Tuesday, February 18, 2025

 

Machine learning maps animal feeding operations to improve sustainability


Model predicts presence of animal feeding operations with 87 percent accuracy.


University of Arkansas System Division of Agriculture

Portrait photo of Becca Muenich 

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Becca Muenich, associate professor of biological and agricultural engineering.

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Credit: U of A System Division of Agriculture photo.




FAYETTEVILLE, Ark. — Understanding where farm animals are raised is crucial for managing their environmental impacts and developing technological solutions, but gaps in data often make it challenging to get the full picture.

Becca Muenich, biological and agricultural engineering researcher, set out to fill the gap with a new technique for mapping animal feeding operations.

Without proper control strategies, the waste generated by these operations can pose significant ecological harm, Muenich said, such as surface water contamination with excess phosphorus and nitrogen. Animal feeding operations are defined as facilities that feed animals for at least 45 days per year in a confined area that does not grow grass or forage. For Muenich, a water quality engineer who focuses on how water moves through landscapes and how it can pollute areas by picking up and moving toxic materials, this issue piqued her interest.

“We can’t really address something if we don’t know where the problem is,” said Muenich, an associate professor with the College of Engineering at the University of Arkansas and researcher for the Arkansas Agricultural Experiment Station, the research arm of the University of Arkansas System Division of Agriculture.

“We don’t have a good nationwide — even at many state levels — understanding of where livestock are in the landscape, which really hinders our ability to do some of the studies that I was interested in,” she said.

Muenich said there has been a rise in these feeding operations in response to increasing population size and global demand for livestock products.

Considering key predictors of feeding operation presence such as surface temperature, phosphorus levels and surrounding vegetation, Muenich’s team built a machine learning model that can predict the location of feeding operation locations without using aerial images. Machine learning models are a type of computer program that can use algorithms to make predictions based on data patterns.

The model was developed using data encompassing 18 U.S. states. The data was broken up into individual parcels based on ownership. Testing against a dataset of known animal feeding operations, the model predicted their location with 87 percent accuracy.

The study, “Machine learning-based identification of animal feeding operations in the United States on a parcel-scale,” was published in Science of the Total Environment in January.

Filling in the gaps

Previous attempts at identifying animal feeding operations have often relied on aerial images, Muenich said, but livestock facilities often look different between states and by animal, so she and her team aimed to employ further strategies.

She explained the lack of understanding surrounding livestock locations often comes from differences in how states interpret the Clean Water Act, which requires farms classified as “concentrated animal feeding operations” to get permits through the National Pollutant Discharge Elimination System. These facilities are a type of animal feeding operation with more than 1,000 animal units.

Despite the national regulation, states administer this permitting differently, leading to differences in available data.

For example, Muenich built a watershed model in an area with of Michigan and Ohio that included multiple feeding operations. Data was readily available through the pollutant elimination system for Michigan due to the state’s permitting requirements. The same data, however, wasn’t available for the same operations in Ohio, which set Muenich down this path of investigation.

Advancing towards a better accounting of livestock can help with developing strategies that can improve environmental outcomes of livestock management while creating economic opportunities for farmers through the scaling up of technologies aimed at combating animal waste, Muenich said. Scaling these technologies in economically feasible ways requires knowledge of where livestock are most prevalent and spatially connected, she explained.

Co-authors of the study included Arghajeet Saha, formerly a postdoctoral researcher at the University of Arkansas and currently an assistant scientist with the Kansas Geological Survey; Barira Rashid, Ph.D. student at the University of Arkansas; Ting Liu, a research associate with the University of Arkansas biological and agricultural engineering department; and Lorrayne Miralha, an assistant professor with The Ohio State University’s department of food, agricultural and biological engineering.

The research was supported by the Science and Technologies for Phosphorus Sustainability Center under National Science Foundation award number CBET-2019435. The Data with Purpose program from Regrid, a source for nationwide land parcel data, provided data used in the research.

​To learn more about the Division of Agriculture research, visit the Arkansas Agricultural Experiment Station website. Follow us on 𝕏 at @ArkAgResearch, subscribe to the Food, Farms and Forests podcast and sign up for our monthly newsletter, the Arkansas Agricultural Research Report. To learn more about the Division of Agriculture, visit uada.edu. Follow us on 𝕏 at @AgInArk. To learn about extension programs in Arkansas, contact your local Cooperative Extension Service agent or visit uaex.uada.edu.


