Friday, May 16, 2025

 

Fossil tracks show reptiles appeared on Earth up to 40 million years earlier




Flinders University

Flinders researchers 

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Dr Aaron Camens, Professor John Long and Dr Alice Clement with a replica of the fossil trackways at Flinders University's Palaeontology Lab.

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Credit: Flinders University





The origin of reptiles on Earth has been shown to be up to 40 million years earlier than previously thought – thanks to evidence discovered at an Australian fossil site that represents a critical time period.

Flinders University Professor John Long and colleagues have identified fossilised tracks of an amniote with clawed feet – most probably a reptile – from the Carboniferous period, about 350 million years ago.

“Once we identified this, we realised this is the oldest evidence in the world of reptile-like animals walking around on land – and it pushes their evolution back by 35-to-40 million years older than the previous records in the Northern Hemisphere,” says Professor Long, Strategic Professor in Palaeontology at Flinders.

Published today in the journal Nature, this discovery indicates that such animals originated in the ancient southern supercontinent of Gondwana, of which Australia was a central part

The fossil tracks, discovered in the Mansfield district of northern Victoria in Australia, were made by an animal that Professor Long predicts would have looked like a small, stumpy, Goanna-like creature.

“The implications of this discovery for the early evolution of tetrapods are profound,” says Professor Long.

“All stem-tetrapod and stem-amniote lineages must have originated during the Devonian period – but tetrapod evolution proceeded much faster, and the Devonian tetrapod record is much less complete than we have believed.”

Fossil records of crown-group amniotes – the group that includes mammals, birds and reptiles – begin in the Late Carboniferous period (about 318 million years old), while previously the earliest body fossils of crown-group tetrapods were from about 334 million years ago, and the oldest trackways about 353 million years old.

This had suggested the modern tetrapod group originated in the early Carboniferous period, with the modern amniote group appearing in the early part of the Late Carboniferous period.

“We now present new trackway data from Australia that falsify this widely accepted timeline,” says Professor Long, who worked with Australian and international experts on the major Nature journal paper.

“My involvement with this amazing fossil find goes back some 45 years, when I did my PhD thesis on the fossils of the Mansfield district, but it was only recently after organizing palaeontology field trips to this area with Flinders University students that we got locals fired up to join in the hunt for fossils.

“Two of these locals – Craig Eury and John Eason (coauthors on the paper) – found this slab covered in trackways and, at first, we thought they were early amphibian trackways, but one in the middle has a hooked claw coming off the digits, like a reptile – an amniote, in fact.

“It was amazing how crystal clear the trackways are on the rock slab. It immediately excited us, and we sensed we were onto something big – even though we had no idea just how big it is.”

The Flinders palaeontology team working on this project included Dr Alice Clement, who scanned the fossil footprints to create digital models that were then analysed in detail, working closely with a team from Uppsala University led by Professor Per Erik Ahlberg, a member of the Royal Swedish Academy of Sciences.

“We study rocks and fossils of the Carboniferous and Devonian age with specific interest to observe the very important fish-tetrapod transition,” says Dr Clement.

“We’re trying to tease apart the details of how the bodies and lifestyles of these animals changed, as they moved from being fish that lived in water, to becoming tetrapods that moved about on land.”

Another coauthor Dr Aaron Camens, who studies animal trackways from around Australia, produced heatmaps that explain details of the fossil footprints much more clearly.

“A skeleton can tell us only so much about what an animal could do, but a trackway actually records its behaviour and tells us how this animal was moving,” says Dr Camens.

Because Professor Long had been studying ancient fish fossils of this area since 1980, he had a clear idea of the age of rock deposits in the Mansfield district – from the Carboniferous period, which started about 359 million years ago.

“The Mansfield area has produced many famous fossils, beginning with spectacular fossil fishes found 120 years ago, and ancient sharks. But the holy grail that we were always looking for was evidence of land animals, or tetrapods, like early amphibians. Many had searched for such trackways, but never found them – until this slab arrived in our laboratory to be studied.

“This new fossilised trackway that we examined came from the early Carboniferous period, and it was significant for us to accurately identify its age – so we did this by comparing the different fish faunas that appear in these rocks with the same species and similar forms that occur in well-dated rocks from around the world, and that gave us a time constraint of about 10 million years.”

La Trobe University's Dr Jillian Garvey, who liaised with the Taungurung Land and Waters Council for the study, has researched in the Mansfield basin since the early 2000s.

"This discovery rewrites this part of evolutionary history," Dr Garvey says. "It indicates there is so much that has happened in Australia and Gondwana that we are still yet to uncover."

