Monday, November 27, 2023

 

Review article shows key role of Brazil in research on sugarcane for bioenergy


The study by researchers at the University of São Paulo also shows that genetic engineering techniques need to be improved in order to increase ethanol production without expanding crop acreage, a strategy considered crucial to cope with climate change


Peer-Reviewed Publication

FUNDAÇÃO DE AMPARO À PESQUISA DO ESTADO DE SÃO PAULO

The key role of Brazil in research on sugarcane for bioenergy 

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THE STUDY WAS CONDUCTED AT THE UNIVERSITY OF SÃO PAULO’S LABORATORY OF PLANT PHYSIOLOGICAL ECOLOGY 

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CREDIT: MARCOS BUCKERIDGE




Publications on sugarcane have increased exponentially since 2006 worldwide, and Brazil has had more articles published on the topic than any other country in the period, according to a review in BioEnergy Research.

The number of articles on the subject averaged about five per year between 1999 and 2006 but had reached 327 by 2021. Brazil has twice as many articles on sugarcane as the United States, which ranks first in the world for scientific publications in general. Brazil is also ahead of Australia, China and India, which are also major sugarcane growers.

According to the authors of the review, who are affiliated with the Laboratory of Plant Physiological Ecology (LAFIECO) at the University of São Paulo’s Institute of Biosciences (IB-USP), these statistics highlight Brazil’s importance to global sustainability efforts.

“Sugarcane is one of Brazil’s main tools for coping with climate change as ethanol from sugarcane is one of the most important renewable biofuels that can replace fossil fuels. However, there isn’t enough ethanol in the world. More needs to be produced, and this requires genetic improvement of sugarcane,” said Marcos Buckeridge, last author of the review and head of LAFIECO. 

The study was funded by FAPESP via three projects (19/13936-022/05524-7 and 22/00441-6). 

The review also discusses the history of sugarcane genetic improvement in Brazil from the arrival of the Portuguese to the currently available varieties. “Despite all the improvement, the genetic engineering strategies applied to sugarcane need to advance further compared to other crops. Moreover, we’ve reached a limit in genetic terms: we’ll have to increase the number of cells or their size for the plant to store more sugar, and this requires sophisticated techniques. Big data, advanced analytical methods, bioinformatics and substantial computational resources, among others, are needed to help improve sugarcane’s physiological performance and yield without expanding crop acreage,” Buckeridge explained.

Challenges ahead

Scientists all over the world who aim to control the behavior of sugarcane with precision and leverage its potential to help cope with the extreme droughts and floods that are part of climate change face two challenges. The first is the need for better genome sequencing. In Brazil, this effort is being led by Diego Pachon, a researcher at the University of São Paulo’s Center for Nuclear Energy in Agriculture (CENA-USP).

Once precise whole genome sequencing of sugarcane is successfully obtained, the next step will be to develop techniques capable of making specific modifications in the genome. The main hope for most scientists resides in CRISPR-Cas9 gene editing, currently being tested by Marcelo Menossi, a researcher at the State University of Campinas’s Institute of Biology (IB-UNICAMP).

Progress has also been achieved in the field in recent years in other major sugarcane production and research centers, such as the United States, India and Australia.

The review of the literature conducted by LAFIECO was supported by INCT Bioethanol, one of the National Institutes of Science and Technology (known as INCTs, the Portuguese-language acronym) in São Paulo state funded by FAPESP and the National Scientific and Technological Development Council (CNPq) – and the Research Center for Greenhouse Gas Innovation (RCGI), an Engineering Research Center (ERC) established by FAPESP and Shell at the University of São Paulo’s Engineering School (POLI-USP).

About São Paulo Research Foundation (FAPESP)

The São Paulo Research Foundation (FAPESP) is a public institution with the mission of supporting scientific research in all fields of knowledge by awarding scholarships, fellowships and grants to investigators linked with higher education and research institutions in the State of São Paulo, Brazil. FAPESP is aware that the very best research can only be done by working with the best researchers internationally. Therefore, it has established partnerships with funding agencies, higher education, private companies, and research organizations in other countries known for the quality of their research and has been encouraging scientists funded by its grants to further develop their international collaboration. You can learn more about FAPESP at www.fapesp.br/en and visit FAPESP news agency at www.agencia.fapesp.br/en to keep updated with the latest scientific breakthroughs FAPESP helps achieve through its many programs, awards and research centers. You may also subscribe to FAPESP news agency at http://agencia.fapesp.br/subscribe.

