Wednesday, December 18, 2024

FOSSILS

Fossil predator is the oldest known animal with “saber teeth”

“Vaguely dog-like” animal was one of the oldest-known close cousins of modern mammals



Field Museum

Life reconstruction 

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A reconstruction of the oldest known gorgonopsian in life.

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Credit: Illustration © Henry Sutherland Sharpe.




The first true mammals evolved roughly 200 million years ago, during the early days of the dinosaurs. But mammals are the last surviving members of an older group, called the therapsids. At first glance, many therapsids weren’t obviously mammal-like , but they also had subtle features that we recognize in mammals today, like a hole on the sides of their skull for the jaw muscle to attach and structures on their jaw bones that would eventually evolve into mammals' distinctive middle ear bones. In a new paper in the journal Nature Communications, scientists announce the discovery of a fossil therapsid that’s the oldest of its kind, and maybe the oldest therapsid ever discovered: a vaguely dog-like saber-toothed predator. 

The new fossil, which doesn’t have a species name yet, is a member of a group called the gorgonopsians. “Gorgonopsians are more closely related to mammals than they are to any other living animals,” says Ken Angielczyk, the Field Museum’s MacArthur Curator of Paleomammalogy in the Negaunee Integrative Research Center and a co-author of the paper. “They don’t have any modern descendents, and while they're not our direct ancestors, they're related to species that were our direct ancestors.”

Until now, the oldest known gorgonopsians lived roughly 265 million years ago. However, the new fossil is from 270-280 million years ago. “It is most likely the oldest gorgonopsian on the planet,” says Josep Fortuny, senior author of the article and head of the Computational Biomechanics and Evolution of Life History group at the Institut Català de Paleontologia Miquel Crusafont (ICP) in Spain.

The fossils were found in Mallorca (also sometimes spelled Majorca), a Spanish island in the Mediterranean Sea. But in the time of the gorgonopsians, Mallorca was part of the supercontinent of Pangea. 

“The large number of bone remains is surprising. We have found everything from fragments of skull, vertebrae, and ribs to a very well-preserved femur. In fact, when we started this excavation, we never thought we would find so many remains of an animal of this type in Mallorca,” explains Rafel Matamales, curator of the Museu Balear de Ciències Naturals (MUCBO | MBCN), research associate at the ICP, and first author of the article.

These bones allowed the researchers to reconstruct what the animal looked like and a little about its life. “If you saw this animal walking down the street, it would look a little bit like a medium-sized dog, maybe about the size of a husky, but it wouldn’t be quite right. It didn’t have any fur, and it wouldn’t have had dog-like ears,” says Angielczyk. “But it’s the oldest animal scientists have ever found with long, blade-like canine teeth.” These saber teeth suggest that this gorgonopsian was a top predator in its day.

The fact that this gorgonopsian predates its closest relatives by tens of millions of years changes scientists’ understanding of when therapsids evolved, an important milestone on the way to the emergence of mammals, and in turn it tells us something about where we come from.

“Before the time of dinosaurs, there was an age of ancient mammal relatives. Most of those ancient mammal relatives looked really different from what we think of mammals looking like today,” says Angielczyk. “But they were really diverse and played lots of different ecological roles. The discovery of this new fossil is another piece of the puzzle for how mammals evolved.”

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Figure from the paper showing the fossil bones that have been found of the new gorgonopsian.

Credit

Matamales-Andreu et al, illustration by Eudald Mujal / SMNS

 

Worsening heat waves pose unique risks to people living with neurodegenerative disease



UCLA Health researcher says changing climate requires overhaul to patient screening, checkup practices among medical providers



University of California - Los Angeles Health Sciences




As 2024 is set to end as Earth’s hottest year on record – breaking the previous record set in 2023– a UCLA Health researcher says people living with neurodegenerative diseases will be uniquely vulnerable to worsening heat waves because of a higher risk of heat-related complications.

