UK

Diane Abbott has Labour whip restored but 'won't stand in General Election'

28 May 2024, 19:21 | Updated: 28 May 2024, 22:46

Diane Abbott. Picture: Getty

By Kieran Kelly@kellyjourno

Diane Abbott has had the Labour whip restored but will not stand as Labour candidate at the upcoming General Election, it is understood.

Ms Abbott was suspended from Labour since April last year after comments she made about the Jewish community.

The former Labour MP said in the Observer that Jewish people did not experience racism “all their lives”.

ITV are reporting that the whip has been restored after The Times previously reported that under 'no circumstances' will she be allowed to stand for the Labour party on July 4.

Follow the LBC live General Election blog for all the twists and turns of the campaign train and listen live to LBC on Global Player, our official app

Asked about Ms Abbott's future earlier today, Labour leader Sir Keir Starmer told reporters earlier today: "The process overall is obviously a little longer than the fact-finding exercise.

"But in the end, this is a matter that will have to be resolved by the National Executive Committee and they'll do that in due course."

Speaking in The Observer last April, the former shadow home secretary under Mr Corbyn said Jewish people "undoubtedly experience prejudice", which is "similar to racism" but often used as if they are interchangeable.

She said that "many types of white people" - including redheads - can experience this prejudice, but that they are not "all their lives" subjected to racism.

Read More: Diane Abbott suspended as Labour MP over 'deeply offensive' comments suggesting Jews do not face racism

Read More: Tory donor's comments about Diane Abbott were ‘racist and wrong’, Rishi Sunak says

Ms Abbott added: "In pre-civil rights America, Irish people, Jewish people and Travellers were not required to sit at the back of the bus.

"In apartheid South Africa, these groups were allowed to vote. And at the height of slavery, there were no white-seeming people manacled on the slave ships."

Ms Abbott immediately had the whip removed.

A Labour Party spokesperson said at the time: "The Labour Party completely condemns these comments which are deeply offensive and wrong."

Diane Abbott given Labour whip back amid claims party 'blocking' her from General Election

Diane Abbott has apologised, and is understood to have attended an anti-Semitism awareness course in February - but discussions are ongoing about whether she'll be allowed to stand for Labour

Ms Abbott has apologised and attended an anti-semitism awareness course (


By Mikey Smith

Deputy Political Editor

THE MIRROR
28 MAY 2024

Diane Abbott's political future is hanging in the balance amid claims Labour were seeking to stop her standing in July's election.

Labour withdrew the whip from the long-standing MP for Hackney North and Stoke Newington in April 2023, after she suggested Jewish, Irish and Traveller people experienced prejudice, but not racism. She has since apologised, and is understood to have attended an anti-Semitism awareness course in February.

And it's understood she was given the party whip back on Tuesday afternoon.

But Keir Starmer today refused to say whether she would be allowed to stand as a Labour candidate in the election. Asked about the investigation finishing in December, the Labour leader said: "The process overall is obviously a little longer than the fact-finding exercise.

"But in the end, this is a matter that will have to be resolved by the National Executive Committee and they'll do that in due course."

The Times reported the party leadership had concluded she would not be allowed to stand under Labour's banner. And it was claimed party figures were attempting to negotiate a way to restore the party whip to her without her being a candidate - either through her agreeing to retire or being offered a seat in the House of Lords.

On Friday, Deputy leader Angela Rayner told the Mirror she wanted to see a resolution to the row. She said: "I would like to see a resolution, because I don't think Diane Abbott's career should end in that way. We've had our ding-dongs between us, but there's no question to me of her advocacy and her passion to make lives better.

"I think it'd be really regrettable if her career ends without this being resolved. That's not something I'm in control of, I don't have the full detail. There's a full investigation and I'm not a part of that. I don't get involved in complaints. But I would hope to see her career in a better place. I don't want her career to end under those circumstances."

Ms Abbott, who has been an MP since 1987, has said the process "has EVERYTHING to do with" Sir Keir. The veteran MP was suspended after she responded to an Observer article headlined: "Racism in Britain is not a black and white issue. It's far more complicated."

She wrote in a letter to the title: "It is true that many types of white people with points of difference, such as redheads, can experience this prejudice. But they are not all their lives subject to racism. In pre-civil rights America, Irish people, Jewish people and Travellers were not required to sit at the back of the bus." Ms Abbott later said she wished to "wholly and unreservedly withdraw my remarks and disassociate myself from them".

