Friday, October 24, 2025

 

A new tool for healthcare gives better outbreak forecasts



Pinpointing an outbreak’s peak, the approach can boost health systems’ preparedness and risk communication.



University of Texas at Austin

Improved epidemic modeling around peaks 

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Epimodulated ARIMA model learns peak structure and improves forecast performance at the peak. Simulated daily new infections for a two peak epidemic (dots) with five forecasts from both the ARIMA model (green lines) and the epimodulated ARIMA model (pink lines).

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Credit: University of Texas at Austin




During an epidemic, some of the most critical questions for healthcare decision-makers are the hardest ones to answer: When will the epidemic peak, how many people will need treatment at once and how long will that peak level of demand for care last? Timely answers can help hospital administrators, community leaders and clinics decide how to deploy staff and other resources most effectively. Unfortunately, many epidemiological forecasting models tend to struggle with accurately predicting cases and hospitalizations around peaks.

A new approach described in the journal Proceedings of the National Academy of Sciences and led by University of Texas at Austin researchers, builds a critical piece of epidemiological understanding into forecasting models to address these longstanding issues. Rather than simply extrapolating trends from the current outbreak, the approach, known as “epimodulation,” gives the models a more intuitive sense of how epidemics generally tend to evolve.

“It tells the model, in effect, ‘We expect the curve to bend as immunity builds,’ so the model can look for early signs of that slowdown while still learning from the data,” said Lauren Ancel Meyers, Cooley Centennial Professor in UT’s Department of Integrative Biology and director of epiENGAGE, a national center for excellence in forecasting and outbreak analytics. “The result is a better forecast that delivers real-time insight to hospitals and communities when it matters most.”

The team tested its approach on a wide range of models and with actual data from past epidemics of influenza and COVID-19. They found that the approach increased model accuracy by up to 55% during epidemic peaks for hospital admission forecasts, without reducing accuracy at non-peak times. Epimodulation also improved the accuracy of ensemble models, which combine multiple models into one forecast. The results suggest that this can be a powerful new tool for healthcare systems to adapt to quickly evolving epidemics.

Funding for this research was provided by the U.S. Centers for Disease Control and Prevention, the Council for State and Territorial Epidemiologists and Tito’s Handmade Vodka.

According to Meyers, this approach could be applied to many infectious diseases that spread in waves, including bird flu, Ebola, Mpox and even new pathogens that have yet to emerge. Such wave patterns often arise as immunity builds within a population, as people change their behavior, or as environmental conditions shift.

“Epidemics tend to follow recognizable patterns. They grow very quickly at first, then slow down as more people become immune or change their behavior, eventually peaking and fading,” Meyers said. “Those dynamics reflect basic epidemiological principles—how infections spread, how immunity builds, and how people respond when risk goes up.”

Most forecasting models, especially those based purely on machine learning, don’t “know” any of those epidemiological principles. They essentially look at the recent data and project the trend forward, like extending a line on a graph. They often perform well while cases are rising (or falling) but miss the turning point when growth slows or reverses. Epimodulation can help make forecasting around the peak more realistic.

The paper’s other UT authors are Emily Javan, Susan Ptak and Oluwasegun Ibrahim. Other authors are Graham Gibson at Los Alamos National Laboratory, Spencer Fox at the University of Georgia and Michael Lachmann at the Santa Fe Institute and Arizona State University.

 

Powered by mushrooms, living computers are on the rise



Neural organics lead to lower energy costs, faster calculation speeds



Ohio State University





COLUMBUS, Ohio – Fungal networks may be a promising alternative to tiny metal devices used in processing and storing digital memories and other computer data, according to a new study. 

Mushrooms have long been recognized for their extreme resilience and unique properties. Their innate abilities make them perfect specimens for bioelectronics, an emerging field that, for next-gen computing, could help develop exciting new materials. 

As one example, researchers from The Ohio State University recently discovered that common edible fungi, such as shiitake mushrooms, can be grown and trained to act as organic memristors, a type of data processor that can remember past electrical states. 

Their findings showed that these shiitake-based devices not only demonstrated similar reproducible memory effects to semiconductor-based chips but could also be used to create other types of low-cost, environmentally friendly, brain-inspired computing components.

“Being able to develop microchips that mimic actual neural activity means you don't need a lot of power for standby or when the machine isn't being used,” said John LaRocco, lead author of the study and a research scientist in psychiatry at Ohio State’s College of Medicine. “That's something that can be a huge potential computational and economic advantage.”

Fungal electronics aren’t a new concept, but they have become ideal candidates for developing sustainable computing systems, said LaRocco. This is because they minimize electrical waste by being biodegradable and cheaper to fabricate than conventional memristors and semiconductors, which often require costly rare-earth minerals and high amounts of energy from data centers. 

