Tuesday, January 07, 2025

 

Sunken worlds under the Pacific?




ETH Zurich
Wave speed anomalies under the Western Pacific 

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A new computer model visualizes material in the lower mantle that cannot come from subducted plates.

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Credit: Sebastian Noe / ETH Zurich




No one can see inside the Earth. Nor can anyone drill deep enough to take rock samples from the mantle, the layer between Earth’s core and outermost, rigid layer the lithosphere, or measure temperature and pressure there. That's why geophysicists use indirect methods to see what's going on deep beneath our feet.

For example, they use seismograms, or earthquake recordings, to determine the speed at which earthquake waves propagate. They then use this information to calculate the internal structure of the Earth. This is very similar to how doctors use ultrasound to image organs, muscles or veins inside the body without opening it up.

Seismic waves provide information

Here's how it works: when the Earth trembles, seismic waves spread out from the epicentre in all directions. On their way through the Earth, they are refracted, diffracted or reflected. The speed at which the waves spread depends on the type of wave, but also on the density and elasticity of the material through which the waves pass. Seismographic stations record these different waves, and on the basis of these recordings, geophysicists can draw conclusions about the structure and composition of the Earth and examine the processes that take place inside it.

Using seismic recordings, Earth scientists determined the position of submerged tectonic plates throughout the Earth's mantle.  They always found them where they expected them to be: in an area known as subduction zones, where two plates meet and one subducts beneath the other into the Earth's interior. This has helped scientists investigate the plate tectonic cycle, i.e., the emergence and destruction of plates at Earth’s surface, through our planet’s history. 

Plate remnants where there shouldn't be any

Now, however, a team of geophysicists from ETH Zurich and the California Institute of Technology has made a surprising discovery: using a new high-resolution model, they have discovered further areas in the Earth's interior that look like the remains of submerged plates. Yet, these are not located where they were expected; instead, they are under large oceans or in the interior of continents – far away from plate boundaries. There is also no geological evidence of past subduction there. This study was recently published in the journal Scientific Reports.

What is new about their modelling approach is that the ETH researchers are not just using one type of earthquake wave to study the structure of the Earth's interior, but all of them. Experts call the procedure full-waveform inversion. This makes the model very computationally intensive, which is why the researchers used the Piz Daint supercomputer at the CSCS in Lugano. Is there a lost world beneath the Pacific Ocean?

“Apparently, such zones in the Earth's mantle are much more widespread than previously thought,” says Thomas Schouten, first author and doctoral student at the Geological Institute of ETH Zurich.

One of the newly discovered zones is under the western Pacific. However, according to current plate tectonic theories and knowledge, there should be no material from subducted plates there, because it is impossible that there were subduction zones nearby in the recent geological history. The researchers do not know for certain what material is involved instead, and what that would mean for Earth’s internal dynamics. “That's our dilemma. With the new high-resolution model, we can see such anomalies everywhere in the Earth's mantle. But we don't know exactly what they are or what material is creating the patterns we have uncovered.”

It's like a doctor who has been examining blood circulation with ultrasound for decades and finds arteries exactly where he expects them, says ETH professor Andreas Fichtner. “Then if you give him a new, better examination tool, he suddenly sees an artery in the buttock that doesn't really belong there. That's exactly how we feel about the new findings,” explains the wave physicist. He developed the model in his group and wrote the code.

Extracting more information from waves

So far, the researchers can only speculate. “We think that the anomalies in the lower mantle have a variety of origins,” says Schouten. He believes it is possible that they are not just cold plate material that has subducted in the last 200 million years, as previously assumed. “It could be either ancient, silica-rich material that has been there since the formation of the mantle about 4 billion years ago and has survived despite the convective movements in the mantle, or zones where iron-rich rocks accumulate as a consequence of these mantle movements over billions of years” he notes.

For the doctoral student, this means above all that more research with even better models is needed to see further details of Earth’s interior. “The waves we use for the model essentially only represent one property, namely the speed at which they travel through the Earth's interior,” says the Earth scientist. However, this does not do justice to the Earth's complex interior. “We have to calculate the different material parameters that could generate the observed speeds of the different wave types. Essentially, we have to dive deeper into the material properties behind the wave speed,” says Schouten.

