Wednesday, February 07, 2024

 

Thailand’s Iron Age Log Coffin culture


Ancient DNA helps researchers elucidate the structure of a prehistoric community from Southeast Asia

Peer-Reviewed Publication

MAX PLANCK INSTITUTE FOR EVOLUTIONARY ANTHROPOLOGY

Pang Mapha, Thailand 

IMAGE: 

CAVES AND ROCK SHELTERS DOT THE MOUNTAINS IN THE NORTHWESTERN HIGHLANDS OF THAILAND. OVER 40 IN MAE HONG SON PROVINCE CONTAIN WOODEN COFFINS ON STILTS, DATING BACK 1,000 - 2,300 YEARS.

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CREDIT: © SELINA CARLHOFF




Decidious and evergreen forests dominate the limestone karst formations of the northwestern highlands of Thailand. A vast number of caves and rock shelters intersperses the mountains. In over 40 such caves in Mae Hong Son province, large wooden coffins mounted on stilts, dating between 2,300 and 1,000 years ago, can be found. During the Iron Age period, each of these up to several-meter-long coffins was crafted from a single teak tree and features refined carvings of geometric, animal- or human-like shapes at the handles of both ends.

This archaeological assemblage has been studied for over two decades by members of the Prehistoric Population and Cultural Dynamics in Highland Pang Mapha Project, led by Professor Rasmi Shoocongdej, from the Department of Archaeology, Faculty of Archaeology, Silpakorn University. “Our research examines the relationship between humans and their environments in the seasonal tropics. One crucial aspect is the exploration of the social structure of these prehistoric communities, as well as explaining their connections with other pre-Neolithic, Neolithic and post-Neolithic groups in this region,” says Rasmi Shoocongdej, an archaeologist and senior author of the study.

To understand the genetic profile of the Log Coffin-associated communities, and the connection of individuals buried in different caves, an interdisciplinary team of researchers from Germany and Thailand has analyzed the DNA of 33 ancient individuals from five Log Coffin sites. The genomes recovered from the ancient individuals allow the first detailed study of the structure of a prehistoric community from Southeast Asia. “This project illustrates how ancient DNA can contribute to our understanding of past communities, their every-day life, and their cross-regional connections”, says first author Selina Carlhoff, a researcher in the Department of Archaeogenetics at the Max Planck Institute for Evolutionary Anthropology.

Complex genetic landscape in post-Neolithic mainland South East Asia

DNA preservation conditions in tropical regions are challenging and limit ancient population genetic studies from Southeast Asia. Most studies were limited to single individuals or small groups representing a country and period, and identifying only broad patterns, such as genetic admixture of farmers from the Yangtze River valley in southern China with the local Hòabìnhian hunter-gather-associated gene pool during the pre-Neolithic. The current study identifies two separate farmer-associated ancestries in the Log Coffin-associated individuals. One connected to the Yangtze River Valley, and another to the Yellow River valley in China. While previously published individuals from Myanmar, Laos and Vietnam also carry the Yellow River-related ancestry, it was absent in Bronze and Iron Age individuals from Ban Chiang in northeastern Thailand. These genetic differences mirror cultural differences between the two regions, such as mortuary practices and diet, and point towards separate influence spheres and connections to separate initial migration routes during the Neolithic period.

“Our results contribute to the emerging picture of a complex genetic landscape in post-Neolithic mainland Southeast Asia; however, this study provides successful genetic results from samples in limestone caves from the northwestern highlands of Thailand. Future studies of samples retrieved from open-air archaeological sites in the lowlands seem promising. If possible, they can provide additional insight into the genetic history of Mainland Southeast Asia,” says Wibhu Kutanan, a scientist from Naresuan University, Thailand, involved in the conception of the study. Detailed analyses of uniparental markers, which can reveal sex-specific demographic histories of Log Coffin-associated groups, will be provided in a forthcoming study. Further archaeogenetic studies in collaboration with local scholars, as well as novel admixture modelling and dating techniques, will illuminate the developing patterns better and enable direct connections to archaeological findings and hypotheses.

First community-level analysis in Southeast Asian archaeology

On the local scale, the study provided the first community-level analysis in Southeast Asian archaeology. To investigate the relations between individuals, the authors used genetic regions that are identical in two individuals, because they were inherited from a common ancestor. The analysis of so-called IBD blocks (identical-by-descent) helps tracing complex biological relatedness patterns within a site and across regions - and had so far not been applied in archaeogenetic studies of Southeast Asia. The study identified close genetic relatives buried in the same cave system, such as parents and children or grandparents and grandchildren. This cluster of closely related individuals was more distantly connected to all other individuals buried at the site.

