Wednesday, June 28, 2023

Researchers’ warning on childhood vaccination target


A third of under-fives attending a Paediatric Emergency Department (PED) and who are eligible for pre-school boosters have unmet vaccination need according to research from Lancaster Medical School


Peer-Reviewed Publication

LANCASTER UNIVERSITY




A third of under-fives attending a Paediatric Emergency Department (PED) and who are eligible for pre-school boosters have unmet vaccination need according to research from Lancaster Medical School.

The study published in BMJ Open examined the percentage of children aged between two months and five years who were up-to-date with their routine childhood vaccinations at their time of attendance at the Paediatric Emergency Department (PED) at North Manchester General Hospital (NMGH) – part of Manchester University NHS Foundation Trust (MFT) -  in October 2021.

Children and young people in Manchester have lower than average levels of health and wellbeing, around a third live in relative low-income households, and 1% are in care.

Looking at tetanus and measles, mumps, and rubella (MMR) vaccination (as a proxy for overall vaccination status), researchers found that a third of under-fives  were missing at least one dose.

The study was led by Professor Rachel Isba who is a Professor of Medicine at Lancaster Medical School, an NHS Consultant in Paediatric Public Health Medicine for Alder Hey Children’s Hospital in Liverpool, and an Honorary Consultant in Paediatric Public Health Medicine at Royal Manchester Children’s Hospital – also part of MFT.

The study found that in older age groups, many children were missing their tetanus boosters and only 1 in 5 of those eligible had received two doses of MMR. Those in younger age groups had vaccination coverage levels comparable to the local data, but still below the target of 95%.

Professor Isba said: “Vaccine-preventable diseases can be very serious and measles cases are on the increase. Those children eligible for pre-school boosters - tetanus and MMR2 - appear to have considerable unmet vaccination need. A hospital attendance provides an opportunity to check the vaccination status of children and young people.”

William Roberts, CEO of the Royal Society for Public Health, said : "This really important piece of research highlights that we must use every opportunity to support children and families to access vaccinations so that we can reach the coverage levels needed to protect communities. Children and young people have told RSPH that vaccines are important to their health, and so it is up to us to act collectively, ensuring children and families from all backgrounds can have their vaccination needs met. We know that people have vaccines if they are easily accessible and that is why initiatives like "Grab-a-jab" are so successful at reaching a wide range of communities."

Professor Isba said: “There are pockets of children with very low MMR vaccine coverage who are therefore at high risk of illness. Whilst the pandemic has had an impact, the observation that MMR2 uptake is considerably lower than tetanus booster when they are scheduled together warrants further investigation.

“Catch-up campaigns for MMR should include a focus on this cohort of children (who are now around six years old) and attendance at the Paediatric Emergency Department may offer an opportunity for us to offer an intervention.”

Dr Helen Wall, Clinical Director for Population Health, NHS Greater Manchester Integrated Care, said: “Measles, mumps and rubella are highly infectious diseases. They can make children extremely ill and lead to health complications such as deafness, fits and brain damage. Vaccinations are thoroughly tested and are one of the most important things we can do to protect ourselves, our children and those around us against ill health.

“It is never too late to catch up on any missed doses of MMR vaccination. You can contact your GP to check whether your child is up to date with their vaccinations and book an appointment.”

 

Keeping your backdoor secure—in your robust machine learning model


SUTD researchers developed AEGIS, the first and only technique that is able to detect backdoor attacks in robust machine learning models. Analysing robust models with AEGIS would improve the overall trustworthiness of artificial intelligence



Peer-Reviewed Publication

SINGAPORE UNIVERSITY OF TECHNOLOGY AND DESIGN

Fig. 1: An example of a typical backdoor attack (adapted from Wang et al. (2019) 

IMAGE: THE VISIBLE DISTRIBUTED TRIGGER IS SHOWN IN FIGURE 1(A) AND THE TARGET LABEL IS SEVEN (7). THE TRAINING DATA IS MODIFIED. WE SEE THIS IN FIGURE 1(B) AND THE MODEL IS TRAINED WITH THIS POISONED DATA. THE INPUTS WITHOUT THE TRIGGER WILL BE CORRECTLY CLASSIFIED AND THE ONES WITH THE TRIGGER WILL BE INCORRECTLY CLASSIFIED DURING THE INFERENCE, AS SEEN IN FIGURE 1(C). view more 

CREDIT: SUTD



Software systems are all around us—from the operating system of our computers to search engines to automation used in industrial applications. At the centre of all of this is data, which is used in machine learning (ML) components that are available in a wide variety of applications, including self-driving cars and large language models (LLM). Because many systems rely on ML components, it is important to guarantee their security and reliability.