 

In international relations, it’s the message, not the medium

Research surveys show warnings issued by world leaders are taken equally seriously whether issued on social media or through formal statements.

MASSACHUSETTS INSTITUTE OF TECHNOLOGY

Over 180 world leaders maintain social media accounts, and some of them issue policy warnings to rivals and the public on these platforms rather than relying on traditional government statements. How seriously do people take such social media postings? 

A new study suggests the general public and policymakers alike take leaders’ social media posts just as seriously as they take formal government statements. The research, by MIT political scientists, deploys novel surveys of both the public and experienced foreign policy specialists.

“What we find, which is really surprising, across both expert audiences and public audiences, is that tweets are not necessarily seen as this form of cheap talk,” says Erik Lin-Greenberg, an MIT faculty member and co-author of a new paper detailing the results. “They’re viewed as the same type of signal as that being offered through more formal and traditional communications.”

The findings suggest that people have become so fully acclimatized to social media that they regard the medium as a vehicle for messages that have just as much credibility as those generated through the old-school method, in which official statements are released in formal language on official government documents. 

“One clue that sheds some light on our unexpected findings is that a slight majority of our survey respondents who read a tweet identified what they read as a White House press release,” says Benjamin Norwood Harris, an MIT doctoral candidate and co-author of the paper. “Respondents really seemed to believe that tweets were just another way presidents communicate in their official capacity.”

The paper, “Cheap Tweets?: Crisis Signaling in the Age of Twitter,” appears in the June issue of International Studies Quarterly. Greenberg is the Leo Marx Career Development Assistant Professor of the History and Culture of Science and Technology at MIT; Harris is a PhD candidate in MIT’s Department of Political Science who specializes in security studies and international relations. 

The study fits into a larger body of political science research in the area of “crisis signaling” — the way words and actions in international relations are interpreted, which is often critical to diplomacy. However, when it comes to the use of social media, “There’s been very little research that looks at the credibility of public signals,” Lin-Greenberg notes.

The research consisted of a multilayered set of surveys, conducted in 2021. Using the survey platform Lucid, the scholars surveyed 977 members of the general public about a hypothetical confrontation between the U.S. and Iran, using facsimiles of messages on Twitter (now known as X) and formal White House statements that might have been sent by U.S. President Joe Biden during such a scenario. Separately, the scholars also recruited foreign policy experts from the U.S., India, and Singapore, which all have active English-language think tank spheres, to take the same survey.

Asked to rate the credibility of tweets and official statements on a five-point scale, the public rated official press releases at 3.30 and tweets at 3.22. The policy experts gave a 3.10 rating to the official statement, and a 3.11 rating to the tweets.

“No matter how we cut the data, we just don’t see much difference in how respondents rated Tweets versus official statements,” Harris says. “Even when we vary the formality of the tweet language — including things like all caps and lots of exclamation points — we don’t find an effect.”

A follow-up layer of the survey then asked respondents about a related hypothetical conflict between the U.S. and Iran in 2026, with facsimile tweets and White House statements attributed to both Biden and former president Donald Trump, given that either could be president then. The aim was to see if different leaders influenced perceptions of the two forms of statements. 

But in this instance, the public and policy experts regarded tweets and official statements virtually equally seriously. Trump’s statements were given slightly more credibility overall, but with a strong partisan divide: Liberals took Biden’s statements to have more credibility, and conservatives took Trump’s statements to have more credibility. 

Overall, the study suggests that many people are simply unaffected by the medium in which a global leader might choose to issue a warning to leaders of other nations. In the surveys, participants were given the opportunity to describe qualitatively what shaped their responses; only about 2 percent cited the medium as an issue. 

As Harris notes, the survey data also indicate that slightly more than 51 percent of respondents believed a tweet constituted an officially released government statement. Additionally, about 73 percent of respondents thought tweets were generated in the same way as statements that have the official imprint of a national government. 

“People who see a tweet don’t really differentiate it in their minds. They don’t think the tweet is not an official statement,” Lin-Greenberg says. “About three-quarters of the population think it’s coordinated, whether it’s a tweet or an official statement.”

In the paper, the scholars suggest there is considerable room for follow-up research in this area. Among other things, future studies might compare the effect of social media statements to other types of communication, such as speeches. Scholars might also study other social media platforms or broaden the set of countries being studied. Such research, Lin-Greenberg and Harris conclude in the paper, “will further enrich our understanding of the interactions between emerging technology and international politics.”