 

Cutting edge simulations unveil clues to human evolution



University of Liverpool




The University of Liverpool has led an international team of scientists to take a fresh look at the running capabilities of Australopithecus afarensis, the early human ancestor famously represented by the fossil ‘Lucy’.

Karl Bates, Professor of Musculoskeletal Biology, convened experts from institutions across the UK and the Netherlands. Together they used cutting-edge computer simulations to uncover how this ancient species ran, using a digital model of ‘Lucy’s’ skeleton.

Previous work on the fossilized footprints of Australopithecus by multiple research teams has suggested that Lucy probably walked relatively upright and much more like a human than a chimpanzee. These new findings demonstrate that Lucy’s overall body shape limited running speed relative to modern humans and therefore support the hypothesis that the human body evolved to improve running performance, with top speed being a more critical driver than previously thought.

Professor Bates said: “When Lucy was discovered 50 years ago, it was by far the most complete skeleton of an early human ancestor. Lucy is a fascinating fossil because it captures what you might call an intermediate stage in Homo sapiens’ evolution. Lucy bridges the gap between our more tree-dwelling ancestors and modern humans, who walk and run efficiently on two legs.

“By simulating running performance in Australopithecus and modern humans with computer models, we’ve been able to address questions about the evolution of running in our ancestors.

“For decades scientists have debated whether more economical walking ability or improved running performance was the primary factor that drove the evolution of many of distinctly human characteristics, such as longer legs and shorter arms, stronger leg bones and our arched feet. By illustrating how Australopithecus walked and ran, we have started to answer these questions.”

The team used computer-based movement simulations to model the biomechanics and energetics of running in Australopithecus afarensis, alongside a model of a human. In both the Australopithecus and human models, the team ran multiple simulations where various features thought to be important to modern human running, like larger leg muscles and a long Achilles Tendon, were added and removed, thereby digitally replaying evolutionary events to see how they impact running speed and energy use.

Muscles and other soft tissues are not preserved in fossils, so palaeontologists don’t know how large ‘Lucy’s’ leg muscles and other important parameters were. However, these new digital models varied the muscle properties from chimpanzee-like to human-like, producing a range of estimates for running speed and economy.

The simulations reveal that while Lucy was capable of running upright on both legs, her maximum speeds were significantly slower than those of modern humans. In fact, even the fastest speed the team predicted for Lucy (in a model with very human-like muscles) remained relatively modest at just 11mph (18kph). This is much slower than elite human sprinters, which reach peak speeds of more than 20mph (38kph). The models show the range of intermediate (‘jogging’) speeds that animals use to run longer distances (‘endurance running’) was also very restricted, perhaps suggesting that Australopithecus didn’t engage in the kind of long-distance hunting activities thought to be important to the earliest humans.

Professor Bates continued: “Our results highlight the importance of muscle anatomy and body proportions in the development of running ability. Skeletal strength doesn’t seem to have been a limiting factor, but evolutionary changes to muscles and tendons played a major role in enhancing running speed and economy.

“As the 50th anniversary of Lucy’s discovery is celebrated, this study not only sheds new light on her capabilities but also underscores how far modern science has come in unravelling the story of human evolution.”

The study, ‘Running performance in Australopithecus afarensis’ was published in Current Biology (DOI:10.1016/j.cub.2024.11.025).

 

Desert nectar: Agave genome study sheds light on drought tolerance




Peer-Reviewed Publication

Nanjing Agricultural University The Academy of Science

Plant morphology, genome features, and synteny information. 

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Plant morphology, genome features, and synteny information.

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Credit: Horticulture Research




A recent study has illuminated the intricate genetic mechanisms behind crassulacean acid metabolism (CAM) photosynthesis in Agave hybrid NO.11648. This research is a landmark in understanding how plants adapt to extreme water scarcity, offering fresh insights into the genomic blueprint of CAM—a photosynthetic pathway critical for plant survival in arid climates. The findings could revolutionize agricultural practices in drought-prone regions, providing a scientific foundation for developing more resilient crops.