While this suggests a selection of burial place under consideration of genetic relatedness, the more distant genetic relationships between Log Coffin sites, a low level of consanguinity, as well as high mitochondrial and low genome-wide diversity suggest that the Log Coffin-associated groups were rather large and constantly connected to each other across different river valleys. “This result is highly significant, since wooden coffins were also used in other archaeological cultures all over Southeast Asia. Comparing relatedness patterns and cross-regional genetic connections would be a fascinating future collaborative project which could potentially explain the cultural dynamics and population interactions within Southeast Asian and other regions”, says Rasmi Shoocongdej.

In Thailand’s Iron Age Log Coffin culture, coffins were made from a single teak tree and decorated with refined carvings of geometric or animal shapes on both ends.

CREDIT

© Selina Carlhoff

 

En route to Antarctica on board the Polarstern: TUD geoscientists research in the frozen South


Business Announcement

TECHNISCHE UNIVERSITÄT DRESDEN





“We want to gain a better understanding of the mechanisms that influence the ice sheet in its current state and future formation, and that can lead to potential instabilities,” explains Dr. Mirko Scheinert. “The interactions of the ice sheet with the Southern Ocean, the solid earth, and the atmosphere are especially crucial here.” The research is part of the multidisciplinary large-scale project, “East Antarctic Ice Sheet Instabilities” (EASI). TU Dresden is part of the responsible consortium consisting of universities, Helmholtz Centers, and partners from Australia and the Netherlands. 

The upcoming expedition is the consortium's third research expedition with the “Polarstern” since 2022. The TU Dresden research group, led by Dr. Mirko Scheinert, is currently supported by two Australian scientists and will focus primarily on geodetic-geophysical measurements in East Antarctica’s outer area. Using measurements from global navigation satellite systems (GNSS), the team aims to record the movement of the Earth's crust with the utmost precision, revealing its reaction to past and present changes in ice mass. Together with geophysical measurements, the data should contribute to a better understanding of the deformation and internal structure of the Earth in the East Antarctic region.  

A special challenge awaits the researchers on Gaussberg, where they are planning a field camp on land for several weeks. Gaussberg is an extinct volcano that erupted under the Antarctic ice around 56,000 years ago. It was discovered in March 1902 during the first German South Polar expedition led by Erich von Drygalski. Following in their footsteps, the scientists want to conduct a new survey of the area today. In addition to modern geodetic methods and drone photogrammetry, they will use geophysical measurements and detailed geological sampling.  

The expedition, led by Prof. Sebastian Krastel of Kiel University, will take just under ten weeks. Polarstern's research cruise PS141 is scheduled to end in Walvis Bay (Namibia) on April 14. EASI-2 took place from December 2023 to the end of January 2024 under the direction of GEOMAR, Helmholtz Centre for Ocean Research Kiel, EASI-1 began in early 2022 under the direction of the Alfred Wegener Institute, Helmholtz Centre for Polar and Marine Research (AWI).    

Daily updates and reports from the expedition: https://follow-polarstern.awi.de  


Deep learning forecasts Antarctic sea ice trends for 2024 – projected to remain close to historical lows


Peer-Reviewed Publication

INSTITUTE OF ATMOSPHERIC PHYSICS, CHINESE ACADEMY OF SCIENCES

Sea ice 

IMAGE: 

SEA ICE IN THE ANTARCTIC ROSS SEA, ON FEBRUARY 4 OF 2018. PHOTO COURTESY OF JIAN LIU.

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CREDIT: JIAN LIU




The year 2023 stands out as the warmest year on record globally, accompanied by the highest recorded ocean temperatures. Amidst these extreme and unusual climatic conditions, Antarctic sea ice extent (SIE), after breaking the second consecutive satellite-recorded low in February 2023, failed to recover at an average rate in the autumn and winter months. Instead, sea ice coverage has persistently set new monthly record lows for six consecutive months starting from May. On July 6, 2023, the Antarctic SIE anomaly reached an unprecedented -2.809 million square kilometers, nearly equivalent to the entire land area of Argentina.