 

Written by: Peter Dizikes, MIT News

Paper: Cheap Tweets?: Crisis Signaling in the Age of Twitter

https://academic.oup.com/isq/article-abstract/68/2/sqae067/7644224?redirectedFrom=fulltext

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JOURNAL

International Studies Quarterly

ARTICLE TITLE

Cheap Tweets?: Crisis Signaling in the Age of Twitter

 

How killifish embryos use suspended animation to survive over 8 months of drought

CELL PRESS

 

IMAGE: 

PAIR OF KILLIFISH

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CREDIT: ROGELIO BARAJAS AND XIAOAI ZHAThe African turquoise killifish lives in ephemeral ponds in Zimbabwe and Mozambique. To survive the annual dry season, the fish’s embryos enter a state of extreme suspended animation or “diapause” for approximately 8 months. Now, researchers have uncovered the mechanisms that enabled the killifish to evolve this extreme survival state. They report May 30 in the journal Cell that although killifish evolved diapause less than 18 million years ago, they did so by co-opting ancient genes that originated more than 473 million years ago. Through comparative analysis, the team showed that similar specialized gene expression patterns are also employed by other animals—including the house mouse—during diapause.

“The whole program is like day and night—there is life in the normal state and life in the diapause state, and the way this happened was by reshuffling or re-wiring the regulatory region of a whole set of genes,” says senior author and molecular biologist Anne Brunet (@BrunetLab) of Stanford University.

African turquoise killifish mature faster than any other vertebrate species, and adults live for only around 6 months, even in captivity. The fish reproduce rapidly before their watery homes disappear, but their embryos remain behind in the dry mud, ready to hatch when the next year’s rains come. Embryonic diapause also occurs in other vertebrate species, including fish, reptiles, and some mammals, but killifish diapause is remarkably extreme because it lasts for such an extended period (8 months on average and up to 2 years in the lab) and because killifish embryos enter suspended animation much later in development than other animals.

“It's roughly in the middle of development, and many organs are already formed by that stage— they have a developing brain and a heart which stops beating in diapause and then starts again,” says first author Param Priya Singh (@param_p_singh) of the University of California, San Francisco. “Killifish are the only vertebrate species that we know of that can undergo diapause so late in development.”

To understand diapause evolution, the team first characterized the gene expression of the African turquoise killifish (Nothobranchius furzeri) during different developmental stages. They focused on duplicated copies of genes called “paralogs,” because gene duplication is one of the primary mechanisms by which new genes originate and specialize. Overall, the researchers identified 6,247 paralog pairs that exhibited specialized gene expression patterns during diapause. Surprisingly, they estimated that most of the diapause-specialized genes were “very ancient” paralogs, having originated more than 473 million years ago.

“Even though diapause evolved relatively recently, the genes that are specialized in diapause are really ancient,” said Brunet. “We found that most of the genes that specialize for diapause in killifish are very ancient paralogs, which means that they were duplicated in the common ancestor of all vertebrates.”

Since diapause also occurs in some other species of killifish, the researchers compared gene expression between embryos of the African turquoise killifish, the South American killifish (Austrofundulus limnaeus), which also undergoes diapause, and two killifish species that do not undergo diapause, the red-striped killifish (Aphyosemion striatum) and lyretail killifish (Aphyosemion austral).

They found significant overlap in gene expression patterns between the African turquoise and South American killifish, which evolved diapause independently of each other, but not in the two non-diapausing species. Likewise, the researchers found significant correlation in the gene expression patterns of house mouse (Mus musculus) embryos during diapause and showed that diapause-specialized genes in mice also have very ancient origins.

“This suggests that the same mechanisms that enable diapause have been repeatedly co-opted for the evolution of diapause across distantly related species,” says Singh.

Next, the researchers explored how these diapause-specialized genes are regulated in the killifish. They identified several key transcription factors that control the altered gene expression patterns seen during diapause, including REST and FOXO3, which are known to be expressed during hibernation (a different form of suspended animation) in mammals. Notably, several of these regulatory genes are involved in lipid metabolism, which has a distinctive profile during diapause.

“One of the key elements of diapause is this special lipid metabolism,” said Brunet. “During diapause, they seem to have much higher levels of triglycerides and very long chain fatty acids, which are forms of storage and also perhaps aid with long-term protection of the organism’s membranes.”

