Monday, May 11, 2026

PHYTOLOGY

Research shows soil temperature modulated millet agriculture in Neolithic East Asia




Chinese Academy of Sciences Headquarters

A cartoon showing a thriving millet-based agricultural society in East Asia under conditions of rising soil temperatures 

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A cartoon showing a thriving millet-based agricultural society in East Asia under conditions of rising soil temperatures

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Credit: DONG Guanghui





Millet has been an important crop in East Asia for much of the Holocene, a period beginning about 11,700 years ago. To better understand how environmental conditions may have shaped the development of millet agriculture, researchers from the Institute of Earth Environment of the Chinese Academy of Sciences, and their collaborators in and aboard China investigated loess deposits from the Chinese Loess Plateau (CLP).

The study, which was published in PNAS on May 4, suggests that fluctuations in growing-season soil temperature played an important role in modulating the development and geographic spread of millet agriculture in East Asia. The researchers found that mid-Holocene soil cooling from about 7,500 to 6,000 years ago likely reduced thermally suitable zones for millet cultivation, contributing to a southward displacement of farming and a delayed large-scale agricultural expansion until subsequent soil temperature recovery after around 6,000 years ago.

To conduct the research, the scientists analyzed loess deposits from the Longgugou (LGG) section of the CLP. They combined 14 radiocarbon and 18 optically stimulated luminescence dates to develop a high‑resolution chronology spanning approximately 12,300 to 2,800 years ago. Based on this chronology, they performed biomarker analyses on 114 samples to reconstruct growing-season soil temperature and vegetation conditions. By integrating these proxy reconstructions with archaeological datasets and transient climate simulations, the researchers explored how Holocene soil temperature variations may have influenced the spatiotemporal evolution of millet agriculture in Neolithic East Asia.

The results indicate that between approximately 12,300 and 7,500 years ago, soil temperatures were relatively high, accompanied by comparatively low moisture and sparse vegetation. From 7,500 to 6,000 years ago, soil temperatures progressively declined under wetter conditions with denser vegetation. After 6,000 years ago, soil temperatures rapidly recovered and then remained relatively stable for millennia, while moisture and vegetation cover decreased.

By comparing these climate and vegetation reconstructions with archeological evidence for millet agriculture, the researchers suggest that, between 8,000 and 7,500 years ago, relatively warmer soils may have supported early millet cultivation Yanshan-Liaoning region, where communities may have faced greater subsistence pressure. In the CLP and lower-latitude regions, millet use appears to have remained limited and likely co-existed with hunting, gathering, and other subsistence practices.

In contrast, from 7,500 to 6,000 years ago, cooler soils, wetter conditions, and denser vegetation may have narrowed reliable cultivation space, particularly near the lower thermal thresholds for frost-sensitive millets. These conditions likely contributed to a southward shift of millet farming toward the CLP and surrounding regions. From 6,000 to 4,000 years ago, recovering and more stable soil temperatures, along with reduced vegetation cover, and advances in cultivation practices, might have facilitated millet expansion and broader late Neolithic development.

This study provides a high-resolution Holocene growing-season soil temperature record from a core region of early millet agriculture in East Asia and highlights soil temperature as an underappreciated climatic constraint on millet agricultural development. The findings suggest that large-amplitude soil temperature fluctuations helped modulate the geographic distribution and developmental trajectory of early millet farming, offering refined insights into climate-society interactions during the Neolithic period in East Asia.

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How soil bacteria help plants defend themselves against disease



Researchers at the University of Liège have uncovered a new mechanism by which soil bacteria activate plants’ immune defenses




University of Liège

Mechanism of plant immune activation by bacteria of the Bacillus genus 

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This soil bacterium is recognised by the plant, which, following the release of a signal that spreads throughout all its organs, strengthens its defences against attack by pathogens. Bacillus produces a molecule called surfactin, capable of interacting with root cells (bottom right). More specifically, surfactin binds preferentially to certain lipids in the plant cell membrane (glucosylceramides). This interaction alters the physical properties of the membrane, leading to the opening of mechanosensitive ion channels (top right) and triggering the immune response.

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Credit: Created in BioRender. Deleu, M. (2026) https://BioRender.com/qddoip5




A study led by researchers at the University of Liège reveals the mechanism by which surfactin, a molecule produced by beneficial soil bacteria, activates plants’ immune defences. This mechanism, distinct from the classical paradigm of immune recognition, relies on direct interaction with the plant cell membrane. This discovery opens up prospects for the development of next-generation biopesticides.