 

Maternal vaccination against COVID-19 lowered risk of preterm births, Stanford study finds


Peer-Reviewed Publication

STANFORD UNIVERSITY




During the first two years of the pandemic, a COVID-19 infection during pregnancy increased the risk of preterm birth and NICU hospitalizations. However, by 2022, when COVID-19 vaccines were readily available in the United States, this effect disappeared – suggesting that vaccination against the coronavirus may have prevented thousands of preterm births, according to a new study led by Stanford sociologist Florencia Torche.

The study’s findings, published Nov. 27 in the journal Proceedings of the National Academy of Sciences, show how vaccination against COVID-19 may have helped a generation of U.S. children avoid the long-term health issues and costs associated with premature delivery. As previous studies have shown, children who are born prematurely are more likely to encounter educational and economic setbacks later in life.

“The effects of COVID-19 on infant health may be among the most enduring legacies of the pandemic,” said Torche, the Dunlevie Family Professor in the School of Humanities and Sciences. “I hope the study provides strong evidence supporting the benefits of vaccination for the health of the next generation.”

Studying the effects of COVID-19 infection

Torche, along with Jenna Nobles at ​​the University of Wisconsin-Madison, based their study on natality data for California, a diverse and populous state that accounts for 12% of all U.S. births.

In June 2020, California began recording confirmed or presumed cases of COVID-19 infection for all mothers giving birth. This is also when the researchers began their analysis, focusing on facilities with documented, universal testing.

The researchers identified infants with siblings in the California birth records, which allowed them to compare “treated” infants exposed to COVID-19 infection in utero with their “untreated” siblings who did not experience a COVID infection.

The researchers also took into consideration the zip code of the mother’s residence to compare areas that had low and high uptakes of vaccination against COVID-19.

Some of Torche and Nobles’ key findings include:

  • Maternal COVID-19 infection increases the probability of preterm delivery, defined as a birth that occurs before 37 weeks of gestation, by 1.2 percentage points, from 7.1 to 8.3%. “This effect is roughly equivalent to in utero exposure to a 9 percentage point increase in the area-level unemployment rate – or to high-intensity wildfire smoke for 20 days – an enormous impact,” the researchers write.
  • Maternal COVID-19 infection also led to higher rates of premature delivery before 32 weeks of gestation, resulting in infants facing the highest risk of mortality, morbidity, and developmental difficulties later in life.
  • By January 2022, the impacts of COVID-19 on preterm births dropped to zero, but zip codes that had high vaccination rates saw the harmful effects disappear a year earlier than areas with a slower vaccination uptake.

How COVID-19 may exacerbate inequality

Torche and Nobles’ study is one of the first to offer a causal estimate of the impact of maternal COVID-19 infection on neonatal health.

With vaccine rates for the most recent booster hovering at about 7% of U.S. adults, Torche hopes the study emphasizes the importance of staying protected against the virus.

“Unfortunately, even if the adverse impact of COVID-19 infection on preterm birth has plummeted to zero, this adverse impact is likely to emerge again as the virus continues to evolve and mutate, and as vaccine-driven immunity wanes,” Torche said.

The study builds on Torche and Nobles’ previous work that looked at the socioeconomic disparities of the COVID-19 pandemic and its impacts on inequality in the U.S. – an issue Torche is concerned about here, too.

“Barriers to vaccination are higher in disadvantaged and racialized populations, including people with less education and those living in rural areas, i.e. populations that experience much worse infant health even in absence of COVID-19,” Torche said. “This suggests COVID-19 will further exacerbate disparities in infant health in the United States.”

This research was funded by the Eunice Kennedy Shriver National Institute of Child Health and Human Development (NICHD) and by the National Science Foundation (NSF).

Study: Spike in premature births caused by COVID, halted by vaccines


Peer-Reviewed Publication

UNIVERSITY OF WISCONSIN-MADISON




MADISON, Wis. — COVID-19 caused an alarming surge in premature births, but vaccines were key to returning the early birth rate to pre-pandemic levels, according to a new analysis of California birth records.