About the Division of Agriculture

The University of Arkansas System Division of Agriculture’s mission is to strengthen agriculture, communities, and families by connecting trusted research to the adoption of best practices. Through the Agricultural Experiment Station and the Cooperative Extension Service, the Division of Agriculture conducts research and extension work within the nation’s historic land grant education system.

The Division of Agriculture is one of 20 entities within the University of Arkansas System. It has offices in all 75 counties in Arkansas and faculty on three campuses.

The University of Arkansas System Division of Agriculture offers all its Extension and Research programs to all eligible persons without regard to race, color, sex, gender identity, sexual orientation, national origin, religion, age, disability, marital or veteran status, genetic information, or any other legally protected status, and is an Affirmative Action/Equal Opportunity Employer.

ANARCHY IN THE WORKPLACE

Avoiding the workplace mediocrity trap



In team-based settings, workplace exclusion can push high-achieving employees to intentionally sabotage productivity, a costly risk for organizations across industries, Rutgers researchers find



Rutgers University




Confidence. Persistence. Ingenuity. Conventional wisdom tells us these are some of the traits needed for success at the office. But within teams, less laudable characteristics – maintaining the status quo, for instance – might be just as desirable, according to new Rutgers research.

Cong Liu, an expert on organizational thinking at the Rutgers Graduate School of Applied and Professional Psychology, reports in the Journal of Occupational Health Psychology that teams with high rates of envy often ostracize their best performers, in turn leading those standout employees to sabotage productivity.

“In organizations, there are good soldiers who help facilitate workplace efficiency and effectiveness and bad apples who hinder productivity and well-being,” Cong wrote. “Over the years, there has been mounting evidence that this distinction between good and bad behaviors … might not be as stark as we think.”

What’s often overlooked is how workplace ostracism can blur this line. When high-performing employees – good soldiers – are excluded or undervalued by their peers, their motivation can shift from driving success to undermining it, Cong said. This exclusion can lead to frustration, disengagement, and even intentional underperformance, effectively turning them into bad apples.

To illuminate this process, Cong and colleagues surveyed 630 workers in 131 workplace teams across a wide swath of industries based in China, including health care, finance, real estate and manufacturing. Participants worked in teams of three or more. More than two-thirds of respondents were women, and most participants had been on the job for about six years. While the study was conducted in China, its findings are universally applicable, especially in team-driven environments like those found in the American workforce.

“If proactive employees are ostracized by their coworkers, organizations will bear a heavy toll,” Cong said.

Two in-person surveys were administered a month apart. In the first survey, employees rated perceived levels of proactivity, envy, coworker ostracism, negative emotions and job satisfaction. In the second, employees were asked to evaluate their own “production deviance,” a measure of intentional underperformance.

Through statistical modeling, the researchers found that teams with higher rates of envy were more likely to exclude proactive employees – and that the targets of this exclusionary behavior exhibited greater production deviance.

While the study didn’t quantify productivity losses, Cong said previous work demonstrates that poorly managed workplace dynamics can lead to significant production fallout. In today’s fast-paced work environment, where collaboration is key, even small disruptions in team dynamics can have far-reaching consequences.

Addressing team-based ostracism and potential production declines is never easy, said Cong. Jealousy, envy and pride are human characteristics, as is so-called “upward comparison” – the sense of inadequacy someone might feel when working with higher-yielding colleagues. In corporate America, where performance metrics are often public and competition is encouraged, these emotions can be amplified, making it even more critical for managers to intervene.

“Take sales,” Cong said. “If one team member beats the sales quota, the entire team benefits but underperforming colleagues might still be viewed by management as less effective.” 

This can lead team members to assume that being a “middle performer” is the safest place to be, she added.

There are steps employers can take to guard against these corrosive dynamics, said Cong. Most important is recognizing that every employee should be judged on their own merits – rather than against the output of the top performers.

“Managers should always encourage proactive behaviors but should also ensure that performance evaluations are based on required outputs, rather than comparing employees to top performers,” Cong said. “It’s essential to treat each team member as an individual, valuing their unique contributions rather than viewing them through the lens of their peers.”

Cong added: “In today’s workplace, where collaboration and innovation drive success, creating an inclusive and supportive environment isn’t just effective management – it’s a strategic advantage for any business.”

From plants to people: How amino acid, vitamin balance links plant immunity to epilepsy



A groundbreaking study led by a team of researchers at the University of Kentucky has revealed a surprising biochemical connection between plant immune responses and human neurological health.




