Monday, January 27, 2025

 

Space and time? Here’s how they interact in our brain



A study conducted by cognitive neuroscientists at SISSA explored the relationship between the processing of space and time in the human brain, revealing that these two types of information are only partially linked in our brain


Scuola Internazionale Superiore di Studi Avanzati




Imagine a swarm of fireflies, flickering lights on and off in the nighttime space. How does the human brain process and integrate information about duration and spatial position enabling this vision? This was the question addressed by Valeria Centanino, Gianfranco Fortunato, and Domenica Bueti from SISSA’s Cognitive Neuroscience group in their research published in Nature Communications. The study highlights the existence of a functional hierarchy in the human cerebral cortex, where posterior areas—those that first receive visual information— process space and time together. In contrast, in parietal areas and even more so in frontal areas, engaged later in information processing, space and time gradually separate. Moreover, the way time is encoded differs across these brain regions. In the occipital areas, where space and time are processed together, time is encoded in the activity of the same neural population, which becomes proportionally more active the longer the duration. In parietal and frontal areas, instead, where the link between space and time becomes progressively weaker and eventually disappears, time is encoded by distinct neural populations, each of them responding selectively to specific durations. In the parietal areas, in an intermediate position of this hierarchy, there is a coexistence of duration coding mechanisms and time and space are either processed toghether or independently.

The Experiment: Visual Stimuli in Different Screen Positions

“How does the human brain process visual information changing in both spatial position and duration?” This was the question driving the research. “We wanted to understand whether space and time are processed independently or not,” the authors of the study explain. To simulate what might occur in reality, they asked young healthy participants to judge the duration of a visual stimulus presented at different positions on a screen for varying amounts of time. During this task, neural responses were recorded using high-resolution spatial magnetic resonance imaging (fMRI).

Different Brain Areas, Different Coding Strategies. Posterior Cortex: Space and Time Processed Together

“What we discovered is that the link between space and time in the human brain is not fixed but depends on the brain areas involved. In the posterior part of our brain, particularly in the occipital visual cortex, the connection is strong because space and time are processed by the same neurons. This region, specialized in receiving visual inputs,” explain Centanino, Fortunato, and Bueti, “responded to both the position and duration of the stimulus: the longer the viewing time, the greater the brain activity in these neuron populations.”

Anterior Cortex: Separate Neurons for Space and Time

In the anterior regions, however, this connection disappears. In the frontal premotor areas, involved in movement preparation, time is processed independently of the position of the visual stimulus. Distinct populations of neurons process space and time. Furthermore, the authors add, “duration is encoded differently compared to the posterior areas. Here, distinct neural populations preferentially respond to specific durations, and neural populations that prefer similar durations are contigous in the cortical surface, forming what we might call ‘time maps.’”

Intermediate Cortex: A Variety of Mechanisms

In an intermediate region of this cortical hierachy, specifically the parietal cortex, which is known for integrating various information sources and is functionally situated between the occipital and frontal premotor cortex, the relationship between space and time is multifaceted. The three researchers explain: “Some neuronal populations responded to both the position and the duration of the stimulus, while others responded only to one of these dimensions. The response to time was, in some cases, monotonic like in the occipital cortex, while in others it showed selectivity for specific durations, similar to the anterior areas.”

A Functional Hierarchy in Time Processing

“This study,” conclude Centanino, Fortunato, and Bueti, “advances our understanding of how space and time, two fundamental aspects of our experience of the world, are processed and integrated in the human brain. Moreover, it sheds light on the presence of a functional hierarchy in time processing. The existence of multiple response profiles to stimulus duration, along with their specific relationship to spatial processing, suggests that different brain areas contribute distinctly to the processing and perception of time.”

SPAGYRIC HERBALISM

Aromatic plant can fight colorectal cancer, say scientists




University of Sharjah

Incubation 

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Inhibitory effect escalating concentration of A. herba-alba extract on cell viability of various colon cancer cell lines after (A) 24 h and (B) 48 h of incubation.

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Credit: Food Science & Nutrition (2024): https://doi.org/10.1002/fsn3.4715





Scientists from the University of Sharjah have found that a naturally growing aromatic plant contains ingredients with the ability to treat colorectal cancer.