“The effect of maternal COVID infection from the onset of the pandemic into 2023 is large, increasing the risk of preterm births over that time by 1.2 percentage points,” says Jenna Nobles, a University of Wisconsin–Madison sociology professor. “To move the needle on preterm birth that much is akin to a disastrous environmental exposure, like weeks of breathing intense wildfire smoke.”

But the first two years of the pandemic alone were far worse for many pregnancies, according to findings Nobles and co-author Florencia Torche, a Stanford University sociology professor, published today in the Proceedings of the National Academy of Sciences.

The virus that causes COVID-19 endangers pregnancies by causing immune and inflammation responses, and via deterioration of the placenta. One consequence is early interruption of the pregnancy and birth well in advance of the end of the expected 39- to 40-week gestation.

As the virus spread from July to November of 2020, the likelihood that a mother with COVID-19 in California would give birth more than three weeks before the due date was 5.4 percentage points higher than anticipated — 12.3% instead of 6.9% — according to the new study.

The researchers measured the impact of the pandemic with the help of birth records for California’s nearly 40 million people, using information on birth timing and the comparison of sibling births to help control for the pandemic’s disparate impacts on different demographic groups. They found the excess risk of preterm birth fell slightly in early 2021 before dropping steeply in 2022, at which point maternal COVID-19 infection in pregnancy caused no excess risk of preterm birth for infants. 

Vaccines contributed to that decrease, the researchers say, an effect that jumps out when the birth records are divided up geographically.

“In ZIP codes with the highest vaccination rates, the excess risk of preterm birth declines much faster. By summer 2021, having COVID-19 in pregnancy had no effect on preterm birth risk in these communities. It takes almost a year longer for that to happen in the ZIP codes with the lowest vaccine uptake,” Nobles says. “That highlights how protective COVID vaccines have been. By increasing immunity faster, early vaccination uptake likely prevented thousands of preterm births in the U.S.”

Preterm birth is associated with a host of short- and long-term health problems and deficiencies for the children and their families. It’s the leading contributor to infant mortality, and cutting short development in the womb can require additional medical attention that costs, on average, more than $80,000 per child. Preterm birth by even just a few weeks reduces expected educational attainment, health and earnings as an adult.

“And we found similar increases, of about 38%, in the risk of very preterm birth — that is pre-32 weeks — when a child is likely to need neonatal intensive care, with the possibility of developmental delays and serious implications for their families as well,” Nobles said.

The evidence showing the positive effects of vaccination in preventing premature births could help allay some of the most prominent concerns voiced as COVID-19 vaccines became available to pregnant patients.

“One big contributor to vaccine hesitancy is that people are worried about safety for the fetus and about the ability to get pregnant,” Nobles says. “We already know there is very little evidence of adverse effects of vaccination on fetal development. The results here are compelling evidence that what will actually harm the fetus is not getting vaccinated. That’s a message practitioners can share with concerned patients.”

The results should be a compelling argument in favor of getting vaccinations and boosters, according to the researchers, even after COVID-related premature birth risk ebbed in California.

“This is still an evolving epidemic, and the rate of vaccine boosters among pregnant people right now is very low,” Nobles says. “The question is, how many more iterations of viral evolution does this need to escape the immunity that we have? It’s miraculous and incredible that we're now down to essentially zero additional preterm births, but it does not indicate that it’s going to be that way in perpetuity.”

This research was supported in part by grants from the National Science Foundation (NSF2049529) and the National Institutes of Health (R21 HD105361-01).

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— Chris Barncard, barncard@wisc.edu

 

Why does puberty trigger us to stop growing?


Peer-Reviewed Publication

UNIVERSITY OF ILLINOIS CHICAGO




All animals start out as a single-celled organism and then start growing. At some point, of course, they need to stop getting bigger, but the process by which this happens is poorly understood. 

New research from Alexander Shingleton at the University of Illinois Chicago and colleagues identifies a potential trigger that makes fruit flies stop growing, which has implications for understanding human development. The research is published in the Proceedings of the National Academy of Sciences

In humans, the body’s signal to stop growing happens around puberty, though it takes several more years before growth actually ceases. It is important to better understand this process in part because of recent changes in how children experience puberty. 

“We know that the onset of puberty is getting younger and younger. But in order to understand why something is changing, you need to understand how it works,” said Shingleton, a professor of biological sciences.  