The researchers plan to continue investigating how different species regulate diapause and to dig deeper into the role of lipid metabolism during diapause and other types of suspended animation.

“It's such a complex state that I think we are just scratching the surface,” said Singh. “We want to go deeper into specific aspects of how lipid metabolism is regulated during diapause, and we are also interested in examining the role of specific cell types during diapause.”

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This research was supported by the Glenn Foundation for Medical Research, the NOMIS Distinguished Scientist and Scholar award, the Stanford Center for Computational, Evolutionary, and Human Genomics, the National Institutes of Health, and the National Science Foundation

Cell, Singh et al. “Evolution of diapause in the African turquoise killifish by remodeling ancient gene regulatory landscape” https://www.cell.com/cell/fulltext/S0092-8674(24)00474-4

Cell (@CellCellPress), the flagship journal of Cell Press, is a bimonthly journal that publishes findings of unusual significance in any area of experimental biology, including but not limited to cell biology, molecular biology, neuroscience, immunology, virology and microbiology, cancer, human genetics, systems biology, signaling, and disease mechanisms and therapeutics. Visit http://www.cell.com/cell. To receive Cell Press media alerts, contact press@cell.com.

Male killifish

CREDIT

Rogelio Barajas and Xiaoai Zhao

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JOURNAL

Cell

DOI

10.1016/j.cell.2024.04.048 

METHOD OF RESEARCH

Experimental study

SUBJECT OF RESEARCH

Animals

ARTICLE TITLE

Evolution of diapause in the African turquoise killifish by remodeling ancient gene regulatory landscape

ARTICLE PUBLICATION DATE

27-May-2024

Harnessing green energy from plants depends on their circadian rhythms

Plant hydraulics create streaming electric potential in sync with the biological clock

AMERICAN INSTITUTE OF PHYSICS

 

IMAGE: 

PLANT HYDRAULICS DRIVE THE BIOLOGICAL PROCESS THAT MOVES FLUIDS FROM ROOTS TO PLANT STEMS AND LEAVES, CREATING STREAMING ELECTRIC POTENTIAL, OR VOLTAGE, IN THE PROCESS. THIS STUDY CLOSELY EXAMINED THE DIFFERENCES IN VOLTAGE CAUSED BY THE CONCENTRATIONS OF IONS, TYPES OF IONS, AND PH OF THE FLUID PLANTS TRANSPORT, TYING THE VOLTAGE CHANGES TO THE PLANT’S CIRCADIAN RHYTHM THAT CAUSES ADJUSTMENTS DAY AND NIGHT. ACCORDING TO THE AUTHORS, THIS CONSISTENT, CYCLIC VOLTAGE CREATION COULD BE HARNESSED AS AN ENERGY SOURCE.

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CREDIT: ANIRUDDHA GUHA

WASHINGTON, May 28, 2024 —When plants draw water from their roots to nourish their stems and leaves, they produce an electric potential that could be harnessed as a renewable energy source. However, like all living things, plants are subject to a circadian rhythm — the biological clock that runs through day and night cycles and influences biological processes. In plants, this daily cycle includes capturing light energy for photosynthesis and absorbing water and nutrients from the soil during the day and slowing its growth processes at night.

In a study published this week in Physics of Fluids, by AIP Publishing, the researchers from the Indian Institute of Technology Kharagpur detailed how biological processes produce voltage in plants and the impact of the cyclic day and night changes on this voltage.

“This streaming potential, essentially a consequence of the natural energy gathered in the plant, offers a renewable energy source that is continuous and can be sustainable over long periods,” author Suman Chakraborty said. “The question we wanted to answer was how much potential it can produce, and how is electric potential influenced by the plant’s biological clock?”

To find out, the authors inserted electrodes into the stems of water hyacinths and attached reservoirs with electrodes to pieces of lucky bamboo to closely examine how electrical potential changes depending on types of ions, ion concentration, and the pH of the fluid flowing through the plants.

“Our eureka moment was when our first experiments showed it is possible to produce electricity in a cyclic rhythm and the precise linkage between this and the plant’s inherent daily rhythm,” Chakraborty said. “We could exactly pinpoint how this is related to water transpiration and the ions the plant carries via the ascent of sap.”

