New genetic pathway unlocks drought-resistant cucumbers with fewer branches
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CsTIE1 interacts with CsAGL16 to coordinate cucumber branch outgrowth and drought tolerance.
view moreCredit: Horticulture Research
A new discovery has unveiled a genetic module, CsTIE1-CsAGL16, that simultaneously regulates lateral branch development and drought tolerance in cucumbers. This dual-function genetic pathway offers a promising new approach to breeding cucumber varieties that are both resilient to water scarcity and tailored to market preferences. By deciphering how these genes coordinate water conservation and branch growth, researchers have opened new doors for improving crop adaptability and productivity in the face of climate change.
Drought stress poses a major challenge to global agriculture, particularly for water-intensive crops like cucumbers. Meanwhile, lateral branch development is a key trait in cucumber cultivation, with different markets demanding either compact or more branched varieties. Although the abscisic acid (ABA) signaling pathway is known to play a crucial role in drought response, the precise genetic links between ABA metabolism, branch growth, and drought resilience remain poorly understood. Addressing these gaps is crucial for developing cucumber varieties that can withstand harsh environmental conditions while meeting consumer and industry demands.
Published (DOI: 10.1093/hr/uhae279) on October 2, 2024, in Horticulture Research, a research team from China Agricultural University has identified the CsTIE1-CsAGL16 module as a genetic switch that influences both lateral branch outgrowth and drought tolerance. The study reveals that CsTIE1 interacts with CsAGL16 to regulate ABA catabolism, a process that affects both branch architecture and a plant’s ability to endure drought stress. This breakthrough provides a molecular blueprint for breeding cucumbers that thrive in water-limited environments while maintaining optimal growth characteristics.
The researchers found that CsTIE1 physically interacts with CsAGL16, triggering the expression of the ABA catabolism gene CsCYP707A4. This interaction not only promotes lateral branch growth but also enhances drought tolerance by modulating stomatal closure and root development. Genetic modifications revealed a striking pattern: CsTIE1 mutations resulted in shorter branches and reduced drought resistance, whereas overexpression of CsAGL16 reversed these effects, producing longer branches and improved drought tolerance. Intriguingly, under drought conditions, the plant suppresses CsCYP707A4, redirecting its energy from growth to survival—a sophisticated feedback mechanism that underscores the adaptive flexibility of the CsTIE1-CsAGL16 pathway.
“This study represents a major step forward in understanding how plants balance growth and stress responses,” said Dr. Jianyu Zhao, the study's corresponding author. “By targeting the CsTIE1-CsAGL16 module, we can engineer cucumber varieties that thrive in water-scarce environments while meeting market-specific demands for branch structure.”
The implications of this discovery extend far beyond cucumbers. By fine-tuning the CsTIE1-CsAGL16 pathway, breeders can develop water-efficient cucumber varieties tailored for regions prone to drought, such as China and other arid agricultural zones. Furthermore, this genetic strategy could be applied to other crops, offering a transformative approach to improving global food security. The ability to simultaneously control drought tolerance and plant architecture through a single genetic module marks a significant leap forward in crop science, paving the way for sustainable and high-efficiency agricultural practices in a changing climate.
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References
DOI
Original Source URL
https://doi.org/10.1093/hr/uhae279
Funding information
This work was supported by grants from the National Natural Science Foundation of China (32025033 and 32372699), Pinduoduo-China Agricultural University Research Fund (PC2023B01002) and The Construction of Beijing Science and Technology Innovation and Service Capacity in Top Subjects (CEFF-PXM2019_014207_000032).
About Horticulture Research
Horticulture Research is an open access journal of Nanjing Agricultural University and ranked number one in the Horticulture category of the Journal Citation Reports ™ from Clarivate, 2023. The journal is committed to publishing original research articles, reviews, perspectives, comments, correspondence articles and letters to the editor related to all major horticultural plants and disciplines, including biotechnology, breeding, cellular and molecular biology, evolution, genetics, inter-species interactions, physiology, and the origination and domestication of crops.
Journal
Horticulture Research
Subject of Research
Not applicable
Article Title
The CsTIE1–CsAGL16 module regulates lateral branch outgrowth and drought tolerance in cucumber
Protecting crops: Researchers open up new avenue to combat a widespread plant virus
Martin-Luther-Universität Halle-Wittenberg
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With the help of the new active ingredient developed by MLU researchers, plants can be easily protected against the cucumber mosaic virus.
view moreCredit: Uni Halle / Heiko Rebsch
New RNA-based active agents reliably protect plants against the Cucumber mosaic virus (CMV), the most common virus in agriculture and horticulture. They were developed by researchers at the Martin Luther University Halle-Wittenberg (MLU). The active ingredients have a broad spectrum effect; a series of RNA molecules support the plant's immune system in combating the virus. In laboratory experiments, 80 to 100 per cent of the treated plants survived an infection with a high viral load, as the team reports in Nucleic Acids Research. Their paper has been selected as a "breakthrough article" by the journal. The researchers are now working on transferring the idea from the laboratory into practice.