So the researchers looked at fruit flies, which undergo the equivalent of puberty when they metamorphosize from larvae into adults. The theory among many biologists has been that a larva stops growing when it reaches a certain body size, which triggers it to start the process of becoming an adult. Other insects do this, such as the kissing bug, which uses a “stretch receptor” in its abdomen to monitor its size, Shingleton explained.  

But Shingleton and his coauthors weren’t convinced that fruit flies were using such a mechanism. They hypothesized that it had something to do with a steroid hormone involved in fruit fly growth called ecdysone, which is similar to estrogen and testosterone in humans.  

The researchers used a mathematical model to explore their idea. The model showed that body size is not the trigger that causes a fruit fly to stop growing. Instead, a “stop growing” switch is triggered by the gland that makes ecdysone. In the larval stage, that gland receives lots of nutritional information that helps it decide how to regulate ecdysone production. But once ecdysone reaches a certain level, the gland no longer needs that nutritional information to make decisions and starts regulating itself. 

The researchers believe this switch from needing nutritional information is what triggers the fruit fly to stop growing. “It’s not that the fly is measuring itself in a direct way,” Shingleton said.  

He’d like to see similar studies done on mammals, which could shed more light on the growth-stopping process in humans. But Shingleton suspects that the fruit fly experience is related to ours, given that both involve similar steroid hormones and both fruit flies and humans convey nutritional information via insulin. 

The other researchers on the project are UIC undergraduate student Amirali Monshizadeh, John Tyson at Virginia Tech and Stanislav Shvartsman at Princeton.

Written by Emily Stone 

 

Not only is virtual care safe, patients and providers use it effectively, new research finds


Peer-Reviewed Publication

MCMASTER UNIVERSITY




New research from McMaster University has found that not only is virtual care a safe way to hold medical appointments, but that patients and physicians were able to use it appropriately and effectively with minimal guidance.

The study, published in Healthcare Quarterly on Nov. 27, was led by Shawn Mondoux, an emergency physician and associate professor in the Department of Medicine at McMaster. Mondoux and his team wanted to find out just how safe virtual care is when compared to an in-person assessment.

To do this, researchers keyed in specifically on virtual care in Ontario and utilized data from ICES. This included data from the Ontario Health Insurance Plan (OHIP) database. Virtual care has seen a meteoric rise in use since the beginning of the pandemic and can include video and phone appointments.

Then, to ensure an appropriate comparison, they grouped patients based on several conditions, like age, gender, similar historical illnesses, and their history of diagnosis. This resulted in more than 18 million visits being included in the analysis, split evenly between virtual and in-person care. Researchers then looked at patient outcomes at seven and 30 days following their appointment.

“So the result was that when you look at the two populations together, those who were seen in virtual care had less bad outcomes, had less hospitalization, and less visits to intensive care units, and really had less health care visits, with the exception of one place, which was they tended to see their own family doctors virtually more often than patients seen in-person,” Mondoux says.

It’s important to note that the researchers couldn’t account for the acuity of the patients between the groups in this study.

“So, if you're super sick, you as a patient may in fact choose to say, ‘I'm really sick. This isn't a virtual call thing. I'm going into the emergency department, or I'm going to go see my doctor, or I'm going to go see my specialist.’ And very reasonably, your family physician may also say the same thing. That acuity or that level of sickness isn't something we could totally match for.”

Mondoux says that virtual care is not only safe, but that patients and physicians are making good choices about the use of it.

“The in-person care system is probably taking care of much sicker patients, which is exactly what it should be doing. We released a technology that was brand new. And somehow, everybody just knew how to use it really well.”

Mondoux hopes the research can spur a conversation amongst policymakers about the use of virtual care, by turning the topic away from it being about whether it’s effective, and instead focus on who it is best suited for.

“This can save patients travel to a hospital, parking, and commute time. And there's a lot of patients out there who don't have access to their own vehicle or family members to do all this stuff. So, this is  a helpful modality,” he says.

This study received funding from the Juravinski Research Institute and the Graham Farquharson Knowledge Translation Fellowship.

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To arrange an interview with lead author Shawn Mondoux, you can email him directly at mondous@mcmaster.ca.