In a commentary published in JAMA Neurology, Dr. Indu Subramanian said that doctors have a duty to strengthen the understanding of heat-related impacts on people living with diseases such as dementia or Parkinson’s disease and to develop updated solutions to protect these vulnerable patients in a warming world.

“This editorial makes clear that these deaths are preventable, and doctors can make a difference,” Subramanian said.

While more frequent and severe heat waves pose health risks to all people experiencing them, their impacts can be exacerbating among people with neurodegenerative disease due to symptoms or treatments associated with them, Subramanian said.

Heat has been shown to worsen neurodegenerative disease symptoms. In Parkinson’s disease, symptoms such as malfunctioning autonomic nervous system can increase the risk of dehydration, heat stroke and fainting caused by reduced blood flow to the brain. Symptoms of Parkinson’s disease and other conditions can also compromise sweating, which would only worsen especially in areas with high humidity. Subramanian said worsening symptoms can impair a person’s ability to perform regular activities such as taking medication, turning on air conditioners, rehydrating or taking a cold shower to keep cool.

Some medications that treat these diseases, such as anticholinergics and tricyclics, can inhibit functions such as sweating and blood flow to the skin that help to passively cool the body.

One study in 2020 led by the University of Malta found statistically significant increases of more than 10% for both Parkinson’s disease-related mortality and hospital admissions at temperatures of only 1 degree Fahrenheit over a threshold of 93 degrees Fahrenheit. A separate study in 2019 from the Queensland University of Technology that was cited by Subramanian found similar trends for Alzheimer’s disease patients. 

The Queensland University of Technology study also found an association between heat-related mortality and the amount of green space near a person’s residence. Green space works to prevent heat islands by providing shade, deflecting radiation and releasing moisture. The study found people living near low amounts of green space had three times the risk of heat-related mortality.

As the U.S. population of older residents increases, so has the number of people living with neurodegenerative diseases such as dementia. Thermoregularity, the ability to maintain body temperature, is often compromised among older people. Heat-related complications are also higher for men, though the reason for this increased risk is still unclear, Subramanian said. The increasing social isolation among older adults can also increase risk of heat-related issues because of lack of early detection.

“I was surprised how many patients view us docs or health care providers as their only touch point with the world outside their house,” Subramanian said.

To address these many issues, Subramanian states that medical providers and institutions must establish best-practice guidelines and tie these quality measures to reimbursement and certification. One example would be to have doctors regularly screen people with neurodegenerative disease for social isolation and to connect them to resources. The increased utilization of telemedicine can also be used to have medical providers check in on high-risk patients and proactively contact them during high temperature periods, Subramanian said. Doctors can take early steps by providing early handouts to patients with information and resources.

“People with Parkinson’s disease and dementias are at risk for dying in heat waves and we can be proactive about preventing this,” Subramanian said.

The editorial was coauthored by Dr. Ali Saad of the University of Colorado, Aurora who is one of the only neurologists who did a Climate Change Fellowship. Dr. Subramanian is also board- certified in Integrative Medicine.

 

Hyperspectral imaging lidar system achieves remote plastic identification

New technology could remotely identify various types of plastics, offering a valuable tool for future monitoring and analysis of oceanic plastic pollution

Peer-Reviewed Publication

Optica

Experimental Setup 

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The prototype hyperspectral Raman imaging lidar system included a pulsed 532- nm green laser and a 2D imaging spectrometer with a gated ICCD.

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Credit: Toshihiro Somekawa, Institute for Laser Technology

WASHINGTON — Researchers have developed a new hyperspectral Raman imaging lidar system that can remotely detect and identify various types of plastics. This technology could help address the critical issue of plastic pollution in the ocean by providing better tools for monitoring and analysis.

“Plastic pollution poses a serious threat to marine ecosystems and human livelihoods, affecting industries like fisheries, tourism and shipping,” said research team leader Toshihiro Somekawa from the Institute for Laser Technology in Japan. “To manage and protect the marine environment, it’s essential to assess the size, concentration and distribution of plastic debris, but traditional lab-based methods are often time-consuming, labor-intensive and expensive.”