The research – ‘Earliest amniote tracks recalibrate the timeline of tetrapod evolution’ (2025) by John A Long, Grzegorz Niedźwiedzki, Jillian Garvey, Alice M Clement, Aaron B Camens, Craig A Eury, John Eason and Per E Ahlberg (Uppsala University) – has been published in Nature. DOI: 10.1038/s41586-025-08884-5

Available online: https://www.nature.com/articles/s41586-025-08884-5

Videos and images: Fossil tracks show reptiles appeared on Earth up to 40 million years earlier - Google Drive

 

Marsupial research reveals how mammalian embryos form




The Francis Crick Institute




Researchers at the Francis Crick Institute have revealed insight into why embryos erase a key epigenetic mark during early development, suggesting this may have evolved to help form a placenta.

Epigenetic changes are modifications to DNA that don’t change the underlying DNA sequence, like notes written on a recipe. They keep gene expression in check, affecting which genes are turned on or off.

A universally inherited epigenetic change among mammals, called DNA methylation, is wiped from the embryo before it implants, and is one of the earliest events in mammalian development. However, the reason for this dramatic erasure has remained mysterious.

Researchers speculated that this wiping event, known as DNA demethylation, must be needed for a specific step in mammalian development, such as activating the embryo’s DNA or allowing embryonic cells to become different cell types. These processes happen at the same time in placental mammals like mice and humans, also known as eutherians, so until now it’s been impossible to unpick the precise effects of this epigenetic process.

In a study published today in Nature, the team at the Crick investigated, for the first time, epigenetic changes in embryos of a marsupial, which diverged from eutherians 160 million years ago. They focused on the opossum, which develops slower and in more discrete stages than eutherians, to outline which process DNA demethylation is needed for. 

The researchers created a map of DNA methylation in opossum eggs, sperm and embryos, finding that levels of methylation in eggs and sperm were more similar to each other than they were in eutherians.

However, they found that, unlike eutherians, opossum embryos did not undergo a full wiping event. Instead, DNA methylation was retained in the early embryo, with loss occurring much later, and DNA demethylation was largely restricted to a specific supportive tissue called the trophectoderm, which becomes the marsupial placenta.

These findings show that demethylation isn’t universally required for formation of an early mammalian embryo, because the opossum embryo develops without being fully wiped of this epigenetic mark. Instead, based on their findings, the team believe that wiping may have evolved specifically for the development of the placenta.

Bryony Leeke, former PhD student in the Sex Chromosome Biology Laboratory at the Crick, together with co-first author and Principle Laboratory Research Scientist Wazeer Varsally, said: “Removing methylation specifically in the placenta allows expression of transposons, so-called ‘jumping genes’ which help modify when and where host genes are expressed. These modifications may contribute to the placenta being one of the most rapidly evolving organs in mammals."

James Turner, Principal Group Leader of the Sex Chromosome Biology Laboratory and senior author, said: “It was a big surprise that the universal wiping seen in eutherian mammals didn’t happen in the opossum. In eutherians, the trophectoderm forms really early, so wiping the full embryonic structure might be helpful to allow any of these cells to become part of this supportive tissue.

“Working on marsupials continues to amaze and surprise us. They’re often the odd one out, but it's this characteristic that means they reveal so much about biology in the more common mammals, including humans.”

-ENDS-

For further information, contact: press@crick.ac.uk or +44 (0)20 3796 5252

Notes to Editors

Reference: Leeke, B.J. and Varsally, W. et al. (2025). Divergent DNA methylation dynamics in marsupial and eutherian embryos. Nature. 10.1038/s41586-025-08992-2.

The Francis Crick Institute is a biomedical discovery institute with the mission of understanding the fundamental biology underlying health and disease. Its work helps improve our understanding of why disease develops which promotes discoveries into new ways to prevent, diagnose and treat disease.

An independent organisation, its founding partners are the Medical Research Council (MRC), Cancer Research UK, Wellcome, UCL (University College London), Imperial College London and King’s College London.

The Crick was formed in 2015, and in 2016 it moved into a brand new state-of-the-art building in central London which brings together 1500 scientists and support staff working collaboratively across disciplines, making it the biggest biomedical research facility under a single roof in Europe.

http://crick.ac.uk/

 

New poison dart frog discovered in the Amazon's Juruá River basin is blue with copper-colored legs, and represents one of just two novel Ranitomeya species in a decade





PLOS
A remarkable new blue Ranitomeya species (Anura: Dendrobatidae) with copper metallic legs from open forests of Juruá River Basin, Amazonia 

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Adult individuals of Ranitomeya aetherea sp.

