Thursday, April 27, 2023

How the Amazon rainforest is likely to cope with the effect of future drought

Peer-Reviewed Publication

UNIVERSITY OF LEEDS

Tree climber 

IMAGE: TREE CLIMBER MARTIN ACOSTA TAKES SELFIE view more 

CREDIT: MARTIN ACOSTA

Note to journaliststs. There are two linked press releases below: the first describes the scientific findings. The second describes the challenges of working in the Amazon forest.

How the Amazon rainforest is likely to cope with the effect of future drought

  • New study identifies regions in the rainforest most at risk from drier conditions
  • Drought will reduce the rainforest’s ability to remove carbon from the environment

A major collaboration involving 80 scientists from Europe and South America has identified the regions of the Amazon rainforest where trees are most likely to face the greatest risk from drier conditions brought about by climate change.

Based on the analysis, the scientists predict trees in the western and southern Amazon face the greatest risk of dying.

They also warn that previous scientific investigations may have underestimated the impact of drought on the rainforest because those studies focused on the central-eastern part of the forest, which is the least vulnerable to drought.

The latest study provides the first assessment across the entire Amazon Forest of how different areas are likely to respond to a climate that could get warmer and drier, and it comes as some studies predict the rainforest will experience increased periods of drought.

Professor David Galbraith, from the University of Leeds who supervised the study, said: “The Amazon is threatened by multiple stressors, including deforestation and climate. Understanding the stress limits that these forests can withstand is a major scientific challenge. Our study provides new insights into the limits of forest resistance to one major stressor - drought.”   

Some parts of the Amazon have already seen changes in rainfall patterns. In the southern Amazon, there is evidence that the dry season has become longer, and temperatures in this region have increased more than in other parts of the Amazon. The changes in the southern Amazon are partially due to extensive deforestation.

Dr Julia Tavares, who led the study while undertaking a PhD at Leeds and is now based at Uppsala University in Sweden, said: “A lot of people think of the Amazon as one large forest.  

“But it is not. It is made up of numerous forest regions that span different climate zones, from locations that are already very dry to those that are extremely wet, and we wanted to see how these different forest ecosystems are coping so we could begin to identify regions that are at particular risk of drought and drier conditions.”  

Writing in the scientific journal Nature, the research team said their findings were removing a “...major knowledge bottleneck of how climate change will impact this critical ecosystem”.  

The paper - “Basin-wide variation in tree hydraulic safety margins predicts the carbon balance of Amazon forests” - is published today (Wednesday, April 26. When the embargo lifts, the paper can be found at:  https://www.nature.com/articles/s41586-023-05971-3).

Image taken from the top of the forest canopy in Peru

CREDIT

Photo: Francisco Diniz

Tree doctors

The research team, known as the “tree doctors” to the communities living in the forest, took measurements and samples over a year from 11 separate sites across the western, central-eastern and southern Amazon – covering Brazil, Peru and Bolivia.

The study involved data from 540 individual trees across 129 species.  

The researchers wanted to determine how resistant different tree species and forests were to drought conditions. The scientists then used the data to test whether forest vulnerability to drought could predict its ability to accumulate and store carbon taken from the atmosphere.

From the data, the research team was able to quantify how safe the trees were from drought-related death.

Findings

In the southern part of the Amazon Forest, where historically there have been declining levels of rainfall, the trees showed the greatest degree of adaptation to cope with drought.

Despite that, though, the study revealed that the trees faced the biggest risk of dying due to drought. This is likely because the region has already seen rapid climate change and disruption to rainfall patterns caused by deforestation, which had pushed trees to the limits of their ability to cope.

In contrast, the tree species in the wettest parts of the Amazon Forest showed the lowest level of adaptation to drought yet they were the safest in terms of the risks from future climate change because, so far at least, they had not been impacted by changes in rainfall. 

Equipped with this more nuanced view of how different parts of the Amazon Forest could respond to drought, the researchers warn that scientific investigations, which have tended to concentrate on the central-eastern region, where trees have shown some of the greatest adaptations to cope with drier conditions, may have underestimated how vulnerable other forest regions are to climate change. 

They say the findings of the new study should be used to help update and refine existing models on how the Amazon may be impacted by drier conditions.

Carbon storage 

According to the researchers, the Amazon Forest holds between ten and 15 percent of the carbon stored by vegetation globally, and it plays a key role in taking up carbon which would otherwise be in the atmosphere.

Modelling revealed that as plant drought mortality risk increases, the ability of the trees to store carbon would be significantly reduced. The most water stressed part of the Amazon is in the south-eastern region. Analysis reveals that the trees in this location no longer act as a large-scale carbon store. 