The plant is a common herb. It is scientifically known as Artemisia herba-alba. It grows naturally in North Africa and the Middle East where the inhabitants have traditionally been using it as  medicine to treat bronchitis, diarrheas, hypertension and diabetes.

Artemisia herba-alba is popularly known by different appellations like common wormwood, white wormwood, or simply herba alba.

The news that it can be an effective weapon to fight colorectal cancer is reported in a study published in the peer-reviewed journal Food Science and Nutrition.

“These results suggest that Artemisia herba-alba has great potential as a new tool in fighting CRC (colorectal cancer),” says Dr. Lara Bou Malhab. “Artemisia herba-alba could be a promising natural ingredient for new cancer treatments based on (our study’s) findings.”

Dr. Bou Malhab, the study’s lead author, is a research associate at Sharjah University’s Research Institute for Medical and Health Sciences. The plant material for the study included aerial parts of Artemisia herba-alba that were collected from southern Jordan in May 2021.

“[Co-author) Prof. M. Hudaib, an esteemed expert in Pharmacognosy and Phytochemistry at the University of Jordan's School of Pharmacy, conducted the botanical identification of these specimens,” the authors write. “After collection, the aerial parts were air-dried at room temperature, and protected from direct sunlight to avoid deterioration of sensitive components.”

Once dried, the plant material was mechanically ground into fine powder “with particles no larger than 0.5 mm. This preliminary step was done to enhance the effectiveness of the next extraction process, guaranteeing the highest possible amount of the extracted phytochemicals.”

The study finds that the extract contained many active compounds with properties capable of fighting colorectal cancer with various degrees of effectiveness. The findings show that the extract from Artemisia herba-alba stopped the growth of cancerous cells and caused them to die, regardless of specific genetic traits.

“It also disrupted the cell cycle and reduced the activity of proteins like Cyclin B1 and CDK1, which are crucial for cancer cell division. Additionally, it blocked the PI3K/AKT/mTOR pathway, which plays a major role in cancer development,” adds Dr. Bou Malhab.

“The current study underscores the extract's selective cytotoxicity against CRC cell lines, highlighting its potential to serve as a complementary treatment to existing cancer treatment with more efficacious and less harmful alternatives.

“Our findings highlight the immense potential of Artemisia herba-alba as a natural source for developing innovative therapies against colorectal cancer, addressing the urgent need for treatments with fewer side effects and greater efficacy.”

Colorectal cancer or CRC is the third most common cancer worldwide. It accounts for nearly 10% of all cancer cases. It is the second leading cause of cancer-related deaths. In 2020, it caused 1 million deaths with two million new cases reported in the same year. According to World Health Organization, CRC predominantly affects old individuals with most cases occurring in people aged 50 and above.

"Colorectal cancer (CRC) is a common and serious illness, making it essential to find new and better treatments,” emphasizes Dr. Bou Malhab.

The study could assume considerable significance if noted and adopted by big pharma as current traditional chemotherapy, used to treat colorectal cancer, faces challenges with cancerous cells becoming resistant to the drugs besides their harmful side effect.

“Which is why alternative solutions are needed. One plant, Artemisia herba-alba, known for its medicinal applications, was studied for its ability to fight CRC,” maintains Dr. Bou Malhab.” Researchers tested a methanol-based extract of this plant on eight different types of CRC cells, aiming to see how it affected cell survival, growth, and death, as well as its impact on a key cancer-related pathway.”

The study’s findings emphasize Artemisia herba-alba’s “potential as an anticancer agent for CRC. [They] demonstrate its cytotoxic effects, ability to induce apoptosis, ability to arrest the cell cycle …, suggesting a wider therapeutic significance.”

As they conclude their study by recounting their findings, the scientists urge further research “to elucidate the molecular mechanisms and clinical efficacy of Artemisia herba-alba in the context of cancer treatment.”

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Subject of Research

Article Title

PLANT PATHOLOGY

New insights into the immune response of plants



Research team identifies calcium-activated “bi-kinase module” as central molecular switch




University of Münster




Plant pests such as bacteria and fungi lead to significant yield losses in agriculture. In order to develop new strategies against such pathogens, understanding the plant’s immune response is of central importance. A team headed by biologist Prof Jörg Kudla of the University of Münster (Germany) has identified important components and mechanisms of the molecular machinery that transmits information about a pathogen encounter within the plant organism. The study, which has now been published in the journal Science Advances, also provides clues as to how plants manage to transmit immune signals from cell to cell without disrupting other signalling chains in the affected cells.