Crassulacean acid metabolism (CAM) photosynthesis, a unique metabolic strategy, enables plants to conserve water by capturing carbon dioxide during the night. This adaptation is a lifeline for species in arid environments, yet its genetic underpinnings remain enigmatic. Despite its ecological importance, gaps in understanding the molecular controls of CAM pose challenges to designing water-efficient crops for a warming world. Exploring the genomes of CAM plants, particularly the drought-resilient Agave genus, is essential to unlocking the genetic secrets of this extraordinary adaptation.

On December 19, 2023, researchers from the Zhanjiang Key Laboratory of Tropical Crop Genetic Improvement achieved a major milestone in CAM research. Published (DOI: 10.1093/hr/uhad269) in Horticulture Research, their study provides a chromosome-level genome assembly of Agave hybrid NO.11648, uncovering key genes and regulatory pathways that govern CAM photosynthesis.

The researchers employed cutting-edge techniques, including high-throughput chromosome conformation capture and next-generation sequencing, to achieve a highly detailed assembly of the Agave genome. The resulting genome spans 4.87 Gb, organized into 30 pseudo-chromosomes with an N50 of 186.42 Mb. This comprehensive analysis revealed a genome abundant in repetitive sequences, particularly I-type repeats, and identified 58,841 protein-coding genes. Among the findings was a lineage-specific whole-genome duplication event post-dating the divergence from the Asparagoideae subfamily. The study also highlighted a duplication within the phosphoenolpyruvate carboxylase kinase (PEPCK) gene family, identifying three PEPCK genes—PEPCK3PEPCK5, and PEPCK12—as central to CAM regulation. Furthermore, the researchers identified transcription factors linked to circadian rhythms, MAPK signaling, and hormone signal transduction pathways that modulate PEPCK3 expression, shedding light on the complexity of CAM's genetic control.

Dr. Wenzhao Zhou, the corresponding author and a renowned authority in tropical crop genetics, emphasized the significance of this discovery: "Our chromosome-level genome assembly of Agave hybrid NO.11648 represents a monumental step in plant science. By decoding the genetic architecture of CAM photosynthesis, we not only enhance our understanding of plant resilience but also provide invaluable genomic resources for breeding crops that thrive under challenging environmental conditions. This work lays a solid foundation for sustainable agriculture in the face of climate change."

The implications of this research extend far beyond Agave. Understanding CAM photosynthesis at a genomic level opens the door to developing drought-resistant crops capable of optimizing water use. These insights could transform agricultural practices, enabling crops to thrive in water-scarce regions and contributing to global food security. As the world grapples with climate change and diminishing water resources, this study serves as a beacon for innovation in plant genomics and sustainable farming.

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References

DOI

10.1093/hr/uhad269

Original Source URL

https://doi.org/10.1093/hr/uhad269

Funding information

This study was sponsored by the Earmarked fund for the China Agriculture Research System (grant No. CARS-19), the National Natural Science Foundation of China (grant No. 31801679), Guangdong Provincial Team of Technical System Innovation for Sugarcane Sisal Hemp Industry (grant No. 2023KJ104-03), Guangdong Basic and Applied Basic Research Foundation (grant Nos 2021A1515012421 and 2022A1515011841), Hainan Provincial Natural Science Foundation of China (321QN300 and 323MS099), and Central Public-interest Scientific Institution Basal Research Fund for Chinese Academy of Tropical Agricultural Sciences (grant Nos. 1630062019016, 1630062020015, 1630062022002, and 1630062021015).

About Horticulture Research

Horticulture Research is an open access journal of Nanjing Agricultural University and ranked number one in the Horticulture category of the Journal Citation Reports ™ from Clarivate, 2022. The journal is committed to publishing original research articles, reviews, perspectives, comments, correspondence articles and letters to the editor related to all major horticultural plants and disciplines, including biotechnology, breeding, cellular and molecular biology, evolution, genetics, inter-species interactions, physiology, and the origination and domestication of crops.

Reducing irrigation for livestock feed crops is needed to save Great Salt Lake, study argues


 News Release 

Oregon State University

Great Salt Lake 2024 

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Great Salt Lake 2024

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Credit: Photo by Brian Richter, president, Sustainable Waters




CORVALLIS, Ore. – The Great Salt Lake has lost more than 15 billion cubic yards of water over the past three decades, is getting shallower at the rate of 4 inches a year, and an analysis of its water budget suggests reducing irrigation is necessary for saving it.