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Credit: Koch et al., 2025, PLOS One, CC-BY 4.0 (https://creativecommons.org/licenses/by/4.0/)




New poison dart frog discovered in the Amazon's Juruá River basin is blue with copper-colored legs, and represents one of just two novel Ranitomeya species in a decade

Article URLhttps://plos.io/44cYeU2

Article title: A remarkable new blue Ranitomeya species (Anura: Dendrobatidae) with copper metallic legs from open forests of Juruá River Basin, Amazonia

Author countries: Brazil, Czech Republic

Funding: This study was funded by the Fundação de Amparo à Pesquisa do Estado do Amazonas (FAPEAM Grant process n° 01.02.016301.03252/2021-67 from 007/2021 BIODIVERSA to A.P. Lima). ATM received a post-doctorate fellowship from CNPq (process n◦ 174978/2023-5) and EDK received a PhD fellowship from FAPEAM. The work of JM was financially supported by the Ministry of Culture of the Czech Republic (DKRVO 2024–2028/6.I.b, National Museum of the Czech Republic, 00023272). JSD received a fellowship AT/III from FAPEAM (process No. 01.02.016301.03252/2021-67 from 007/2021 BIODIVERSA). APLima received a (Productivity Fellowship from 013/2022 CT&I) from FAPEAM. The funders had no role in study design, data collection and analysis, decision to publish, or preparation of the manuscript.

 

Gelada monkeys understand complex "conversations" involving distress calls and prosocial comforting responses, exhibiting surprise when such vocal exchanges are manipulated to violate their expectations





PLOS
Wild gelada monkeys detect emotional and prosocial cues in vocal exchanges during aggression 

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Left: a gelada male attacks two females, who respond with screams and bared-teeth facial expressions. Right: one of the study subjects, feeding, is about to receive the audio stimulus; the experimenter (Luca Pedruzzi) remains hidden behind vegetation, with the loudspeaker concealed from the subject’s view.

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Credit: Alice Galotti and Elisabetta Palagi, CC-BY 4.0 (https://creativecommons.org/licenses/by/4.0/)





Gelada monkeys understand complex "conversations" involving distress calls and prosocial comforting responses, exhibiting surprise when such vocal exchanges are manipulated to violate their expectations

Article URLhttps://plos.io/3Gvw78V

Article title: Wild gelada monkeys detect emotional and prosocial cues in vocal exchanges during aggression

Author countries: Italy, Ethiopia, France

Funding: The research has been funded by the Leakey Foundation (Science for reconciliation: What an Ethiopian monkey tells about peace-making, grant n° S202310431) and by the following zoos and foundations (funders of BRIDGES project, UNIPI, AOO "BIO" - 0005878/2022), in alphabetic order: Dudley Zoo (UK), Fondazione ARCA (Italy), Giardino Zoologico di Pistoia (Italy), NaturZoo Rheine (Germany), Parc des Félins (France), Parco Natura Viva (Italy), Parco Zoo Falconara (Italy), Rotterdam Zoo (The Netherlands), Saint-Félicien (Canada), Wildlife Conservation Benefit (Italy), Wilhelma Zoo (Germany), Zoo de Cerza (France), Zoo de La Boissière du doré (France). Rennes Métropole and the Région Bretagne (France) covered the field expenses for the first author while the University of Pisa and University of Rennes funded student fellowships. The funders had no role in study design, data collection and analysis, decision to publish, or preparation of the manuscript.

New gel could boost coral reef restoration



The substance, applied to surfaces as a coating, improved coral larvae settlement by up to 20 times in experiments compared to untreated surfaces



University of California - San Diego

Coral Reef Ecophysiology and Engineering Lab invents new material that may boost coral reef restoration 

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UC San Diego's Daniel Wangpraseurt and Samapti Kundu monitor coral growth in an experimental aquarium at Scripps Institution of Oceanography. 

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Credit: Must credit Erik Jepsen/UC San Diego.




Coral larvae are picky about where they attach and settle down. One of the ways they decide is by “smelling” chemicals in the water that are associated with healthy reefs

Now, researchers at UC San Diego’s Scripps Institution of Oceanography and Jacobs School of Engineering have developed a gel using nano-particles that slowly release some of coral larvae’s favorite “smells.” When the researchers applied the gel, called SNAP-X, to surfaces in lab experiments it increased coral larvae settlement by up to 20 times compared to untreated surfaces. SNAP-X could help overcome a major bottleneck in reef restoration efforts at a time when climate change is challenging the health of coral habitats. The gel is applied to surfaces as a coating and releases the coral-attracting chemicals for up to a month. 

The research, published today in Trends in Biotechnology, was conducted with funding from the Defense Advanced Research Projects Agency’s Reefense program, which aimed to develop self-healing, hybrid biological and engineered reef-mimicking structures for coastal protection.

“Coral are animals, and their larvae are selective about where they are going to attach because once they do, they’re stuck there,” said Daniel Wangpraseurt, the study’s senior author and a marine biologist at Scripps with a previous appointment in UC San Diego’s Department of Chemical and Nano Engineering. “With SNAP-X, we created a material that releases chemical cues that tell coral larvae this is a good place to live.” 