 

Honeybee cluster—not insulation but stressful heat sink


Peer-Reviewed Publication

UNIVERSITY OF LEEDS

Tree nest and hive together 

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TREE NEST AND HIVE TOGETHER

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CREDIT: D. MITCHELL




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A Leeds researcher is keen to help beekeepers shape their practices following his study which appears to disprove the widespread belief that honeybees naturally insulate their colonies against the cold. His findings suggest that the creatures are potentially being subjected to thermally-induced stress.

University of Leeds PhD student Derek Mitchell is calling for further debate on the ethical treatment of insects, saying his research appears to contradict the widely-accepted theory that the bees’ reaction to cold temperatures is to form layers of insulation – an idea that has led to them being housed in hives that are extremely poorly insulated compared to their natural habitat.

The study, which is published in the Journal of the Royal Society Interface, looks at honeybee “clusters” - where the insects huddle together, forming dense disks between the combs, to try to keep some of them above 18°C when the outside temperature drops. For almost 120 years, the outer layer of honeybees in the winter cluster – known as the mantle - has been said to insulate the cluster core – the honeybees at the centre.

Adopting the same techniques used for measuring heat loss from buildings, Mr Mitchell - from the School of Mechanical Engineering - analysed this theory. However, his findings indicate that far from acting as insulation, the mantle instead acts like a heat sink – dissipating the heat away from the centre. The paper states: “The cluster mantle does not meet any the four insulation criteria identified and meets all three heat sink criteria.” 

Mr Mitchell said: “My findings are controversial because it has become a tenet of beekeeping - that the mantle insulates the honeybees.” 

He explains that once the outside temperature falls, the heat needed to sustain 18°C+ inside goes up. If the bees cannot produce that much heat, the temperature near the hive wall drops and the honeybees near it become chilled and they move closer to bees that can still efficiently produce heat. They get closer together and their combined thermal conductivity increases, which further increases the heat loss.

He said: “This new research indicates that, rather than being benign, clustering is a survival behaviour in response to an existential threat - resulting in increased stress due to cold and exertion. Some honeybees may even eat their own young to survive.”

He added: “In anthropomorphic terms, clustering is not a “wrapping of a thick blanket” to keep warm - but more like a desperate struggle to crowd closer to the “fire” or otherwise die.”

He said: “I want to share my research, to raise awareness of the welfare issues and to help educate beekeepers about the complex interaction of the colony enclosure and thermofluids - heat, radiation, water vapour, air - with honeybee behaviour and physiology.”

Harvey M. Thompson, Professor of Computational Fluid Dynamics at the University of Leeds, who supervised the new research, said: “It’s great to see how mechanical engineering can be applied to such a variety of fields and how these findings can potentially be used to help beekeepers in the future.”

Mr Mitchell’s research came about when his wife took up beekeeping and he noticed that people still used hives designed in the 1930s and 1940s.

He said: “The hives beekeepers used were at odds with what I knew about heat transfer and what beekeepers had told me about honeybees. I thought I could build better hives, so started out trying to find the requirements of the honeybees and found out that nobody knew in terms that made engineering sense.”

After studying mechanical engineering as a student apprentice, he returned to the subject as a PhD student. Using engineering techniques more commonly used to solve industrial problems, his previous research suggested that most manufactured hives have seven times more heat loss than natural nests.

Mr Mitchell, who also has a Physics BSc, Microelectronics MSc and worked in spacecraft ground control software, said he believed misconceptions around clustering had, in part, arisen because the creatures’ overwintering behaviour was dominated by observations in thin (19mm) wooden hives, with very different thermal properties to their natural habitat of thick walled (150mm) tree hollows.

He said those long-held beliefs have encouraged enforced clustering, by beekeepers’ dominant use of what he labels “inadequately insulated hives” and, in North America, refrigeration. This is often seen as a benign or even a necessary process, with beekeeping and academic research considering these conditions of extreme heat loss as natural and normal. 

He is calling for changes in practice to be urgently considered, researched and promoted, as well as further debate on the ethical treatment of honeybees and insects. 

Research paper: Honeybee cluster—not insulation but stressful heat sink is being published in the Journal of the Royal Society Interface at 00.01 GMT on November 22, 2023. When the embargo lifts, the paper will be available on the journal website: https://doi.org/10.1098/rsif.2023.0488

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