“Mycelium as a computing substrate has been explored before in less intuitive setups, but our work tries to push one of these memristive systems to its limits,” he said. 

The study was recently published in the journal PLOS One.

To explore the new memristors' capabilities, researchers cultured samples of shiitake and button mushrooms. Once mature, they were dehydrated to ensure long-term viability, connected to special electronic circuits, and then electrocuted at various voltages and frequencies. 

“We would connect electrical wires and probes at different points on the mushrooms because distinct parts of it have different electrical properties,” said LaRocco. “Depending on the voltage and connectivity, we were seeing different performances.”

After two months, the team discovered that when used as RAM – the computer memory that stores data – their mushroom memristor was able to switch between electrical states at up to 5,850 signals per second, with about 90% accuracy. However, performance dropped as the frequency of the electrical voltages increased, but much like an actual brain, it could be fixed by connecting more mushrooms to the circuit.  

Overall, their research details how surprisingly easy it is to program and preserve mushrooms to behave in unexpected and useful ways, said Qudsia Tahmina, co-author of the study and an associate professor in electrical and computer engineering at Ohio State. Moreover, it’s an example of how technology can advance when it relies on the natural world. 

“Society has become increasingly aware of the need to protect our environment and ensure that we preserve it for future generations,” said Tahmina.“So that could be one of the driving factors behind new bio-friendly ideas like these.”

Building on the flexibility mushrooms offer also suggests there are possibilities for scaling up fungal computing, said Tahmina. For instance, larger mushroom systems may be useful in edge computing and aerospace exploration; smaller ones in enhancing the performance of autonomous systems and wearable devices. 

Organic memristors are still in early development, but future work could optimize the production process by improving cultivation techniques and miniaturizing the devices, as viable fungal memristors would need to be far smaller than what researchers achieved in this work. 

“Everything you'd need to start exploring fungi and computing could be as small as a compost heap and some homemade electronics, or as big as a culturing factory with pre-made templates,” said LaRocco. “All of them are viable with the resources we have in front of us now.” 

Other Ohio State co-authors include Ruben Petreaca, John Simonis and Justin Hill. This study was supported by the Honda Research Institute.

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Contact: John LaRocco, John.Larocco@osumc.edu

Written by: Tatyana Woodall, Woodall.52@osu.edu.

Rivers of carbon: how land runoff and saltwater shape greenhouse gas emissions at the edge of the sea



Groundbreaking estuary study by Dr. Chuanqiao Zhou of Institute of Science Tokyo and Dr. Fei He of Nanjing Institute of Environment Sciences reveals the hidden dance between terrestrial pollution, microbes, and climate-warming gases




Biochar Editorial Office, Shenyang Agricultural University

Response of greenhouse gas emissions to synergistic effects of terrigenous organic matter input and salinity dynamics in estuary 

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Response of greenhouse gas emissions to synergistic effects of terrigenous organic matter input and salinity dynamics in estuary

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Credit: Jie Ma, Zhong Wang, Chuanqiao Zhou, Yuanyun Gao, Xiaojuan Xu, Zhihui Zhang, Minghui Yu, Fei He, Ruoyu Jia, Qingyi Luo, Qiulin Xu, Xiaoguang Xu, Tsuyoshi Kinouchi & Jianchao Liu






Now, a new study published on September 22, 2025, in the open-access journal Carbon Research has cracked part of that code. By tracing the journey of dissolved organic matter (DOM) from riverbanks to estuaries, researchers have uncovered how land-based pollution and changing salinity team up to control the release of potent greenhouse gases—carbon dioxide (CO₂), methane (CH₄), and nitrous oxide (N₂O).

The findings, led by Dr. Chuanqiao Zhou from the Department of Transdisciplinary Science and Engineering at Institute of Science Tokyo and Dr. Fei He from the Ministry of Ecology and Environment’s Nanjing Institute of Environment Sciences, offer a clearer picture of one of Earth’s most dynamic—and climate-critical—ecotones: the estuary.

The Estuary: A Climate Hotspot in Plain Sight

Estuaries are more than scenic transition zones. They are biogeochemical powerhouses, where freshwater rich in organic material collides with salty seawater, fueling complex microbial reactions that can either trap or release greenhouse gases.

But what drives these emissions? Is it the type of organic matter? The salt content? The microbes in between?

To answer this, the team studied three major seagoing rivers, analyzing the composition of dissolved organic matter (DOM) and measuring real-time greenhouse gas fluxes across salinity gradients.

The Land Delivers the Fuel—Lignin Takes Center Stage

One thing became immediately clear: the rivers are flooded with terrestrial-derived organic matter—stuff washed in from the land by rain and runoff. And the dominant player? Lignin, the tough, woody polymer that gives plants their structure.