The study quantified the voltage response originating from the movement of ions through the plant’s pathways that align uniquely with the plant’s daily rhythms. The authors discovered plants can actively moderate the flow of fluid or sap in sync with the day and night cycles. They also found the electric streaming potential increases with decreased concentration of ions or increased pH in the fluid.

“We not only rediscovered the plant’s electrical rhythm, articulating it in terms of voltages and currents, but we also provided insight into potentially tapping electrical power output from plants in a sustainable manner with no environmental impact and no disruption to the ecosystem,” Chakraborty said. “The findings could help develop biomimetic, nature-inspired systems that can address the global energy crisis with an eco-friendly, sustainable solution in which planting a tree not only relieves the crises of climate change and declining environmental quality, but also provides a way to harness electricity from it.”

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The article “How does the diurnal biological clock influence electrokinetics in a living plant?” is authored by Aniruddha Guha, Saumyadwip Bandyopadhyay, Chirodeep Bakli, and Suman Chakraborty. It will appear in Physics of Fluids on May 28, 2024 (DOI: 10.1063/5.0195088). After that date, it can be accessed at https://www.doi.org/10.1063/5.0195088.

ABOUT THE JOURNAL

Physics of Fluids is devoted to the publication of original theoretical, computational, and experimental contributions to the dynamics of gases, liquids, and complex fluids. See https://aip.scitation.org/journal/phf.

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JOURNAL

Physics of Fluids

DOI

10.1063/5.0195088 

ARTICLE TITLE

How does the diurnal biological clock influence electrokinetics in a living plant?

ARTICLE PUBLICATION DATE

28-May-2024

 

Tracking animals without markers in the wild

Researchers from the Cluster of Excellence Collective Behaviour developed a computer vision framework for posture estimation and identity tracking which they can use in indoor environments as well as in the wild.

UNIVERSITY OF KONSTANZ

Two pigeons are pecking grains in a park in Konstanz. A third pigeon flies in. There are four cameras in the immediate vicinity. Doctoral students Alex Chan and Urs Waldmann from the Cluster of Excellence Collective Behaviour at the University of Konstanz are filming the scene. After an hour, they return with the footage to their office to analyze it with a computer vision framework for posture estimation and identity tracking. The framework detects and draws a box around all pigeons. It records central body parts and determines their posture, their position, and their interaction with the other pigeons around them. All of this happened without any markers being attached to pigeons or any need for human being called in to help. This would not have been possible just a few years ago.

3D-MuPPET, a framework to estimate and track 3D poses of up to 10 pigeons
Markerless methods for animal posture tracking have been rapidly developed recently, but frameworks and benchmarks for tracking large animal groups in 3D are still lacking. To overcome this gap, researchers from the Cluster of Excellence Collective Behaviour at the University of Konstanz and the Max Planck Institute of Animal Behavior present 3D-MuPPET, a framework to estimate and track 3D poses of up to 10 pigeons at interactive speed using multiple camera views. The related publication was recently published in the International Journal of Computer Vision (IJCV).

Important milestone in animal posture tracking and automatic behavioural analysis
Urs Waldmann and Alex Chan recently finalized a new method, called 3D-MuPPET, which stands for 3D Multi-Pigeon Pose Estimation and Tracking. 3D-MuPPET is a computer vision framework for posture estimation and identity tracking for up to 10 individual pigeons from 4 camera views, based on data collected both in captive environments and even in the wild. “We trained a 2D keypoint detector and triangulated points into 3D, and also show that models trained on single pigeon data work well with multi-pigeon data,” explains Urs Waldmann. This is a first example of 3D animal posture tracking for an entire group of up to 10 individuals. Thus, the new framework provides a concrete method for biologists to create experiments and measure animal posture for automatic behavioural analysis. “This framework is an important milestone in animal posture tracking and automatic behavioural analysis", as Alex Chan and Urs Waldmann say.

Framework can be used in the wild
In addition to tracking pigeons indoors, the framework is also extended to pigeons in the wild. “Using a model that can identify the outline of any object in an image called the Segment Anything Model, we further trained a 2D keypoint detector with a masked pigeon from the captive data, then applied the model to pigeon videos outdoors without any extra model finetuning”, states Alex Chan. 3D-MuPPET presents one of the first case-studies on how to transition from tracking animals in captivity towards tracking animals in the wild, allowing fine-scaled behaviours of animals to be measured in their natural habitats. The developed methods can potentially be applied across other species in future work, with potential application for large scale collective behaviour research and species monitoring in a non-invasive way.