When plants are infected by pathogens, they mount a two-phase immune response, which first develops directly at the infection site and then spreads throughout the entire organism. This prepares the previously unchallenged parts of the plant for a possible attack. Calcium signals play an essential role in this process. When plant tissue is damaged by a pathogen, it triggers calcium signals which are then passed on from cell to cell. In addition, the cells use an NADPH oxidase (an enzyme in the cell membrane) to release reactive oxygen species as further signalling molecules, which then interact with the calcium signals to enable the systemic propagation of the immune response. Until now, researchers did not fully understand this interplay between calcium and reactive oxygen species and the regulation of NADPH oxidase by calcium-dependent phosphorylation.

Jörg Kudla’s team showed for the first time that two different kinases, both of which are activated by calcium, have to work together in order to facilitate efficient systemic immune signal proliferation. This “bi-kinase module” sensitises the NADPH oxidase to calcium and enables synergistic activation of this enzyme, which then produces more reactive oxygen species. One of the two calcium-dependent kinases was already known, while the second was identified by the team as part of the recently published study. “Such a calcium-activated bi-kinase module has never been described before,” explains Jörg Kudla.

Based on their observations, the biologists proposed a model detailing the mechanisms of systemic immune signalling in plants: Triggered by a pathogen, initially a third kinase inside the infected cell triggers the generation of extracellular reactive oxygen species in the cell, which would then diffuse to the surface of neighbouring cells. Up to this point, the process was understood. The team has now discovered that these reactive oxygen species not only trigger new calcium signals in the neighbouring cells, but also activate the calcium-dependent bi-kinase module, which in turn activates the release of reactive oxygen species.

This causes a renewed influx of calcium into the neighbouring cells. In this way, the signal spreads without the affected cells themselves coming into contact with the pathogen. “Surprisingly, we observed that the intensity of the moving calcium signal is relatively weak and yet sufficient to activate the NADPH oxidase via the bi-kinase module. This is likely caused by sensitisation of this enzyme. We have elucidated the molecular mechanisms of this sensitisation,” says Jörg Kudla. “We also suspect that this enables this weak calcium signal to spread from cell to cell without disrupting other signalling calcium-dependent processes that are occurring simultaneously in these cells.” How exactly the cells regulate the strength of the calcium signal is not yet known.

For their investigation, the team combined various molecular genetic, cell biological and biochemical methods. The investigation of the propagation of calcium signals in tissues was carried out in transgenic plants of thale cress (Arabidopsis thaliana), in which the researchers analysed biosensor proteins for calcium using high-resolution microscopy. For further investigations, human cell cultures were used in which the plant signalling pathway was reconstituted.

Alongside the Kudla research group, Prof Iris Finkemeier’s group from the University of Münster was also involved in the project. The other authors are members of the research group headed by Prof Tina Romeis (formerly at the Free University of Berlin and now at the Leibniz Institute of Plant Biochemistry in Halle).


Unlocking the secrets of tomato's defense mechanisms against insects



Nanjing Agricultural University The Academy of Science
Downregulation of Sl4CLL6 gene expression reduced resistance to mites in tomato plants. Silencing of Sl4CLL6 by TRV-VIGS. 

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Downregulation of Sl4CLL6 gene expression reduced resistance to mites in tomato plants. Silencing of Sl4CLL6 by TRV-VIGS. A Negative (CK), TRV2-PDS, and TRV2-Sl4CLL6 plants. B Expression of Sl4CLL6 gene in CK and TRV2-4CLL6 plants. C Changes in phenotypes of CK and silenced plants after inoculation with mites for 1, 4, and 7 days. D Average number of mites in CK and silenced plants after inoculation with mites for 0, 1, 4, and 7 days. EH Changes in the expression of Sl4CLL6 and downstream genes of the phenylpropanoid biosynthesis pathway, SlHCTSlCAD, and SlCHI, in CK and silenced plants 0, 1, 4, and 7 days after inoculation with mites. I Potential mechanisms by which Sl4CLL6 regulates lignin accumulation and shapes resistance to mites in tomato. Each value indicates the mean ± standard deviation of three biological replicates. ****** and **** indicate significant differences between CK and silenced plants with P < 0.01, P < 0.001, P < 0001, P < 00001, respectively, as determined by t-test.