Coral reefs are severely threatened by ocean warming caused by climate change. They are projected to decline by 70-90% at 1.5 degrees Celsius (2.7 degrees Fahrenheit) of warming relative to preindustrial times, and by 99% at 2°C (3.6°F). The decline of coral reefs, with their kaleidoscopic beauty and estimated $375 billion in economic value, is something Wangpraseurt’s Coral Reef Ecophysiology and Engineering Lab at Scripps is working tirelessly to prevent.

“I’m over hearing that corals are dying — I’m more interested in what we can do about it,” said Wangpraseurt. “My lab’s approach is to combine marine biology with physics and bioengineering to come up with new solutions.”

A significant hurdle for scientists working on coral reef restoration is getting coral larvae to settle on degraded reefs or to attach to human-created structures that might not “smell” like home to the larvae. For coral to reproduce, adults spawn gametes that form planktonic larvae that drift in the currents and settle on a suitable substrate if environmental conditions are favorable. 

One of the major bottlenecks in coral reef restoration is ensuring that reefs become self-sustaining and can reproduce naturally. Degraded reefs often lack suitable settlement substrates and instead of providing the chemical signals that encourage coral larvae to settle and grow, these damaged environments frequently emit deterrent cues that inhibit coral recruitment.

Scientists have long known that certain types of crusty algae, known as crustose coralline algae, release chemicals that encourage baby corals to attach to surfaces. However, translating this knowledge into practical solutions to boost coral settlement had remained elusive.

Wangpraseurt and his lab wanted to develop a substance that could deliver these chemical cues over an extended period of time in the ocean to accelerate reef recovery efforts.

“If you just throw these chemical cues in the ocean they dissipate very quickly, making it hard for coral larvae to find their source,” said Samapti Kundu, a postdoctoral researcher at Scripps who worked on the project during her time at UC San Diego’s Department of Chemical and Nano Engineering, and the study’s first author. “We needed to develop something like an extended release drug delivery system that would slowly release these settlement cues in the ocean.”

The team solved this problem by encapsulating chemical compounds extracted from crustose coralline algae in nanoparticles made of silica, the main mineral in sand. The researchers then suspended those nanoparticles in a liquid gel that would solidify like Jell-O when exposed to ultraviolet (UV) light. This combination meant the team could paint or spray the substance onto a surface and then cure it with UV light to make it stay put. 

The resulting biomaterial, SNAP-X, releases the chemicals that encourage coral larvae settlement for up to one month — long enough to give coral restoration practitioners an excellent chance of timing its application with a coral spawning event. 

In laboratory tests, SNAP-X increased coral settlement by up to six-fold compared to an untreated surface. In additional experiments that featured water flow that better simulated reef environments, larval settlement increased by up to 20 times. 

“I think this material is a breakthrough that can hopefully make a big contribution to coral restoration,” said Wangpraseurt. “Biomedical scientists have spent a lot of time developing nanomaterials as drug carriers, and here we were able to apply some of that knowledge to marine restoration. This paper highlights that if you bring together ideas from different scientific fields, you can create innovative solutions to tough problems like restoring coral reefs.”

Notably, the experiments in the study were all conducted using one species of coral — the Hawaiian stony coral species Montipora capitata. More experiments are needed to show that SNAP-X can work with other corals from other regions. However, Wangpraseurt suggested that their material could be adapted to other species or areas by loading SNAP-X with coral settlement-promoting chemicals collected from suitable  crustose coralline algae that are  locally present.

Kundu and Wangpraseurt are also working to scale up such biomaterial solutions with a startup company called Hybrid Reef Solutions

“We want these materials to be used and have a big impact. To me, this means we can’t spend all our time on research — the business side needs development as well,” said Wangpraseurt. “We have had tremendous support from Scripps Oceanography and the UC San Diego Office of Innovation and Commercialization. We are really excited to take this as far as it can go.”

In addition to Kundu and Wangpraseurt, the study was co-authored by Linda Wegley Kelly of Scripps Oceanography, Natalie Levy of Scripps Oceanography and UC San Diego, Justin Chen, Timothy Noritake, Zahra Karimi, Shaochen Chen of UC San Diego, Zachary Quinlan of Scripps Oceanography and University of Hawai‘i, Hendrikje Jorissen, Joshua Hancock, Crawford Drury of the University of Hawai’i, Simone Potenti of the University of Milan, Helena Willard of the University of Amsterdam, Luisa De Cola of the Mario Negri Institute for Pharmacological Research and the University of Milan, and consortium authors with the Rapid Resilient Reefs for Coastal Defense.

Postdoctoral researcher Samapti Kundu prepares the SNAP-X gel in the Coral Reef Ecophysiology and Engineering Lab at UC San Diego's Scripps Institution of Oceanography. 

Credit

Erik Jepsen/ UC San Diego.