need to be a problem that is alarming.”

“People with this disease typically don’t develop symptoms until much later in life, usually in their 30s or 40s,” said Melissa Fayette, DVM, associate veterinarian for the Indianapolis Zoo. “We will continue to monitor Mila closely and perform regular preventive health exams to detect any secondary pathologies that may arise.”

In addition to Miller, Wilson and Fayette, other study authors include Kevin Booth, PhD; Ty Lynnes; Carolina Luna; and David Minich.

About Indiana University School of Medicine

IU School of Medicine is the largest medical school in the U.S. and is annually ranked among the top medical schools in the nation by U.S. News & World Report. The school offers high-quality medical education, access to leading medical research and rich campus life in nine Indiana cities, including rural and urban locations consistently recognized for livability.