For ML models trained using robust optimisation methods (that is, robust ML models), their effectiveness against various attacks is unknown. An example of a major attack vector is backdoor poisoning, which refers to compromised training data fed into the model. Technologies that detect backdoor attacks in standard ML models exist, but robust models require different detection methods for backdoor attacks because they behave differently than standard models and hold different assumptions. 

This is the gap that Dr Sudipta Chattopadhyay, Assistant Professor at the Information Systems Technology and Design (ISTD) Pillar of the Singapore University of Technology and Design (SUTD), aimed to close.

In the study ‘Towards backdoor attacks and defense in robust machine learning models’, published in Computers & Security, Asst Prof Chattopadhyay and fellow SUTD researchers studied how to inject and defend against backdoor attacks for robust models in a certain ML component called image classifiers. Specifically, the models studied were trained using the state-of-the-art projected gradient descent (PGD) method.

The backdoor issue is urgent and dangerous, especially because of how current software pipelines are developed. Asst Prof Chattopadhyay stated, “No one develops a ML model pipeline and data collection from scratch nowadays. They might download training data from the internet or even use a pre-trained model. If the pre-trained model or dataset is poisoned, the resulting software, using these models, will be insecure. Often, only 1% of data poisoning is needed to create a backdoor.”

The difficulty with backdoor attacks is that only the attacker knows the pattern of poisoning. The user cannot go through this poison pattern to recognize whether their ML model has been infected. “The difficulty of the problem fascinated us. We speculated that the internals of a backdoor model might be different than a clean model,” said Asst Prof Chattopadhyay.

To this end, Asst Prof Chattopadhyay investigated backdoor attacks for robust models and found that they are highly susceptible (67.8% success rate). He also found that poisoning a training set creates mixed input distributions for the poisoned class, enabling the robust model to learn multiple feature representations for a certain prediction class. In contrast, clean models will only learn a single feature representation for a certain prediction class.

Along with fellow researchers, Asst Prof Chattopadhyay used this fact to his advantage to  develop AEGIS, the very first backdoor detection technique for PGD-trained robust models. Using t-Distributed Stochastic Neighbour Embedding (t-SNE) and Mean Shift Clustering as a dimensionality reduction technique and clustering method, respectively, AEGIS is able to detect multiple feature representations in a class and identify backdoor-infected models.

AEGIS operates in five steps—it (1) uses an algorithm to generate translated images, (2) extracts feature representations from the clean training and clean/backdoored translated images, (3) reduces the dimensions of the extracted features via t-SNE, (4) employs mean shift to calculate the clusters of the reduced feature representations, and (5) counts these clusters to determine if the model is backdoor-infected or clean.

If there are two clusters (the training images and the translated images) in a model, then AEGIS flags this model as clean. If there are more than two clusters (the training images, the clean translated images, and the poisoned translated images), then AEGIS flags this model as suspicious and backdoor-infected.

Further, AEGIS effectively detected 91.6% of all backdoor-infected robust models with only a false positive rate of 11.1%, showing its high efficacy. As even the top backdoor detection technique in standard models is unable to flag backdoors in robust models, the development of AEGIS is important. It is critical to note that AEGIS is specialised to detect backdoor attacks in robust models and is ineffective in standard models.

Besides the ability to detect backdoor attacks in robust models, AEGIS is also efficient. Compared to standard backdoor defences that take hours to days to identify a backdoor-infected model, AEGIS only takes an average of five to nine minutes. In the future, Asst Prof Chattopadhyay aims to further refine AEGIS so that it can work with different and more complicated data distributions to defend against more threat models besides backdoor attacks.