The sustained breaking of historical lows in Antarctic sea ice has prompted international concern and scrutiny regarding the upcoming summer SIE in 2024. In November 2023, a research team based at Sun Yat-sen University and Southern Marine Science and Engineering Guangdong Laboratory (Zhuhai) initiated an assessment of the possibility of new record lows in February 2024, following the "least sea ice year". To address this question, they employed a Convolutional Long Short-Term Memory (ConvLSTM) neural network to construct a seasonal-scale Antarctic sea ice prediction model. Utilizing deep learning methods, the team conducted predictive research on Antarctic summer sea ice for the 2023/24 season. Their latest study, published in the journal Advances in Atmospheric Sciences on February 6, 2024, demonstrates the model's success in capturing interannual and interseasonal variability in SIE over an eight-year reforecast experiment. The model also accurately reproduced three historical summer lows in 2017, 2022, and 2023, with errors smaller than those in the European Centre for Medium-Range Weather Forecasts (ECMWF) predictions.

What lies ahead for Antarctic sea ice in 2024? The deep learning model's predictions from December 2023 to June 2024 indicate that Antarctic sea ice will remain near historical lows. However, it is highly unlikely to set a new record low in February 2024. The predicted SIE for February 2024 is expected to be 2.105±0.453 million square kilometers, slightly higher than the historic low in 2023.

According to the latest satellite observations, the SIE in December 2023 and January 2024 fell within the range of one standard deviation of the predicted value. Especially, the predicted SIE in January 2024 differs from the observed value by only 0.0015 million square kilometers, indicating the reliability of the prediction.

The results have been submitted to the SIPN-South international call for the 2023/24 season, making it one of the 15 participating contributions. The study underscores the significant promise of deep learning methods in Antarctic sea ice prediction.



 

EVs that go 1,000km on a single charge: Gel makes it possible



Peer-Reviewed Publication

POHANG UNIVERSITY OF SCIENCE & TECHNOLOGY (POSTECH)

Figure 1 

IMAGE: 

COVALENT LINKAGE FORMATION BETWEEN MICRO-SILICON AND GEL ELECTROLYTE VIA AN ELECTRON BEAM PROCESS

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CREDIT: POSTECH




Futuristic advancements in AI and healthcare stole the limelight at the tech extravaganza Consumer Electronics Show (CES) 2024. However, battery technology is the game-changer at the heart of these innovations, enabling greater power efficiency. Importantly, electric vehicles are where this technology is being applied most intensely. Today’s EVs can travel around 700km on a single charge, while researchers are aiming for a 1,000km battery range. Researchers are fervently exploring the use of silicon, known for its high storage capacity, as the anode material in lithium-ion batteries for EVs. However, despite its potential, bringing silicon into practical use remains a puzzle that researchers are still working hard to piece together.

 

Enter Professor Soojin Park, PhD candidate Minjun Je, and Dr. Hye Bin Son from the Department of Chemistry at Pohang University of Science and Technology (POSTECH). They have cracked the code, developing a pocket-friendly and rock-solid next-generation high-energy-density Li-ion battery system using micro silicon particles and gel polymer electrolytes. This work was published on the online pages of Advanced Science on the 17th of January.

 

Employing silicon as a battery material presents challenges: It expands by more than three times during charging and then contracts back to its original size while discharging, significantly impacting battery efficiency. Utilizing nano-sized silicon (10-9m) partially addresses the issue, but the sophisticated production process is complex and astronomically expensive, making it a challenging budget proposition. By contrast, micro-sized silicon (10-6m) is superbly practical in terms of cost and energy density. Yet, the expansion issue of the larger silicon particles becomes more pronounced during battery operation, posing limitations for its use as an anode material.

 

The research team applied gel polymer electrolytes to develop an economical yet stable silicon-based battery system. The electrolyte within a lithium-ion battery is a crucial component, facilitating the movement of ions between the cathode and anode. Unlike conventional liquid electrolytes, gel electrolytes exist in a solid or gel state, characterized by an elastic polymer structure that has better stability than their liquid counterparts do.

 

The research team employed an electron beam to form covalent linkages between micro-silicon particles and gel electrolytes. These covalent linkages serve to disperse internal stress caused by volume expansion during lithium-ion battery operation, alleviating the changes in micro silicon volume and enhancing structural stability.

 

The outcome was remarkable: The battery exhibited stable performance even with micro silicon particles (5μm), which were a hundred times larger than those used in traditional nano-silicon anodes. Additionally, the silicon-gel electrolyte system developed by the research team exhibited ion conductivity similar to conventional batteries using liquid electrolytes, with an approximate 40% improvement in energy density. Moreover, the team’s system holds significant value due to its straightforward manufacturing process that is ready for immediate application.