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Credit: Horticulture Research




In a study that could transform agricultural pest management, researchers have uncovered the robust insect resistance mechanisms of Solanum habrochaites, a wild tomato species. By unraveling the genetic and metabolic intricacies of the phenylpropanoid biosynthesis pathway, the study opens new avenues for breeding cultivated tomatoes with enhanced pest resistance. The findings hold the potential to reduce dependency on chemical pesticides, addressing mounting concerns over pesticide resistance and environmental harm.

Tomatoes, a staple crop worldwide, face significant challenges from pests such as aphids and mites, which wreak havoc on yields and quality. Overreliance on chemical pesticides has exacerbated the problem, with pests evolving resistance and the environmental toll of pesticides raising alarm bells. To meet these challenges, scientists are turning to wild tomato species like Solanum habrochaites, which naturally possess robust defense mechanisms. Deciphering these mechanisms is crucial for sustainable agriculture and ensuring food security amid growing pest pressures.

A team from Northeast Agricultural University in China has made a landmark contribution to this endeavor, publishing their findings (DOI: 10.1093/hr/uhad277) in Horticulture Research on January 9, 2024. The study employed cutting-edge metabolomics and transcriptomics techniques to dissect the phenylpropanoid biosynthesis pathway in Solanum habrochaites, identifying its critical role in insect resistance.

The researchers found that Solanum habrochaites produces significantly higher levels of phenylpropanoids and flavonoids, compounds pivotal in deterring phytophagous insects. Comparing the wild species to the cultivated tomato variety ‘Ailsa Craig,’ the study revealed that Solanum habrochaites boasts uniquely structured glandular trichomes capable of storing more anti-insect metabolites. Key genes such as Sl4CLL6 were identified as central players in this defense strategy; silencing these genes resulted in diminished resistance to mites, confirming their critical role. These insights not only deepen our understanding of plant-insect dynamics but also lay the groundwork for breeding pest-resistant crops using wild tomato genetics.

Dr. Aoxue Wang, one of the study’s corresponding authors, emphasized the broader significance of this work: “Our findings offer a significant step forward in understanding the natural defense mechanisms of tomatoes. By harnessing the genetic resources of wild tomato species, we can potentially develop more resilient and sustainable agricultural practices.”

The potential applications of this research extend beyond tomatoes. By leveraging the genetic wealth of wild plants, scientists can pioneer innovative solutions for pest management across diverse crops. This approach promises to benefit farmers by reducing crop losses while fostering environmentally friendly farming practices. The study also invites further exploration of other wild species that may harbor similar genetic treasures, ensuring that agriculture can meet the challenges of a changing world sustainably.

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References

DOI

10.1093/hr/uhad277

Original Source URL

https://doi.org/10.1093/hr/uhad277

Funding information

This work was supported by the National Natural Science Foundation of China (grants U22A20495 and 32072588) and the National Natural Science Foundation of Heilongjiang Province (LH2021C032).

About Horticulture Research

Horticulture Research is an open access journal of Nanjing Agricultural University and ranked number one in the Horticulture category of the Journal Citation Reports ™ from Clarivate, 2022. The journal is committed to publishing original research articles, reviews, perspectives, comments, correspondence articles and letters to the editor related to all major horticultural plants and disciplines, including biotechnology, breeding, cellular and molecular biology, evolution, genetics, inter-species interactions, physiology, and the origination and domestication of crops.

Cracking the code: what makes butterhead lettuce so unique




Nanjing Agricultural University The Academy of Science
Genetic mapping of the gene controlling butterhead and compact plant architecture. 