3D-MuPPET showcases a powerful and flexible framework for researchers who would like to use 3D posture reconstruction for multiple individuals to study collective behaviour in any environments or species. As long as a multi-camera setup and a 2D posture estimator is available, the framework can be applied to track 3D postures of any animals.

 

 

Key facts:

• Publication: Waldmann, U. & Chan, A.H.H. et al. 3D-MuPPET: 3D Multi-Pigeon Pose Estimation and Tracking. Int J Comput Vis (2024).
  DOI: https://doi.org/10.1007/s11263-024-02074-y.
• The article is part of a special issue on “Computer Vision Approaches for Animal Tracking and Modeling 2023” in IJCV.
• The framework is based on the 3D-POP dataset and the I-MuPPET
  framework, developed by researchers in the Cluster of Excellence
  Collective Behaviour.
• Alex Chan and Urs Waldmann are doctoral students in the field of biology and computer science at the Cluster of Excellence Collective Behaviour. Senior author Fumihiro Kano is a junior group leader at the Cluster of Excellence Collective Behaviour.
• The Centre for the Advanced Study of Collective Behaviour at the University of Konstanz is a global hotspot for the study of collective behaviour across a wide range of species and across scales of organization. It is a Cluster of Excellence within the framework of the German Excellence Strategy of the federal and state governments.

 

 

 

Note to editors:

Watch a video about 3D-MuPPET here: https://youtu.be/GZZ_u53UpfQ?si=pW0DQRM2oelku41c

 

You can download photos here:

1. https://www.uni-konstanz.de/fileadmin/pi/fileserver/2024_EXTRA/tierbewegungen_in_freier.jpg

 

1. https://www.uni-konstanz.de/fileadmin/pi/fileserver/2024_EXTRA/Tierbewegungen_in_freier_wildbahn.jpg

 

Caption: 3D-MuPPET offers a computer vision framework for 3D posture estimation and identity tracking of animals in indoor environments as well as in the wild.

Copyright: Alex Chan

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DOI

10.1007/s11263-024-02074-y 

New AI tool developed for advanced animal behavior analysis

The animal analysis model has vast applications, from biological research to robotics

Peer-Reviewed Publication

INSTITUTE FOR BASIC SCIENCE

 

IMAGE: 

(A) DISPLAYS THE MOVEMENT OF A MOUSE'S 3D ACTION SKELETON OVER TIME, WITH EACH COLOR REPRESENTING A STANDARDIZED BEHAVIOR REPERTOIRE (E.G., WALKING, STANDING).

(B) ONCE THE BEHAVIOR EMBEDDING SPACE IS CREATED, EXAMINING THE MOVEMENT PATTERNS OVER TIME CAN VERIFY THE QUALITY OF THE EMBEDDING. A GOOD EMBEDDING SPACE HAS CLUSTERS THAT CONTAIN THE SAME BEHAVIOR STATES, SHOWING EFFICIENT TEMPORAL MOVEMENT, WHILE A POOR EMBEDDING SPACE HAS CLUSTERS THAT CONTAIN DIFFERENT BEHAVIOR STATES, RESULTING IN INEFFICIENT TEMPORAL MOVEMENT.

(C) THE QUALITY OF TEMPORAL CONNECTIVITY CAN BE CALCULATED BY THE TOTAL VALUE OF THE PRODUCT OF TRANSITION PROBABILITIES BETWEEN CLUSTERS AND THE DISTANCE BETWEEN CLUSTERS (TPI). (LEFT) FREQUENT TRANSITIONS TO NEARBY CLUSTERS INDICATE GOOD TEMPORAL CONNECTIVITY. (RIGHT) FEW TRANSITIONS TO NEARBY CLUSTERS INDICATE POOR TEMPORAL CONNECTIVITY.

(D) CALCULATION METHOD OF THE TEMPORAL PROXIMITY INDEX (TPI) FOR EVALUATING THE TEMPORAL CONNECTIVITY OF THE BEHAVIOR EMBEDDING SPACE.

(E) WORKFLOW FOR UNSUPERVISED ANIMAL BEHAVIOR ANALYSIS.

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CREDIT: INSTITUTE FOR BASIC SCIENCE

Animal behavior analysis is a fundamental tool in various studies, ranging from basic neuroscience research to understanding the causes and treatments of diseases. It is widely applied not only in biological research but also across various industrial fields, including robotics. Recently, efforts have been made to accurately analyze animal behaviors using AI technology. However, there are still limitations for AI to intuitively recognize different behaviors like human observers can.