 

Professor Soojin Park stressed: “We used a micro-silicon anode, yet, we have a stable battery. This research brings us closer to a real high-energy-density lithium-ion battery system.”

 

This study was conducted with the support from the Independent Researcher Program of the National Research Foundation of Korea.

 

Does air pollution contribute to global cardiovascular disease–related deaths?


Peer-Reviewed Publication

WILEY




A recent analysis of data from nearly all World Health Organization member states clearly demonstrates a link between air pollution and mortality from cardiovascular diseases, with more of such deaths associated with air pollution in low-income countries compared with high-income countries.

In all 183 countries included in the Chronic Diseases and Translational Medicine study, ischemic heart disease-related deaths attributed to air pollution were higher than stroke-related deaths caused by air pollution. In 2019, outdoor air pollution caused 16 ischemic heart disease-related deaths per 100,000 people in high-income countries compared with 70 per 100,000 in low-income countries.

Also, in low-income countries, household air pollution due to polluting fuels and stoves for cooking was a major problem. It contributed to greater than 2-times more stroke-related deaths than outdoor air pollution (39 stroke-related deaths per 100,000 versus 19 per 100,000).

“Effective air pollution control along with the lifestyle modifications and disease management should be essential components of cardiovascular disease preventive strategies,” said corresponding author Nikolai Khaltaev, MD, of the Global Alliance against Chronic Respiratory Diseases, in Switzerland.

URL upon publication: https://onlinelibrary.wiley.com/doi/10.1002/cdt3.116

 

Additional Information
NOTE: 
The information contained in this release is protected by copyright. Please include journal attribution in all coverage. For more information or to obtain a PDF of any study, please contact: Sara Henning-Stout, newsroom@wiley.com.

About the Journal
Chronic Diseases and Translational Medicine is committed to advancing the prevention, diagnosis, and treatment of chronic conditions. As both a chronic diseases journal and a translational medicine journal, we serve as a central hub for disseminating the most recent research advancements among preclinical, translational, and clinical researchers in diverse established and emerging fields related to chronic diseases. Our mission is to drive improvements in global human health through our contributions.

About Wiley
Wiley is a knowledge company and a global leader in research, publishing, and knowledge solutions. Dedicated to the creation and application of knowledge, Wiley serves the world’s researchers, learners, innovators, and leaders, helping them achieve their goals and solve the world's most important challenges. For more than two centuries, Wiley has been delivering on its timeless mission to unlock human potential. Visit us at Wiley.com. Follow us on FacebookXLinkedIn and Instagram.

 

Researchers develop and test the first unmanned forestry machine


Peer-Reviewed Publication

WILEY




A study published in the Journal of Field Robotics assessed the world’s first unmanned machine designed for autonomous forestry operations. Investigators demonstrated that using computer vision, autonomous navigation, and manipulator control algorithms, their newly developed machine can safely, accurately, and efficiently pick up logs from the ground and maneuver through various forest terrains without the need for human intervention.

The research represents a significant milestone in the field of autonomous outdoor robotics, which could reduce the need for human labor, thereby increasing productivity and reducing labor costs, while also minimizing the environmental impact of timber harvesting.

“Besides its short-term effect on forestry, the technological advancements that come with autonomous forestry machines have the potential to address current environmental issues. As demonstrated in this study, by embracing cutting-edge technologies like autonomous navigation and manipulation algorithms, the unmanned machine provides not only timber harvesting with greater efficiency but also promotes sustainable forestry,” said corresponding author Pedro La Hera, PhD, of the Swedish University of Agricultural Sciences. “Automated operations can be highly accurate and effective in terms of collateral damage to adjacent ecosystems, which helps us to be more ecologically friendly than we currently are.”

URL upon publication: https://onlinelibrary.wiley.com/doi/10.1002/rob.22300

 

 

Additional Information
NOTE: 
The information contained in this release is protected by copyright. Please include journal attribution in all coverage. For more information or to obtain a PDF of any study, please contact: Sara Henning-Stout, newsroom@wiley.com.