Acknowledging the buzz around artificial intelligence (AI) in today’s climate, Asst Prof Chattopadhyay expressed, “We hope that people are aware of the risks associated with AI. Technologies powered by LLM like ChatGPT are trending, but there are huge risks and backdoor attacks are just one of them. With our research, we aim to achieve the adoption of trustworthy AI.”

An attack Model for AEGIS.

CREDIT

SUTD


 

More women are using single embryos during fertility treatment


Reports and Proceedings

EUROPEAN SOCIETY OF HUMAN REPRODUCTION AND EMBRYOLOGY




Copenhagen, Denmark: More women are having just one embryo transferred per cycle of fertility treatment to get pregnant, according to research presented at the 39th annual meeting of the European Society of Human Reproduction and Embryology (ESHRE) [1].

Preliminary data from the ESHRE European IVF-monitoring Consortium (EIM) [2] shows that nearly three in five (57.6%) out of all in vitro fertilisation (IVF) and intracytoplasmic sperm injection (ICSI) procedures in 2020 in Europe involved the transfer of a single embryo. This compares with a figure of just over half (55.4%) for the previous analysis in 2019.

Around a third (37.6%) of these treatments in 2020 involved the transfer of two embryos, 2.1% involved three, and a tiny minority (0.2%) four or above. The figures for 2019 were 39.9%, 2.6% and 0.2%, respectively.

The reduction in multiple embryo transfers meant that singleton babies accounted for 88.8% of all ART deliveries compared with 87.7% the previous year. A minority were twins (11%) and triplets (0.2%), a drop from 11.9% and 0.3% respectively in 2019.

The number of treatment cycles from 1 January until 31 December 2020 also show a slight drop compared with the year before, according to the preliminary information from 1 326 clinics in 38 European countries.

A total of 843 776 cycles were carried out in 2020 and over one million in 2019. However, the authors say that the dataset is not yet complete, and the number of cycles will be higher by the time the full data will be reported.

The ESHRE EIM report represents the largest data collection on medically assisted reproduction in Europe. Spain, France and Germany were among countries with the highest number of treatment cycles.

Lead author Dr Jesper Smeenk, from the Elisabeth-TweeSteden hospital, in Tilburg (The Netherlands), said: “These preliminary findings show that live births resulting from fertility treatment in Europe continue to rise.

Campaigns to raise awareness about multiple births have helped protect the health of women and their babies. The continued rise in single embryo transfer means women are less likely to face complications in pregnancy and during birth.

“The result has been that fertility treatments have become safer for mothers and babies without compromising success rates.” 

The ESHRE EIM data were provided by national registries, medical associations and scientific organisations.

A total of 843 776 treatment cycles were carried out by 1 326 clinics offering assisted reproductive technology (ART) services in 2020. These fertility centres represented 82% of all clinics registered in the participating countries.

The majority of treatment cycles involved ICSI compared with just IVF alone (315 814 vs 135 803). The fact ICSI has overtaken IVF reflects a trend that has been ongoing since 2002, say the authors.   

The number of cycles using frozen embryos was 279 126, which is comparable with 2019. Donated eggs were used in 60 521 treatment cycles, preimplantation genetic testing (PGT) in 47 793, and frozen eggs in 4 375.

A minority of cycles (344) featured in vitro maturation (IVM), which is a relatively new technique that does not require hormone drugs. This is because, after collection, the eggs are matured in the embryology lab, not in a woman’s body.

In addition, 1 209 institutions carried out 199 362 treatment cycles with intrauterine insemination (IUI) where sperm is injected directly into the womb. A total of 29 countries used the partner’s semen for IUI, and 22 used a donor’s (147 711 cycles versus 51 651, respectively).

Fifteen countries carried out a total of 18 270 fertility preservation procedures including egg, semen and ovarian tissue freezing. These techniques, which are often used to help cancer patients become biological parents in future, were carried out on patients both pre- and post-puberty.

Overall, clinical pregnancy rates [3] reported in 2020 for fresh embryo cycles were similar to those observed in 2019. The figures for IVF per aspiration – where a fine needle is used to retrieve eggs from a woman’s follicles – were 27.9% in 2020 versus 28.5% in 2019; and 32.9% in 2020 versus 34.6% in 2019 per embryo transfer. For ICSI, the rates were 24.3% and 32.2% in 2020 versus 26.2% and 33.5% in 2019, respectively, and 50.4% in 2020 versus 50.5% in 2019 for fresh embryo transfers with donated eggs.