In the Optica Publishing Group journal Optics Letters, the researchers describe their new system, which is compact and optimized for low energy consumption, making it suitable for use aboard a drone. They show that the system can identify plastics that are 6 meters away with a relatively wide field of view of 1 mm x 150 mm.

“A drone equipped with our lidar sensor could be used to assess marine plastic debris on land or in the sea, paving the way for more targeted cleanup and prevention efforts,” said Somekawa. “The system could also be used for other monitoring applications, such as detecting hazardous gas leaks.”

Achieving remote detection

The researchers previously demonstrated a monitoring system based on a flash Raman lidar technique in which bandpass filters were matched to each measurement target for detection in a successive manner. This technique, however, isn’t practical for detecting marine plastics because switching the filters would hinder instantaneous 3D ranging and detection.

Other research groups have explored using hyperspectral Raman imaging to monitor plastic pollution. This technique combines Raman spectroscopy with imaging to capture spatially resolved chemical information across a sample, producing detailed maps of molecular composition and structure. However, conventional hyperspectral Raman imaging can only detect targets that are close to the instrument.

For remote detection, the researchers combined lidar for distance measurement with hyperspectral Raman spectroscopy. They did this by building a prototype system that included a pulsed 532- nm green laser for lidar measurements and a 2D imaging spectrometer equipped with a gated intensified CCD (ICCD). The Raman signal backscattered from a distant target was detected as a vertical line, and the hyperspectral information contained in each point recorded horizontally. Using an ICCD camera that can be gated on a nanosecond time scale was essential for achieving the Raman lidar measurement with fine range resolutions.

Range-resolved Raman imaging

“We designed our system to acquire images and spectroscopic measurements simultaneously,” said Somekawa. “Since the Raman spectrum is unique for each plastic type, the imaging information can be used to understand the spatial distribution and type of plastic debris and hyperspectral information can be obtained from targets at any distance due to the pulsed laser enabling range-resolved measurements.”

The researchers tested their prototype system on a plastic sample consisting of a polyethylene sheet in the upper position and a polypropylene sheet in the lower position. From 6 meters away, the system was able to acquire the characteristic spectra of each plastic and produce images showing the vertical distribution of the plastics. The researchers say that the imaging pixel size of 0.29 millimeters with the ICCD camera at the stand-off distance of 6 meters implies that small plastic debris could be measured and analyzed using the hyperspectral Raman imaging lidar system.

Next, the researchers plan to use their system to monitor microplastics that are floating or submerged in water. This should be feasible since laser light around 532 nm transmits effectively through water, enabling better detection in aquatic environments.

Paper: T. Somekawa, S. Kurahashi, S. Matsuda, A. Yogo, H. Kuze, “Remote Detection and Identification of Plastics with Hyperspectral Raman Imaging Lidar,” Opt. Lett., 50, 57-60 (2024).
DOI: https://doi.org/10.1364/OL.544096


About Optics Letters

Optics Letters offers rapid dissemination of new results in all areas of optical science with short, original, peer-reviewed communications. Optics Letters accepts papers that are noteworthy to a substantial part of the optics community. Published by Optica Publishing Group and led by Editor-in-Chief Miguel Alonso, Institut Fresnel, École Centrale de Marseille and Aix-Marseille Université, France, University of Rochester, USA. For more information, visit Optics Letters.

About Optica Publishing Group (formerly OSA)

Optica Publishing Group is a division of Optica, the society advancing optics and photonics worldwide. It publishes the largest collection of peer-reviewed content in optics and photonics, including 19 prestigious journals, the society’s flagship member magazine, and papers and videos from more than 1,100 conferences. With over 490,000 journal articles, conference papers and videos to search, discover and access, our publications portfolio represents the full range of research in the field from around the globe.