Traditional animal behavior research primarily involved filming animals with a single camera and analyzing low-dimensional data such as the time and frequency of specific movements. The analysis method provided AI with corresponding results for each piece of training data, akin to simply feeding AI with questions along with the answer key. While this method is straightforward, it requires time and labor-intensive human supervision to build the data. Observer bias is also a factor, as the analysis results can be distorted by the experimenter's subjective judgment.

To overcome those limitations, a joint research team led by Director C. Justin LEE of the Center for Cognition and Sociality within the Institute for Basic Science, and CHA Meeyoung, the Chief Investigator (CI) of the Data Science Group at the IBS Center for Mathematical and Computational Sciences (also a professor in the School of Computing at KAIST), has developed a new analytical tool called 'SUBTLE' (Spectrogram-UMAP-Based Temporal-Link Embedding). SUBTLE classifies and analyzes animal behavior through AI learning based on 3D movement information.

First, the research team recorded the movements of mice using multiple cameras, extracting the coordinates of nine key points such as the head, legs, and hips to obtain 3D action skeleton movement data over time. They then reduced this time-series data into two dimensions for embedding, a process that creates a collection of vectors corresponding to each piece of data, allowing complex data to be represented more concisely and meaningfully.

Next, the researchers clustered similar behavior states into subclusters and grouped these subclusters into superclusters representing standardized behavior patterns (repertoires), such as walking, standing, grooming, etc. During this process, they proposed a new metric called the Temporal Proximity Index (TPI) to evaluate behavior data clusters. This metric measures whether each cluster includes the same behavior state and effectively represents temporal movements, similar to how humans consider temporal information important when classifying behavior.

CI CHA Meeyoung stated, "The introduction of new evaluation metrics and benchmark data to aid in the automation of animal behavior classification is a result of the collaboration between neuroscience and data science. We expect this algorithm to be beneficial in various industries requiring behavior pattern recognition, including the robotics industry, which aims to mimic animal movements."

Director C. Justin LEE of the Center for Cognition and Sociality, who led this research commented, "We have developed an effective behavior analysis framework that minimizes human intervention while understanding complex animal behaviors by applying human behavior pattern recognition mechanisms. This framework has significant industrial applications and can also be used as a tool to gain deeper insights into the principles of behavior recognition in the brain."

Additionally, the research team transferred SUBTLE technology to Actnova, a company specializing in AI-based clinical and non-clinical behavior test analysis, in April last year. The team utilized Actnova's animal behavior analysis system, AVATAR3D, to obtain 3D movement data of animals for this research.

The research team has also made SUBTLE's code open-source, and a user-friendly graphical interface (GUI) to facilitate animal behavior analysis is available through the SUBTLE web service (http://subtle.ibs.re.kr/) for researchers who are not familiar with programming.

This research was published online on May 20th in the prestigious AI computer vision journal, the International Journal of Computer Vision (IJCV).

Figure 2. Schematic of the SUBTLE framework 

(A) The process of obtaining and analyzing 3D coordinates of key points from the movement of a mouse.

1) On the left, it shows the process of extracting 3D raw coordinates of the mouse's movements using the AVATAR3D, while on the right, it shows the process of processing and analyzing the 3D coordinate data obtained from AVATAR3D.

2) Extract the 3D action skeleton using the avatar.

3) Extract kinematic features and wavelet spectrograms from the key point coordinates.

4) Perform nonlinear t-SNE and UMAP algorithms; the embedding using UMAP developed in this study is called SUBTLE.

(B) Results of nonlinear mapping

It shows the embedding results using t-SNE and UMAP with an increasing number of clusters (k). t-SNE exhibits a tangled thread-like shape over time, whereas UMAP displays a well-aligned grid shape temporally. Additionally, UMAP consistently achieves higher TPI scores than t-SNE across all cluster numbers.

CREDIT

Institute for Basic Science

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JOURNAL

International Journal of Computer Vision

DOI

10.1007/s11263-024-02072-0 

METHOD OF RESEARCH

Experimental study

SUBJECT OF RESEARCH

Animals

ARTICLE TITLE

SUBTLE: An Unsupervised Platform with Temporal Link Embedding that Maps Animal Behavior

ARTICLE PUBLICATION DATE

28-May-2024