The study published today in Environmental Challenges shows that 62% of the river water bound for the lake is diverted for human uses, with agricultural activities responsible for nearly three-quarters of that percentage.

“The research highlights the alarming role of water consumption for feeding livestock in driving the lake’s rapid depletion,” said co-author William Ripple, distinguished professor of ecology at Oregon State University, who notes that 80% of agricultural water use is for irrigating alfalfa and hay crops.

To stabilize the lake and begin refilling it, the authors propose cutting human water consumption in the Great Salt Lake watershed by 35%, including a reduction in irrigated alfalfa production, a fallowing of much of the region’s irrigated grass hay fields and taxpayer-funded compensation for farmers and ranchers who lose income.

“The lake is of tremendous ecological, economic, cultural and spiritual significance in the region and beyond,” said Ripple, a member of OSU’s College of Forestry. “All of those values are in severe jeopardy because of the lake’s dramatic depletion over the last few decades.”

The authors used data from the Utah Division of Water Resources to build a detailed water budget for the Great Salt Lake basin for the years 1989 through 2022. On average, inputs to the lake – river inflows and precipitation – during the study period lagged behind consumption and evaporation at the rate of 500 million cubic yards per year.

The water budget has been in a deficit situation for much of the past 100 years and the numbers have worsened with climate change and drought, the authors say.

“Abnormally large snowmelt inflow during the 1980s and 1990s served to temporarily obscure the long-term decline in lake levels, and the lake actually reached its highest level in more than a century in 1987,” Ripple said. “But it has been dropping by roughly 4 inches per year on average since then.”

The Great Salt Lake, which has no outlet, is the largest saline lake in the Western Hemisphere and the eighth largest in the world. Its 21,000-square-mile drainage basin includes the Wasatch Mountains, whose snowfall accounts for much of the basin’s water replenishment.

A biodiversity hotspot, the lake sustains more than 10 million migratory birds and 350 bird species. Declining lake levels threaten critical habitats and could disrupt food webs, Ripple said.

The lake directly supports 9,000 jobs and annually fuels $2.5 billion in economic activity in the form of recreation, mining and brine shrimp harvesting, the paper points out. It’s the world’s largest supplier of brine shrimp eggs, a food source that underpins global aquaculture, but as the lake shrinks and salinity increases, the shrimp become physiologically stressed and don’t produce as well.

Also as the lake gets smaller, human health risk grows in the form of wind-carried dust from the exposed saline lakebed, or playa. Five percent of the Great Salt Lake playa is fine particulate matter that can enter the lungs and cause a range of pulmonary problems, and particularly troublesome, the scientists say, is the presence of toxic heavy metals, residues of the region’s history of mining, smelting and oil refining.

Depending on which conservation measures are deployed – including crop shifting, reducing municipal and industrial use, and leasing water rights from irrigators – the authors propose that farmers and ranchers who lose income from using less water could be compensated at a cost ranging from $29 to $124 per Utah resident per year. The state’s population is 3.4 million.

“Revenues from growing both irrigated alfalfa and grass hay cattle feed in the Great Salt Lake basin account for less than 0.1% of Utah’s gross domestic product,” Ripple said. “But our potential solutions would mean lifestyle changes for as many as 20,000 farmers and ranchers in the basin.”

In that regard, he adds, the Great Salt Lake area exemplifies the socio-cultural changes facing many river basin communities in the West and around the world, where climate change is sending many water budgets into deficit status.

“The economic and cultural adjustments required are significant but not insurmountable,” said Ripple. “With the right policies and public support, we can secure a sustainable future for the Great Salt Lake and set a precedent for addressing water scarcity globally.”

Collaborating with Ripple on the paper was an interdisciplinary team of scientists from Northern Arizona University, Utah State University and Virginia Tech; the Utah Agricultural Experiment Station; and Sustainable Waters, a New Mexico-based nonprofit focusing on global water education.

The National Science Foundation and the Utah Agricultural Experiment Station provided funding.

Great Salt Lake.2024

Credit

Photo by Brian Richter, president, Sustainable Waters