University of Kentucky

UK_Pradeep and Aardra Kachroo 

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Pradeep (left) and Aarda Kachroo (right) are leading experts in plant pathology. Both are professors in the UK Martin-Gatton College of Agriculture, Food and Environment. Photo by Martin-Gatton CAFE.

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Credit: Photo by Martin-Gatton CAFE.




A groundbreaking study led by a team of researchers at the University of Kentucky’s Martin-Gatton College of Agriculture, Food and Environment has revealed a surprising biochemical connection between plant immune responses and human neurological health.

Researchers have discovered that the metabolic pathways regulating vitamin B6 homeostasis — critical in certain forms of epilepsy and immune function — are shared by plants and humans.

This study was published in the prestigious journal Nature Plants and supported with funding from the U.S. National Science Foundation and the National Institute of Food and Agriculture, part of the U.S. Department of Agriculture.

It highlights the importance of plant-based diets as a source of essential vitamins and amino acids, reinforcing the deep biochemical connections between plant resilience and human health.

Understanding these shared metabolic pathways opens new avenues for improving both crop resilience and human nutrition.

The study focuses on lysine catabolism. Catabolism, the breakdown of nutrients, is part of metabolism — the complex series of chemical reactions that sustain life. Lysine is an important amino acid required for protein synthesis, collagen formation, calcium absorption and the production of enzymes, hormones and antibodies.  

Researchers found that plants produce Δ1-piperideine-6-carboxylic acid (P6C) as part of lysine breakdown, mirroring a process in humans where elevated P6C levels are linked to pyridoxine-dependent epilepsy. In plants, increased P6C levels disrupted vitamin B6 balance, depleting key forms of B6 and compromising systemic immunity.

“Our findings highlight the deep evolutionary processes that shape biochemical signaling across life forms,” said Huazhen Liu, Ph.D., the study’s lead researcher and a postdoctoral scholar in the Department of Plant Pathology in Martin-Gatton CAFE.

“The same molecular pathways that regulate plant immunity are also involved in human neurological health, emphasizing how fundamental metabolites like vitamins and amino acids have been conserved throughout evolution,” said Liu.

The study also sheds light on the evolutionary origins of these metabolic pathways. Researchers found that certain enzymes involved in lysine and proline metabolism in plants were likely acquired from bacterial sources through horizontal gene transfer. Over time, these enzymes were repurposed to safeguard vitamin B6 levels and detoxify short-lived, high-energy molecules known as reactive metabolic intermediates.

Beyond its implications for plant immunity, this discovery underscores the broader impact of diet on human health. Vitamin B6, found in many plant-based foods, is essential for neurotransmitter function, immune responses and metabolism. The research suggests that disruptions in amino acid metabolism could have widespread effects across biological systems, linking plant and human health in unexpected ways.

“It is important that we approach vitamin supplementation cautiously and rely primarily on plant-based diets to meet our daily nutritional needs,” said Pradeep Kachroo, Ph.D., professor of plant pathology in Martin-Gatton CAFE, an American Association for the Advancement of Science Fellow and a leading expert in plant systemic immunity.

The research team also includes Aardra Kachroo, Ph.D., professor of plant pathology in Martin-Gatton CAFE, along with their collaborators from the National Library of Medicine at the National Institutes of Health, SCIEX and the University of Warwick in Coventry, England.

The Center for Agricultural and Life Sciences Metabolomics (CALM) in Martin-Gatton CAFE also played an instrumental role in the study. You can learn more about CALM online.

You can find the full study online here.

Research reported in this publication was supported by the U.S. National Science Foundation under Award Nos. 0421914, 051909 and 0817818. The opinions, findings, and conclusions or recommendations expressed are those of the author(s) and do not necessarily reflect the views of the U.S. National Science Foundation.

This material is based upon work that is supported by the National Institute of Food and Agriculture, U.S. Department of Agriculture, under award number 13323564. Any opinions, findings, conclusions or recommendations expressed in this publication are those of the author(s) and do not necessarily reflect the view of the Department of Agriculture.

 

Study by Montana State ecologist finds eastern monarch butterflies delaying fall migration




Montana State University
Monarch butterfly 

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A monarch butterfly (Danaus plexippus) on common milkweed (Asclepias syriaca).

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Credit: Cody Prouty




BOZEMAN – From 2003 to 2019, amateur butterfly enthusiast Harlan Radcliff spent his lunch breaks observing butterflies on the grounds of the Camp Dodge military installation in central Iowa.