This trend was repeated for pregnancy rates using frozen embryos per thawing cycle (34.6% in 2020 versus 35.1% in 2019), and using frozen eggs per thawing cycle (45.3% in 2020 versus 44.8% in 2019).

The authors say in their presentation that the findings are, for now, somewhat compromised by incomplete data returns, notably from the UK and some other smaller countries. On this basis, the authors say the results should be interpreted with caution and conclusions drawn when the complete report is published.

The chair of ESHRE, Professor Carlos Calhaz-Jorge from the Northern Lisbon Hospital Centre and the Hospital de Santa Maria in Lisbon (Portugal), was not involved in this research. He said: “Multiple births are a known risk factor for complications in pregnancy and childbirth, and can affect a child’s development.

“The hope is that this upwards trend in single pregnancies, as highlighted by the EIM data, continues. 

“Clinics must always prioritise the safety of patients who undergo fertility treatment, and that of their offspring.”

(ends)

[1] Presentation no: O-153, “Assisted Reproductive Technology (ART) in Europe 2020 and development of a strategy of vigilance: Preliminary results generated from European registers by the ESHRE EIM Consortium”, presented by J Smeenk, session 48: European and Global ART monitoring, Hall D1, 11.45 hrs CEST, Tuesday 27 June 2023.

[2] This is the 24th ESHRE report based on data collected and analysed by EIM which is a group of representatives of national registries on assisted reproductive technology (ART). Since its first report in 1997, EIM has recorded almost 14 million treatments, with 2.8 million children born based on information from national registries, clinics, or professional societies. The findings have been reported in 23 manuscripts published in Human Reproduction and Human Reproduction Open.

[3] Clinical pregnancy refers to a pregnancy confirmed by an ultrasound scan that shows one or more gestational sacs – the fluid-filled structure surrounding an embryo – or definitive clinical signs of pregnancy.

Notes for editors
According to the UK Academy of Medical Science’s press release labelling system, this is a non-peer reviewed observational study in people.

Funding: none

The European Society of Human Reproduction and Embryology (ESHRE) is a European non-profit organisation with international membership, whose main mission is to promote the study and research of reproductive science and medicine as well as the treatment of infertility. Established in 1984, the Society now comprises more than 9.000 members and has become the leading Society in reproductive science and medicine worldwide. Our members are medical professionals, scientists and researchers working in reproductive science, reproductive medicine and embryology. We work in close partnership with the patient organisation Fertility Europe. The ESHRE annual meeting attracts over 11,000 clinicians, researchers, scientists, exhibitors. In 2022, participants from 130 countries attended. Seven of the top ten countries represented were European.

Frontiers and the World Economic Forum collaboration reveals the Top 10 Emerging Technologies of 2023 report


Business Announcement

FRONTIERS

Frontiers and WEF Top 10 Emerging Technologies of 2023 report 

IMAGE: FRONTIERS AND WEF TOP 10 EMERGING TECHNOLOGIES OF 2023 REPORT view more 

CREDIT: FRONTIERS



The Top 10 Emerging Technologies of 2023 report co-published by open access publisher Frontiers and the World Economic Forum has been presented today. The report identifies those technologies poised to have the biggest positive impact on society over the next three to five years. Curated by an international steering group of experts, the technologies were selected from nearly 100 contenders based on criteria including novelty, applicability, depth, and power. As this year’s knowledge partner, Frontiers collaborated with the Forum to identify experts from its far-reaching research community to provide further analysis of the technologies. 

For more than a decade, the report has helped business leaders, innovators, policymakers, and other professionals across industries and disciplines anticipate developing technology and understand the associated risks and opportunities. The 2023 report has broadened its scope for the first time, incorporating a qualitative assessment of how each technology will impact people, the planet, prosperity, industry, and equity. These “impact fingerprints” are based on data gathered from more than 90 experts across 20 countries. They offer in-depth analysis of how the technology is predicted to influence society within the next five years. The academics were selected from Frontiers’ network of scientific journal editors, while industry leaders were selected from the WEF’s Innovator Communities. 