Plants are not defenceless against pathogens. Certain soil bacteria, far from being mere inhabitants of the roots, send chemical signals to plants that prepare them to resist pathogens. An international research consortium, led by researchers from Gembloux Agro-Bio Tech, has just elucidated the molecular mechanism behind this immunisation. This study shows that surfactin, a cyclic lipopeptide produced by bacteria of the genus Bacillus, acts not via a protein receptor, but by interacting directly with the lipids in the plant cell membrane. "Plants have sophisticated defence mechanisms against disease," explains Marc Ongena, researcher at the TERRA Research CentreAmong these, immunity induced by beneficial soil microorganisms is attracting growing interest, both in fundamental and applied research. We already knew that certain rhizosphere bacteria, particularly those of the genus Bacillus, produce cyclic lipopeptides capable of stimulating plant defences. But how these molecules were recognised by plant cells remained poorly understood until now."

The researchers focused on surfactin - one of these lipopeptides - and its interaction with Arabidopsis thaliana, a model plant commonly used in plant biology. Using a transdisciplinary approach combining cell biology, biochemistry and biophysics, they demonstrated that surfactin binds to sphingolipids - and more specifically to glucosylceramide - present in the root cell membrane. “This interaction causes a slight remodelling of the membrane, increasing its tension, which activates mechanosensitive ion channels,” explains Magali Deleu. This triggers a signalling cascade that spreads from the roots to the leaves and prepares the plant to better resist pathogens, including the fungus Botrytis cinerea, which causes grey mould.

This mechanism differs from the classical paradigm of plant innate immunity, in which the recognition of foreign molecules usually involves membrane protein receptors. Here, it is the physical modification of the membrane itself – rather than a lock-and-key interaction with a receptor protein – that acts as the triggering signal. This finding sheds new light on how plants can perceive their microbial environment and distinguish between beneficial bacteria and true pathogens.

In practical terms, this research forms part of efforts to develop a new generation of biopesticides. By understanding precisely how these bacteria or their molecules activate plant immunity, it becomes possible to envisage more targeted and effective crop protection strategies, partially replacing chemical inputs. These results thus provide a solid scientific basis for guiding the rational development of bio-based products for use in sustainable agriculture.

This study illustrates the value of interdisciplinary basic research in shedding light on concrete agronomic challenges. By deciphering the chemical dialogue between soil bacteria and host plants at the molecular level, the teams at the University of Liège and their partners are opening up new avenues for better exploiting the natural alliances that exist between microorganisms and plants, to the benefit of an agriculture less dependent on synthetic products.

Old plant populations offer new clues to climate resilience


University of Virginia College and Graduate School of Arts & Sciences




When scientists think about how plants will respond to climate change, they often look north. As temperatures rise, many species are expected to shift their ranges toward cooler regions with a loss of populations in warmer habitats. But new research from the University of Virginia, published in the journal Evolution Letters, suggests the story may be more complicated and more hopeful.

The University of Virginia’s Commonwealth Professor of Biology Laura Galloway and postdoctoral research associate Antoine Perrier are studying what they call “rear-edge” populations, those found at the warmest edges of their geographic ranges. These populations, often descended from groups that survived the last ice age, have endured thousands of years of climate change.

“Because these populations have been there since the last glaciation, they’ve gone through warming in the past,” Galloway said. “We can use them as models for what we might expect in response to future warming.”

Their recent work on a native wildflower brings together multiple lines of evidence, including genomics, greenhouse experiments and field studies, to test how these populations evolved and what that might mean for the future.

Rethinking Vulnerability at the Warm Edge

Conventional ecological models predict that populations at the warm edge of a species’ range will be the first to disappear as temperatures rise. But Perrier and Galloway found something different.

“We often think that populations at the warmer edge are the ones that will go extinct,” Perrier said. “But it turns out there’s a lot that we don’t know about these populations.”

One possibility is that they harbor high genetic diversity, a legacy of their age and persistence since the last ice age, and therefore may be a resource for adapting to future change. Another is that as small, isolated populations, they might show signs of genetic drift, a process that reduces diversity and can make populations more fragile. A third possibility is that these populations have undergone local adaptation, evolving traits that allow them to thrive in conditions warmer than typical for the species.

The answer, in this case, was clear.

“We found patterns of local adaptation throughout the range,” Perrier said. “But what was very interesting is that in the deep south only the populations coming from very similar environments were able to actually grow and reproduce.”