Cucumber mosaic virus is a particularly devastating virus for crops. About 90 species of aphids transmit the virus, which affects more than 1,200 plant species. These include numerous agricultural crops such as squash, cucumbers, cereals and medicinal and aromatic plants. Infected plants are easily identified by a characteristic mosaic pattern on their leaves. Once infected, the plants fail to thrive and their fruits cannot be sold. To date, there exist no approved agents against CMV. However, the new work by researchers at MLU could provide a long-term solution. The basic idea is to fight the virus by directing the plant’s natural defences in the right direction.
When a virus infects a plant, it uses the plant's cells as a host. The virus multiplies via its genetic material in the form of ribonucleic acid (RNA) molecules in the plant cells. Once injected, these foreign RNA molecules trigger an initial response from the plant's immune system. Special enzyme scissors recognize and cut the viral RNA molecules. This process produces small interfering RNAs (siRNAs), which spread throughout the plant and trigger a second step of the immune response. The siRNA molecules bind to special protein complexes and guide them to the RNA molecules of the virus. Once there, the proteins begin to break down the harmful RNA molecules of the virus by converting them into harmless, degradable fragments.
"In general, this defence process is not very effective. A viral infection produces many different siRNA molecules, but only a few have a protective effect," says Professor Sven-Erik Behrens from the Institute of Biochemistry and Biotechnology at MLU. His team has developed a method to identify siRNA molecules that are highly efficient in the process. In a further important step, they were now able to combine several of these siRNA molecules into so-called efficient double-stranded RNA molecules (edsRNAs), which are particularly suitable for use in plants. These edsRNAs act as a kind of "package" that is broken down into the siRNAs soon after entering the plant cells. In this way, a large number of highly effective siRNA molecules can exert a protective, antiviral effect on the spot.
The team conducted numerous laboratory experiments on the model plant Nicotania benthamiana and was able to show that edsRNA-based active agents reliably protect against the Cucumber mosaic virus. "The plants in our experiments were infected with a very high viral load: all of our untreated plants died," explains Behrens. In contrast, 80 to 100 per cent of the treated plants survived. There’s another special advantage of edsRNA agents: when the package is broken down, a bunch of efficient siRNA molecules is produced that exclusively attack the virus at different sites. This significantly increases the protective effect. "RNA viruses such as the Cucumber mosaic virus are dangerous because they can evolve rapidly. In addition, the genetic material of this virus is made up of three separate parts, which can get mixed up, further increasing the chance of new mutations. To achieve maximum protection against the virus, our active ingredients target different parts of the genome," says Behrens. The team has also optimized the process of screening for efficient siRNAs and can adapt the procedure to target new viral mutations within two to four weeks. "Time is an important factor: when a new virus variant emerges, we can very quickly modify the active agent accordingly," Behrens explains. The approach may also be applied to other pathogens and pests.
Until now, the substances have been administered manually in the laboratory, either by injection or by rubbing them into the plant leaves. The team is working with pharmacist and drug delivery specialist Professor Karsten Mäder at MLU to make the RNA-based substances more durable and easier to apply to plants. For example, they could be sprayed on. At the same time, the researchers are planning field trials to test the RNA-based substances under real conditions. And they are talking to companies about future industrial production. In addition, potential new crop protection products still have to go through an approval process, so it will be some time before a product to combat Cucumber mosaic virus enters the market. "However, we are convinced that our approach is feasible. The first crop protection product with an RNA-based active ingredient was recently approved in the USA," says Behrens.
The editors of "Nucleic Acids Research" selected the paper by the MLU researchers as a "breakthrough article". Only two to three per cent of the articles published in "Nucleic Acids Research" receive this special designation every year. Around 1,300 articles appeared in the journal in 2024.
The work was funded by the German Research Foundation (DFG), the Federal Ministry of Education and Research (BMBF) and the state of Saxony-Anhalt.
Study: Knoblich M. et al. A new level of RNA-based plant protection - dsRNAs designed from functionally characterized siRNAs highly effective against Cucumber Mosaic Virus. Nucleic Acids Research (2025). doi: 10.1093/nar/gkaf136
The active ingredient reliably protects plants against the cucumber mosaic virus. Both plants were infected with the virus, but the specimen on the left in the picture was not protected.
Credit
Uni Halle / Heiko Rebsch
Journal
Nucleic Acids Research
Method of Research
Experimental study
Subject of Research
Not applicable
Article Title
A new level of RNA-based plant protection - dsRNAs designed from functionally characterized siRNAs highly effective against Cucumber Mosaic Virus
Article Publication Date
19-Mar-2025