Top 10 Emerging Technologies of 2023 will also include a collection of Transformation Maps co-curated by Frontiers for each of the ten technologies:  

Hosted on the Forum’s Strategic Intelligence platform, these maps provide deeper insights and context on how the technology connects to other topics on the global agenda, in addition to highlighting the latest articles on the topic from trusted sources. A total of 15 Frontiers journals contributed to the report, including: 

The release of the report comes during the World Economic Forum’s 14th Annual Meeting of the Champions in Tianjin, People’s Republic of China, taking place 27-29 June 2023. In a return to the tradition of the Forum’s “Summer Davos,” the meeting gathers global leaders from business, government, civil society, international organizations, as well as from among innovators and academics. This year’s theme is ‘Entrepreneurship: The Driving Force of the Global Economy.’  

Frontiers’ chief executive editor, Frederick Fenter, who has served an integral role in the collaboration and is facilitating several sessions in Tianjin, said: "It is part of our mission to bring an actionable understanding of cutting-edge technology to all those in a position to accelerate the research-innovation cycle, including the leaders of business and industry. This report, and the sessions taking place over the next few days, will improve our awareness of ten technologies that promise to breakthrough, thus leading to important new products and services to the benefit of us all. We look forward to ongoing collaborations with the World Economic Forum as we continue to build bridges and open the dialogue among key players in research, industrial innovation, and policymaking.” 

Jeremy Jurgens, managing director of the World Economic Forum and head of the Centre for the Fourth Industrial Revolution, said: “New technologies have the power to disrupt industries, grow economies, improve lives, and safeguard the planet – if designed, scaled, and deployed responsibly. We hope that this year’s report serves as a powerful tool for business leaders and policymakers to unlock the transformative potential of emerging technologies and shape their inclusive adoption.”   

Additional information on the emerging technologies and insights from Frontiers’ network of editors is available in a series of blog posts: 

Seasonal specialization in butterflies determine responses to a changing climate


Peer-Reviewed Publication

STOCKHOLM UNIVERSITY

Loke von Schmalensee 

IMAGE: LOKE VON SCHMALENSEE view more 

CREDIT: KALLE TUNSTRÖM



Summer and winter seasons constitute vastly different living conditions for animals and plants in many parts of the world. So how have different organisms evolved to cope with this variation? A study by researchers at Stockholm University published in Nature Communications investigates this question by studying two closely related butterfly species, the small white butterfly and the green-veined white butterfly.

– Our approach to looking at seasonal adaptations can help us understand how species will respond to changing conditions in the future, says Loke von Schmalensee, a doctoral student in ecology at the Department of Zoology at Stockholm University.

In the study, the research team examined seasonal adaptations in two closely related butterfly species, the small white butterfly and the green-veined white butterfly.

– Superficially, the butterflies are alike. Both are medium-sized and white, and under common conditions, they generally prefer to lay eggs on the same type of cruciferous plants. They co-occur in much of Sweden, and where they do, their two annual generations coincide in time, says Loke von Schmalensee.

In other words, the small white butterfly and the green-veined white butterfly are ecologically very similar. Despite this, by analysing observations of butterflies reported by citizen scientists at www.artportalen.se, the research team discovered that the two species differ drastically in how their two annual generations differ in size. The small white butterfly's first annual generation during spring and early summer (consisting of newly hatched butterflies that have overwintered as pupae) is much smaller in number than the second, late-summer, generation. The green-veined white butterfly, on the other hand, has two relatively even-sized generations.

– The small white butterfly is better than the green-veined white butterfly at reproducing over the summer but has poorer winter survival. It appears to be a 'summer specialist' and the green-veined white butterfly a 'winter specialist'. This is reflected in a range of temperature adaptations, says Loke von Schmalensee.

For example, the small white butterfly prefers to lay eggs in warmer places during the summer than does the green-veined white butterfly, and this preference difference corresponds to differences in physiological temperature adaptations.