In other words, southern populations have evolved specific traits that allow them to survive and reproduce in warmer climates. Northern populations transplanted into those same conditions failed to flower at all.

A Surprising Forecast for Climate Change

The findings challenge a central assumption about how species will respond to warming. Instead of southern populations disappearing first, the researchers’ data suggest that they are likely to persist, while populations in the middle of the range may struggle.

Many plant species use cold to cue reproduction, “As winters get warmer, populations are expected to experience a loss in reproduction,” Perrier said. “But this was not the case for the rear edge.”

Southern populations may be less affected by continued warming because they have already evolved to reproduce without relying on cold winter cues. By contrast, populations in regions like the mid-Atlantic could face new challenges.

“It’s almost the opposite of what we expect,” Galloway said, noting that both far-northern and far-southern populations may prove more resilient than those in between.

The work also points to practical applications. Traits that allow southern populations to thrive in warmer climates could potentially be introduced into more vulnerable populations through conservation strategies such as assisted gene flow.

Natural Laboratories for the Future

Beyond its immediate findings, the research highlights the value of studying long-term evolutionary history. Rear-edge populations, the researchers argue, act as “natural laboratories” for understanding how species respond to environmental change.

For Perrier, the work underscores both the urgency and the opportunity of climate research.

“We don’t often think of these populations as being the ones that might be the best adapted to future conditions,” he said. “But they could actually persist and change how we think about species responses to climate change.”

Plants survived the dinosaur-killing asteroid by duplicating genomes




Cell Press





When an asteroid as big as Mount Everest struck Earth 66 million years ago, it wiped out all non-avian dinosaurs and roughly a third of life on the planet. But many plants survived the devastation.  

In a new study publishing May 8 in the Cell Press journal Cell, researchers reveal that the accidental duplications of genomes—a natural phenomenon—might have helped many flowering plants survive some of the most extreme environmental upheavals in Earth’s history. This strategy could help plants adapt to the rapid climate changes unfolding today. 

“Whole-genome duplication is often seen as an evolutionary dead end in stable environments,” says author Yves Van de Peer of Ghent University in Belgium. “But in harsh situations, it can provide unexpected advantages.” 

Most organisms carry two sets of chromosomes, one from each parent. But in flowering plants, many species carry additional sets as a result of random whole-genome duplication. For example, most cultivated bananas have three sets of chromosomes while wheat plants can have as many as six, a condition known as polyploidy. 

Whole-genome duplication occurs relatively frequently in plants, and it can be costly. Larger genomes require more nutrients to maintain, increase the risk of acquiring harmful mutations, and affect fertility. For these reasons, only a small fraction of duplicated genomes are retained and passed down through generations in the wild.  

On the other hand, genome duplications can increase genetic variations, and genes can evolve new functions. These changes may help organisms better tolerate stress such as heat or drought. 

To understand why some duplicated genomes persist, Van de Peer and his team analyzed the genomes of 470 species of flowering plants, constructing one of the largest datasets of its kind. They looked for blocks of genes that appear in almost identical pairs—a marker of past whole-genome duplication events. Then, they compared the data with information from 44 plant fossils to estimate when these duplications occurred. 

Their analysis revealed a striking pattern. The researchers found that the genes that persist over time tend to originate from whole-genome duplications during major periods of environmental upheaval. These include the asteroid-triggered mass extinction 66 million years ago, several periods of global cooling when ecosystems collapsed, and the Paleocene-Eocene Thermal Maximum (PETM) about 56 million years ago—a period of rapid global warming. 

The findings help explain a long-standing puzzle of why polyploidy is common, but only a few persevere in plant genomes over millions of years. Under these extreme conditions, polyploid plants might have gained an edge. Traits that are normally disadvantageous, such as maintaining a larger and more complex genome, can become beneficial, say the researchers. 

The study also offers some clues about how plants may respond to climate change today. During the PETM, global temperatures rose by about 5 to 9°C (9 to 14°F) over roughly 100,000 years, a change comparable to the warming happening today.  

“While the current climate is warming at a much faster rate, what we see from the past suggests that polyploidy may help plants cope with these stressful conditions,” Van de Peer says.  

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This work was supported by Research Foundation­–Flanders, the European Research Council, and Ghent University. 