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Genetic mapping of the gene controlling butterhead and compact plant architecture. A Upper panel, the two parents, a stem lettuce (Ws1168, left) and a butterhead lettuce (W6-29885, right). Lower panel, the two phenotypes of individuals from an F3 family derived from the Ws1168 × W6-29885 cross. Scale bar = 10 cm. B BSR analysis of butterhead plant architecture in the segregating F3 family in A. The x-axis represents the nine chromosomes of lettuce. The y-axis represents the Δ(SNP index) between two extreme pools. A single locus on chromosome 1 controls plant architecture in the segregating population. C Upper panel, the two parents, a stem lettuce (Y37, left) and a loose-leaf lettuce (S1, right). Lower panel, the two phenotypes in an F4 family derived from the cross Y37 × S1. Scale bar = 10 cm. D BSR assay of compact plant architecture in the F4 family in CE Fine mapping of the gene controlling compact plant architecture. Numbers between two neighboring markers refer to the number of recombinants among 4392 individuals in the F4 family. F Gene structure of LG1149597 (LsKIPK), and its sequences in the four parents used in two crosses. The arrow shows the nonsense mutation, converting the codon CGA to TGA.

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Credit: Horticulture Research




A recent discovery has unlocked the genetic secrets behind butterhead lettuce’s signature compact structure, a development that could revolutionize crop breeding and agricultural sustainability. Scientists have identified two critical genes, LsKIPK and LsATPase, whose mutations are responsible for the plant’s distinctive architecture. This breakthrough not only deepens our understanding of plant morphology but also offers a path to developing lettuce varieties with improved traits, such as stress resilience and adaptability, potentially transforming farming practices globally.

Butterhead lettuce, prized for its soft leaves and unique, tightly packed structure, is a staple leafy vegetable, especially in Europe. Its compact architecture makes it ideal for mechanized harvesting and efficient storage. However, the genetic factors underpinning this advantageous trait have long eluded researchers. Understanding these factors is crucial for addressing agricultural challenges such as increasing crop yields, improving resistance to environmental stresses, and adapting to modern farming systems. With the growing demand for sustainable agriculture, researchers turned their focus to uncovering the genetic blueprint behind this lettuce’s structure.

Published (DOI: 10.1093/hr/uhad280) in Horticulture Research on December 28, 2023, a study by scientists at Huazhong Agricultural University has identified the genetic drivers behind butterhead lettuce's morphology. Led by Dr. Xin Wang, the team employed cutting-edge genetic mapping and CRISPR/Cas9 technology to pinpoint the roles of LsKIPK and LsATPase. These genes were found to play pivotal roles in regulating cell wall development, resulting in the compact structure unique to butterhead lettuce.

The study revealed that mutations in LsKIPK and LsATPase, specifically the Lskipk and Lsatpase variants, significantly reduced leaf size and angle, key contributors to the plant’s tight form. Researchers demonstrated that the double mutation of these genes is both necessary and sufficient to produce the characteristic butterhead lettuce architecture. The findings mark a departure from the genetic mechanisms observed in other lettuce varieties like crisphead. Using knockout experiments and complementation tests, the team confirmed that manipulating these genes could enable precise control over plant structure, offering exciting possibilities for targeted breeding.

“This study not only unravels the genetic mysteries behind butterhead lettuce’s architecture but also opens up new possibilities for crop improvement,” said Dr. Xin Wang, the study’s lead author. “By understanding and leveraging these genetic pathways, we can potentially develop lettuce varieties that are more efficient to cultivate and harvest, ultimately benefiting both farmers and consumers.”

The implications of this discovery extend far beyond butterhead lettuce. By manipulating the LsKIPK and LsATPase genes, plant breeders could develop crops with compact and resilient architectures suited to mechanized farming, increasing yields while reducing costs. Such innovations could enhance resistance to drought, disease, and other environmental stresses, creating a blueprint for more sustainable agriculture. These advancements promise to meet the growing demands of global food security, transforming how crops are grown, harvested, and stored in the future.

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References

DOI

10.1093/hr/uhad280

Original Source URL

https://doi.org/10.1093/hr/uhad280

Funding information

This work was supported by the National Natural Science Foundation of China award no. 31830079 and the scientific research start-up funding (11020102) from Hubei Hongshan Laboratory.

About Horticulture Research

Horticulture Research is an open access journal of Nanjing Agricultural University and ranked number one in the Horticulture category of the Journal Citation Reports ™ from Clarivate, 2022. The journal is committed to publishing original research articles, reviews, perspectives, comments, correspondence articles and letters to the editor related to all major horticultural plants and disciplines, including biotechnology, breeding, cellular and molecular biology, evolution, genetics, inter-species interactions, physiology, and the origination and domestication of crops.