– In lab experiments, we show that the heat-loving small white butterfly both grows and develops faster under warm conditions than the green-veined white butterfly, also with higher survival chances under extreme heat. In turn, the green-veined white butterfly copes better with cold overwintering conditions. When individuals experience contrasting seasons throughout their lives, it seems that there are several evolutionary solutions to the seasonal challenges. Maximizing gains during the summer season, perhaps at the expense of winter survival, is a viable strategy – investing in winter adaptations is another, says Loke von Schmalensee.

The heat-adapted ‘summer specialist,’ the small white butterfly, has performed better over the past decade than the ‘winter specialist’, the green-veined white butterfly. On the other hand, the small white butterfly appears incapable of spreading as far north as the green-veined white butterfly, as the summer season then becomes too short to produce two generations. Without a second generation for the small white butterfly populations to recover from the winter losses, they collapse.

– Because of this, northern latitudes or high mountains might constitute important refugia for 'winter specialists' in a warming world. This is an example of how our results can help us predict organisms' responses to a changing climate, says Loke von Schmalensee.
 

A small white butterfly (left) and a green-veined white butterfly meeting (right) meeting head to head in nature.

CREDIT

Isabelle Siemers

Loke von Schmalensee translocates lab-grown rapeseed plants near a temperature logger to investigate the butterflies’ temperature preferences in nature.

CREDIT

Pauline Caillault

Observations of Pieris rapae (red area n = 10,236) and P. napi (blue area, n = 20,492) within their common Swedish geographical range over the years 2010–2021. Both species display two distinct flight peaks, but in P. rapae the relative size of the spring peak, constituted by overwintering individuals, is much smaller than in P. napi. Data from the Swedish Species Information Centre54.

CREDIT

Olle Lindestad


How the evolution of tooth enamel tissue unfolded


Peer-Reviewed Publication

UNIVERSITY OF ZURICH




Studies of mammalian evolution often rely on the analyses of teeth, which are the best-preserved parts of fossilized skeletons. Tooth morphology and the composition of enamel – the most mineralized tissue of the body – constitute important criteria for speciation events that occurred over 200 million years of evolution. These evolutionary adaptations, which are linked to genetic modifications, have contributed to the extensive diversification of cell types in animals.

A team of researchers from the Center of Dental Medicine at the University of Zurich has identified the Notch pathway as the key gene network that is responsible for changes in tooth shape and enamel composition during evolution. The Notch pathway is an ancient, evolutionary conserved signaling mechanism that controls cell-fate decisions and proper morphogenesis of most organs, including teeth.

The evolution of teeth depends on Notch signaling

Using genetically modified mouse models, the research team of Thimios Mitsiadis, professor of oral biology at the Center of Dental Medicine at UZH, analyzed the effects of the Notch-ligands in teeth. Absence of those ligand molecules affected tooth morphology and enamel formation due to the alteration of numerous significant morphogenetic genes. Deregulation of the Notch pathway reverted the evolutionary cascade, thus generating less complex dental structures that are more reminiscent of the enameloid of fishes rather than that of mammalian enamel.

According to first author Mitsiadis, the study sheds new light on the Notch pathway as one of the crucial components for dental shape and enamel variations in evolution. “We hypothesize that the evolution of teeth depends on Notch signaling for the generation of new dental cell types from already existing primitive dental cell types, thus allowing the formation of more complex and unique dental structures such as tooth enamel,” Mitsiadis said.

Enamel malformations in humans

The correlation between Notch molecules and the generation and/or maintenance of distinct dental cell types could represent a general mechanism underlying the evolution of specialized cell types in mammals. “In teeth, deregulation of Notch signaling initiates the suppression of specific dental cell types that were acquired during evolution. Loss of these cells leads to the generation of enamel malformations and tooth morphological alterations,” Mitsiadis concludes. Modelling of these changes allows predictions of how Notch-associated mutations in humans could affect the morphology and enamel of their teeth.

 

Literature:

Thimios A Mitsiadis et al.  Notch Signaling Pathway in Tooth Shape Variations throughout Evolution. Cellular and Molecular Life Sciences, June 19, 2023. DOI: 10.1007/s00018-023-04831-7

 

Contact:

Prof. Dr. Thimios Mitsiadis

Institute of Oral Biology

University of Zurich

Phone: +41 44 634 33 90

E-mail: thimios.mitsiadis@zzm.uzh.ch