Cell, Chen et al., “The rise of polyploids during environmental upheaval” https://www.cell.com/cell/fulltext/S0092-8674(26)00397-1

Cell (@CellCellPress), the flagship journal of Cell Press, is a bimonthly journal that publishes findings of unusual significance in any area of experimental biology, including but not limited to cell biology, molecular biology, neuroscience, immunology, virology and microbiology, cancer, human genetics, systems biology, signaling, and disease mechanisms and therapeutics. Visit: http://www.cell.com/cell. To receive Cell Press media alerts, contact press@cell.com

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Better prepared for fluctuating light stress

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Plant stress and unique cAMP signaling



Plants evolved distinct functions for two forms of a fundamental signaling molecule


Institute of Science and Technology Austria

Arabidopsis thaliana (mouse ear cress) plants at different developmental stages 

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Plants evolved distinct functions for two forms of a fundamental signaling molecule. These create redundancy and more robustness. Arabidopsis thaliana (mouse ear cress) plants at different developmental stages, photographed at the Plant Facility of the Institute of Science and Technology Austria (ISTA)

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Credit: © ISTA





The molecule cAMP, which plays essential roles in mammalian cells, is less well understood in plants. In a new Science Advances paper, researchers from the Institute of Science and Technology Austria (ISTA) and international collaborators demonstrate that plants use two forms of cAMP in parallel to regulate normal cellular processes and respond to stress, while maintaining crosstalk between them. That crosstalk provides redundancy, so that if one fails, the other can compensate, allowing plants to respond more robustly to a wider range of environmental factors. Ultimately, the findings could help improve crop resilience and productivity in a rapidly changing climate.

Plants can’t escape danger. To cope with stresses such as heat, freezing, flooding, drought, or infection, they rely on biological mechanisms evolved over millions of years.

Different life forms face unique environmental challenges, driving them to evolve distinct biological processes. Although animals, plants, and microbes share many molecular mechanisms, insights from animal models often don’t apply directly to other kingdoms.

Cyclic adenosine monophosphate, also known as cAMP, is a fundamental signaling molecule known to play essential roles in both animal and plant cells. However, although its production and role in mammalian cells are well understood, its functions in plants remain largely unknown.

Now, ISTA alum Mingyue Li and professor Jiří Friml at the Institute of Science and Technology Austria (ISTA) have teamed up with scientists in Germany, Saudi Arabia, the Czech Republic, and the United States to shed light on cAMP in the plant model Arabidopsis thaliana, commonly known as mouse ear cress or thale cress.

Twin molecules with distinct but partially overlapping properties

In animal systems, the main form of cAMP, called 3’,5’-cAMP, is involved in the transfer of signals between nerve cells, hormone signaling, and the regulation of metabolic functions. This predominant form of cAMP is derived from the cell’s energy currency, ATP. However, cAMP has a ‘twin’ form: a molecule with the same chemical formula but different atomic bonds. Concretely, the phosphate group is attached to the adenosine molecule at a different location. This other form, called 2’,3’-cAMP, is associated with RNA degradation and stress response. Its levels are tightly controlled in mammalian cells because excessive amounts can be toxic.

Li, Friml, and their colleagues now show that, while both forms of cAMP exist in plants, the levels of 2’,3’-cAMP—the ‘other’ form of the molecule—are over 60 times higher than those of 3’,5’-cAMP, the main form found in animals.

Using a battery of molecular and cell biology techniques, the team demonstrates that the two forms of cAMP exhibit largely distinct functions in plant metabolism as well as in protein and gene regulation. While 3’,5’-cAMP appears to fine-tune responses related to growth, maintenance, nutrient status, and normal cell function, 2’,3’-cAMP triggers much broader effects in plants, including specialized metabolic pathways and broad stress responses. However, they also show that these functions partially overlap, suggesting that plants may have evolved distinct ways to adapt to environmental challenges.

Cross-talking signaling pathways

Maintaining two parallel but interconnected cAMP pathways could help plants fine-tune cellular regulation and distinguish among different external stimuli, including stress factors. Crosstalk between the pathways provides redundancy, so that if one fails, the other can compensate, allowing plants to respond more robustly to a wider range of environmental factors.

Ultimately, understanding how plants regulate stress and routine cellular functions could help boost crop productivity and enhance resilience to climate change.

Arabidopsis thaliana (mouse ear cress) plants and seedlings 

Plants evolved distinct functions for two forms of a fundamental signaling molecule. These create redundancy and more robustness. Arabidopsis thaliana (mouse ear cress) plants at different developmental stages, photographed at the Plant Facility of the Institute of Science and Technology Austria (ISTA)

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