About the Journal
The Journal of Field Robotics is an applied robotics journal publishing impactful research on the fundamentals of robotics in unstructured and dynamic environments. We welcome theoretical and practical papers on robotics used in real-world applications such as construction, forestry, agriculture, mining, environment, nuclear, subsea, intelligent highways, healthcare, search and rescue, military, and space (orbital and planetary). We also cover technical and scientific topics such as sensing, mechanical design, computing architectures, learning and control, human-robot interaction, and security.

About Wiley
Wiley is a knowledge company and a global leader in research, publishing, and knowledge solutions. Dedicated to the creation and application of knowledge, Wiley serves the world’s researchers, learners, innovators, and leaders, helping them achieve their goals and solve the world's most important challenges. For more than two centuries, Wiley has been delivering on its timeless mission to unlock human potential. Visit us at Wiley.com. Follow us on FacebookXLinkedIn and Instagram.

 

Organic compound found in trees could prevent contact lens eye infections


Researchers say hydroquinine could be an effective naturally occurring disinfecting solution for contact lenses, and help combat keratitis infections


Peer-Reviewed Publication

UNIVERSITY OF PORTSMOUTH





A new study suggests a naturally-occurring material is an effective disinfectant for contact lenses, worn by millions of people worldwide.

Microbial keratitis is one of the most serious potential complications for contact lens wearers. It’s an infection of the cornea that is caused by bacteria; the most common being Pseudomonas aeruginosa

Previous studies have found that existing disinfecting solutions are not effective for preventing biofilm, which are clusters of bacteria that attach to the surface of lenses.

Hydroquinine, an organic compound found in the bark of some trees, is known to have bacterial killing activity against Pseudomonas aeruginosa and several other clinically important germs, including Staphylococcus aureus, Escherichia coli, and Klebsiella pneumoniae.

The team behind the discovery, from the University of Portsmouth in England and Naresuan and Pibulsongkram Rajabhat universities in Thailand, has now explored the potential use of multipurpose formulas containing hydroquinine as a disinfectant for contact lenses.

They examined the antibacterial, anti-adhesion, and anti-biofilm properties of hydroquinine-formulated multi-purpose solutions (MPSs), and then compared it to two commercial MPSs; Opti-free Replenish and Q-eye. The natural compound killed 99.9 per cent of bacteria at the time of disinfection. 

The paper, published in Antibiotics, says these findings may aid in the development of novel disinfectants aimed at combating the P. aeruginosa bacteria. 

Dr Robert Baldock from the School of Pharmacy and Biomedical Sciences at the University of Portsmouth, said: “Commercially available disinfecting solutions, which are made up of a number of chemicals, can sometimes cause reactions with painful side-effects.

“We hoped to demonstrate that new agents made from natural products may be an excellent option to limit or reduce the risk of contact lens contamination. 

“It is exciting to see how this research has progressed; from discovery to exploring potential applications.”

There are up to 3.5 million reports of corneal infections annually, and in extreme cases it can result in permanent eye damage and vision loss. The risk of microbial keratitis doubles when someone wears contact lenses overnight and or longer than the recommended daily amount. 

Corneal blindness resulting from microbial keratitis is emerging as a prominent cause of visual disability, according to the World Health Organisation (WHO). The World Health Organisation (WHO) has also classified multidrug-resistant P. aeruginosa as one of the most concerning pathogens.

Drug-resistant bacteria occur in more than 2.8 million infections and are responsible for 35,000 deaths per year. Antimicrobial resistance happens when germs change over time and no longer respond to medicines, making it difficult to treat infections. 

Amoxicillin and Trimethoprim are commonly prescribed antibiotics that certain strains of P. aeruginosa have become resistant to. 

Hydroquinine is already known to be an effective agent against malaria in humans, and it is also being used in the Netherlands to treat nocturnal muscle cramps. Until now, there has been little investigation into its drug-resistant properties.

Lead author, Sattaporn Weawsiangsang from the Faculty Of Allied Health Sciences at Naresuan University, is currently a visiting researcher at the University of Portsmouth.

She said: “Our initial findings suggest that soaking contact lenses in a multi-purpose solution containing hydroquinine is possibly helpful to prevent contamination and infection.

“However, further investigation is needed to determine whether hydroquinine itself also has  adverse reactions or toxicity. 

“We are continuing to test the compound on a number of cells, and so far, the results are really promising. This potential development could contribute to the creation of new disinfectants from natural products, effectively combating P. aeruginosa infections and reducing cases of corneal infections.”

The paper concludes by recommending further research examining the effectiveness of hydroquinine with several different contact lens materials, and against other pathogenic microorganisms.