In these rivers, lignin made up a staggering 68.2% to 75.3% of the total DOM. And as the water flowed from upstream to downstream, the proportion of lignin dropped—proof that land-based inputs are strongest near river sources and gradually diluted as the system moves toward the sea.

“This isn’t just background noise,” says Dr. Chuanqiao Zhou of Institute of Science Tokyo. “It’s a massive infusion of carbon from human-altered landscapes—agriculture, deforestation, urban runoff. And it’s feeding the microbial engines that drive greenhouse gas production.”

Microbes in the Middle: The Invisible Workforce

That organic matter doesn’t break down on its own. Enter the microbes.

The study found that the composition of DOM directly shapes the microbial community. Proteobacteria, a diverse group of bacteria known for their metabolic flexibility, dominated the scene—especially in areas rich in terrestrial DOM. These microbes feast on the incoming organic material, breaking it down and, in the process, releasing CO₂ and CH₄ as byproducts.

The result? Higher greenhouse gas emissions upstream, where terrestrial DOM is most concentrated. Average methane fluxes reached 11.5, 7.74, and 11.6 μg/m²·min across the three rivers—levels that mark these estuarine zones as active sources of climate-warming gases.

Saltwater Steps In: A Natural Brake on Emissions

But as the rivers approach the sea, something changes: salinity rises, and emissions begin to fall.

The data showed a clear negative correlation between salinity and greenhouse gas emissions, especially for nitrous oxide (NO)—a greenhouse gas nearly 300 times more potent than CO₂ over the short term.

Why? Salt appears to suppress microbial activity. The delicate balance of osmotic pressure makes it harder for certain bacteria to thrive, slowing down the decomposition of organic matter and reducing gas production.

“It’s like nature’s built-in regulator,” explains Dr. Fei He from the Nanjing Institute of Environment Sciences. “As seawater mixes in, it dampens the microbial frenzy fueled by land-based inputs. This suppression effect is crucial for modeling emissions accurately—especially in coastal zones facing sea-level rise and saltwater intrusion.”

Why This Matters: From Science to Climate Policy

These findings do more than satisfy scientific curiosity. They provide a framework for predicting greenhouse gas emissions in estuaries based on DOM sources and salinity dynamics—key variables that are shifting due to climate change, land use, and water management.

For policymakers, this means:

  • Reducing terrestrial runoff (e.g., through better land management) could directly lower estuarine GHG emissions.
  • Protecting natural salinity gradients—threatened by dams, dredging, and rising seas—is not just about biodiversity, but also about climate regulation.

A Transdisciplinary Triumph

This study is a testament to the power of collaboration across disciplines and borders.

Dr. Chuanqiao Zhou and the team at Institute of Science Tokyo brought cutting-edge transdisciplinary approaches, linking environmental engineering with climate science. Meanwhile, Dr. Fei He and colleagues at the Nanjing Institute of Environment Sciences—a key research arm of China’s Ministry of Ecology and Environment—provided deep ecological insights and field expertise critical to understanding real-world estuarine systems.

Together, they’ve built a model for how science can address complex environmental challenges at the intersection of land, water, and climate.

The Big Picture: Estuaries in the Climate Equation

Estuaries have long been overlooked in global carbon budgets. But this study shows they are far from passive. They are active reactors, transforming land-based carbon into atmospheric gases—with consequences for the entire planet.

By pinpointing the synergy between terrestrial DOM and salinity, this research helps refine climate models and strengthens the case for integrated watershed management.

So the next time you stand at the edge of a river delta, remember: beneath the surface, a vast network of molecules and microbes is shaping the climate.

 

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  • Title: Response of greenhouse gas emissions to synergistic effects of terrigenous organic matter input and salinity dynamics in estuary
  • Keywords: Dissolved organic matter; FT-ICR-MS; Coastal river; Multi-source; Greenhouse gas emissions
  • Citation: Ma, J., Wang, Z., Zhou, C. et al. Response of greenhouse gas emissions to synergistic effects of terrigenous organic matter input and salinity dynamics in estuary. Carbon Res. 4, 65 (2025). https://doi.org/10.1007/s44246-025-00235-3  

 

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About Carbon Research

The journal Carbon Research is an international multidisciplinary platform for communicating advances in fundamental and applied research on natural and engineered carbonaceous materials that are associated with ecological and environmental functions, energy generation, and global change. It is a fully Open Access (OA) journal and the Article Publishing Charges (APC) are waived until Dec 31, 2025. It is dedicated to serving as an innovative, efficient and professional platform for researchers in the field of carbon functions around the world to deliver findings from this rapidly expanding field of science. The journal is currently indexed by Scopus and Ei Compendex, and as of June 2025, the dynamic CiteScore value is 15.4.

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