Over those years, between the months of April and November, Radcliff meticulously recorded the dates, times, locations and numbers of the butterflies he spotted, creating a dataset that made it possible for a Montana State University ecologist to pinpoint how climate variations have affected the migratory patterns of Camp Dodge’s monarch butterfly population in the 21st century. The results were published this week in the Journal of Animal Ecology.

Diane Debinski, professor and head of MSU’s Department of Ecology in the College of Letters and Science, is the lead author of the paper, which details the findings of research she led at Camp Dodge in the core of the eastern monarchs’ summer breeding range. The work was funded by the U.S. Department of Defense as part of a larger study of the effects of climate change on three ecologically significant species of butterflies that use DoD lands and whose populations are declining. 

Debinski, one of four principal investigators for the project, led the study of eastern monarchs, who winter in Mexico and spend summers east of the Rockies. Monarch butterflies – including western monarchs, who winter in California and spend summers west of the Rockies – were recently proposed for listing as threatened under the Endangered Species Act. The paper’s co-authors include three other butterfly ecologists: Elizabeth Crone of the University of California, Davis; Sonia Altizer of the University of Georgia; and Norah Warchola of Iowa State University.  

Debinski said her team expected to find that environmental variation and climate change were affecting the phenology, or timing, of important events for the Camp Dodge monarch population, including arrival and departure dates and the timing of their peak summer abundance in the field.

“We wanted to look at phenology of butterflies and test whether it was shifting, and if it was, to ask how that might affect the viability of the populations over the long term,” she said. 

Similarly, the team looked at phenological changes of the Camp Dodge monarchs’ host plant, common milkweed, where females lay their eggs, and which serve as a major source of food for the camp’s population of monarch caterpillars. The researchers wanted to know whether any phenological changes in the milkweed were occurring in tandem with those of the butterflies.

“If one shifts and the other doesn’t, you could have a situation called asynchrony, where the butterflies arrive and the milkweed isn’t growing yet, or maybe the plant has grown too early and dried out,” Debinski explained. For historic information about Midwestern milkweed growth, the researchers consulted data kept by herbariums in Iowa, Minnesota and Wisconsin.

The field component of the study was done in 2020. Monarch eggs were placed on milkweed plants at staggered intervals to assess whether a shift in monarch spring arrival times – if one existed – affected how the larvae developed. One group was placed two weeks earlier than the monarchs’ historic recorded arrival date, another at the expected date, and a third about two weeks later than usual. 

The researchers designed the test according to the effect they expected to see: an earlier spring arrival date of the monarchs at Camp Dodge. Instead, Debinski said, they found that the timing of the monarchs’ arrival had not changed but that by 2019, the butterflies were staying for nine days longer in the fall than they had in 2003. The observed shift for milkweed was similar, with the plant blooming later into the season, also by about nine days.

“What we saw was that milkweed herbarium specimens were collected later over time, indicating that they were blooming longer over time, and monarchs were in the field as adults longer over time, which means that the fall season was actually indicating a change,” Debinski said. “This means that we need to look more at the phenology of the fall season, given that it could have implications for population dynamics over time. A longer season could have benefits, and it could also have costs.”

The costs could include longer exposure for the insects to predators or parasites, or the creation of what ecologists call a “development trap,” which occurs when a new generation embarks on a phase of seasonal development that it doesn’t have time to complete. For example, eggs could be laid so late that they are unable to develop into adults, or adults could emerge from their chrysalises when conditions are no longer suitable for fall migration.

Though the field survey showed that monarch arrival times did not change between 2003 and 2019, the experiment indicated that such a change would be costly. In the Camp Dodge experiment, early-season larval survival was higher when the timing of the hatch matched that of the natural monarchs, while survival was lowest when egg hatching  shifted two weeks earlier. That finding might be relevant for monarch populations in other areas of the eastern range, Debinski said, especially if the species of milkweed they depend on is undergoing different phenological shifts than common milkweed.

Though Radcliff, the enthusiast who gathered the original Camp Dodge data, has since passed away, Debinski said the legacy of the notes he kept for 17 seasons were “an amazing gift” to the study, which also revealed that monarch population growth at Camp Dodge declined between 2003 and 2019 – a finding consistent with U.S. Fish and Wildlife Service statistics showing significant decline over past decades. 

“Discussions about phenology often exclude migratory butterflies, because they experience climates in multiple places,” she said.  “Our research showed that even migratory species can show shifts in phenology. The more information we have about phenology, population sizes and population growth rates, the better we will be able to conserve monarch butterflies and many other species of conservation concern.”