Ocean microbe’s unusual pair of enzymes may boost carbon storage, study suggests



Stanford scientists have discovered multiple forms of a ubiquitous enzyme in microbes that thrive in low-oxygen zones off the coasts of Central and South America


 News Release 
Stanford University





Stanford researchers have found a surprising genetic twist in a lineage of microbes that may play an important role in ocean carbon storage. The microbes, known as blue-green algae or cyanobacteria, have two different forms of a ubiquitous enzyme that rarely appear together in the same organism. 

“This is one of those great examples of science where you go out looking for one thing, but you end up finding something else that’s even better,” said Anne Dekas, an assistant professor of Earth system science at the Stanford Doerr School of Sustainability and senior author of the Nov. 25 study in Proceedings of the National Academy of Sciences

Billions of years ago, long before plants arrived on the scene, cyanobacteria invented oxygenic photosynthesis. In the process of producing food from carbon dioxide and sunlight, the widespread microbes released oxygen into the air, making our planet’s atmosphere hospitable to the array of life on Earth today. “Cyanobacteria are arguably the most important life form on Earth,” said Dekas. “They oxygenated the atmosphere of Earth and created a biological revolution.”

Special cyanobacteria

Like plants, cyanobacteria use an enzyme called ribulose bisphosphate carboxylase, or RuBisCo, to convert carbon dioxide into biomass. One of the most abundant proteins in nature, RuBisCo comes in several forms: The most common type, known as form I RuBisCo, often uses a structure called a carboxysome to selectively react with carbon dioxide but not oxygen, allowing photosynthesis to proceed efficiently. Organisms with a less common type of the enzyme, known as form II, lack a carboxysome and can effectively build biomass from carbon dioxide in environments where oxygen is scarce. 

Usually, organisms have only one form of RuBisCo, said lead author Alex Jaffe, a postdoctoral scholar in Earth system science. So he was surprised when he happened upon an exception to that rule while studying carbon fixation in ocean microbes. Jaffe was analyzing DNA from seawater samples collected from deep waters off the coasts of Central and South America when he noticed that some shallow water DNA samples had accidentally slipped in. He discovered that cyanobacteria in these samples seemed to have genes for both RuBisCo forms. “My initial reaction was this is probably wrong,” said Jaffe. 

Further research confirmed that both forms of the enzyme were present and actively used for photosynthesis in the cyanobacteria from shallow water, although additional testing will be required to understand how cyanobacteria use the two forms. “By having two versions,” said Jaffe, “it might allow you to remove more carbon dioxide from the water than if you only had one of them, or potentially to do it a little bit more efficiently.”  

Efficiency might be key to survival where the samples originated, in an oxygen minimum zone about 50 to 150 meters below the surface, where oxygen and light are both in short supply. “It’s very hard to live there,” said Dekas. “For a photosynthetic organism, when you have low light, you have little energy.”

Carbon storage and extra-efficient crops

The findings could help scientists anticipate how the ocean’s capacity to sequester carbon may shift as climate change expands low-oxygen zones. The revelation that some cyanobacteria have both forms of RuBisCo suggests they may store carbon more efficiently than previously understood and could proliferate along with expanding oxygen minimum zones. 

If two RuBisCos are in fact better than one, the finding could also lead to more efficient crop production. For decades, researchers have tried to engineer form I RuBisCo to enable crops that grow more with less fertilizer and water. “We’re looking forward to continuing to think about this with people who work on the plant engineering side to see whether it might yield some fruit, literally and metaphorically,” said Jaffe.

The findings gave Jaffe a new appreciation for life’s ability to adapt to challenging environments. “These genes, despite being central to organisms’ metabolism, can actually be quite flexible and can be reconfigured and shuffled in ways that we didn’t expect,” he said.


Co-authors include Navami Jain, MS ’24, who worked on the research as a graduate student in biomedical informatics in the Stanford School of Medicine. Additional co-authors are affiliated with University of Washington; University of California, Berkeley; the Joint BioEnergy Institute; and Lawrence Berkeley National Laboratory. 

This research was funded by the Stanford Science Fellows program, the National Science Foundation, and the Simons Foundation.