Professor David Galbraith said: “This study reveals how forest risk to drought varies across the Amazon Basin and provides a mechanism for predicting carbon balance at the forest stand level. Forests that are ‘safer’ from drought-induced mortality are accumulating more carbon than those that face greater risk of drought-induced mortality.

Professor Emanuel Gloor, also from the University of Leeds who co-supervised the study, added: "The pattern of resilience and risks identified among the different tree populations across the in the study will be used to build more effective and accurate climate models of the way the Amazon may change as the region responds to climate change."

The study involved an international team of researchers from Europe, Brazil, Peru and Bolivia. The work was part of the TREMOR project funded by the UK’s Natural Environment Research Council to better understand mechanisms of tree mortality in Amazon forests and Julia’s PhD was supported by CAPES (Coordination for the Improvement of Higher Education Personnel), Brazil.

END


Second Press Release

Scientists take a portable laboratory into the Amazon 

Laboratory equipment transported into the rainforest

Scientists had to transport a mobile laboratory into remote rainforest locations

Scientists had to travel to some forest locations by boat

CREDIT

Photo: Martin Gilpin

As an ecologist, Dr Julia Tavares often has to consider how to collect data from remote locations.  

But nothing had quite prepared her for the challenges she faced when she started her PhD at the University of Leeds.  

As a doctoral researcher in the School of Geography, she took on the task of organising and eventually leading an expedition into the Amazon rainforest - and to record data from the dominant trees that existed at locations ranging from Brazil, Peru and Bolivia.  

The study involved overseeing the harvesting of hundreds of tissue samples, work which had to take place in the middle of the night, all in the quest of cutting-edge science.  

The research team worked in extreme humidity and temperatures that reached 30 degrees Celsius by eight in the morning and over 35 degrees by midday. And the hot and humid conditions brought out clouds of mosquitoes. 

CAPTION

Dr Julia Tavares

CREDIT

Francisco Diniz.

Involving a collaboration of 80 scientists and support staff, the study was looking at how different tree species had adapted to drought, and how vulnerable different forest zones would be to further climate change.  

It was the first investigation into the water stress faced by trees across the entire Amazon basin and how they might cope if, as some climate models predict, the Amazon gets significantly warmer and rainfall patterns change.  

The findings of the research have been published today in the scientific journal Nature. (Wednesday, April 26. When the embargo lifts, the paper can be found at: https://www.nature.com/articles/s41586-023-05971-3). 

Tree climber Hugo Ninantay

CREDIT

Photo: Martin Gilpin

Sampling from the tree canopy 

Samples were taken from more than 540 trees. These were the dominant canopy species, with some reaching over 30 meters in height. The tissue samples were used to measure how hydrated the tress were, and this fluctuates over a 24-hour period. 

The scientists needed to measure hydration during periods of low and high-water stress. To do that, sampling was done at three in the morning - when the rainforest was in utter darkness and plants were recharging their water levels - and again at midday.  

As part of the expedition, the scientific team brought a mobile laboratory, packed in 16 flight cases, into the forest along with giant cylinders of nitrogen gas. 

Dr Tavares said: “We had a team of expert tree climbers whose job it was to use ropes and climbing gear to ascend the trees and get the samples.  

“We would survey the site the day before we intended to take the samples. Remember, we were working in a dense rainforest and some of the sampling was happening at night, so we needed to mark the trees and the branches that we wanted for the tissue samples.”  

The trees climbers used what are telescopic scissors, which can extend six or so metres, to reach out across the vegetation and harvest the branch they were after.  

Dr Carol Signori-Muller, an ecophysiologist formerly at University of Campinas, Brazil, and now with the University of Exeter, said the rainforest is a beautiful and fantastic place that took on a different character at night.  

She said: “At night it is very dark. The moonlight can be blocked out by the dense overhead vegetation. And it is very silent. 

“There is hardly any sound from the birds. All you can hear are the croaking of frogs or the movement of branches. You become attuned to the sounds around you because you need to be aware that something can suddenly appear from behind a bush.” 

During one off the daytime sampling sessions, a jaguar emerged from the undergrowth and started playing with the ropes attached to the climbing gear, in the way a cat would play with a ball of wool.  

Dr Tavares added: “The team had to stop what we were doing and keep away - and just watch the jaguar, who did end up destroying some of the climbing gear.” 

Reaching the different forest locations would involve a drive in four-by-four vehicles or by boat and would involve the scientists and support staff camping or staying in field station accommodation.  

The team wore long boots to protect themselves from the snakes that live in the rainforest.  

The results of the study will help identify those regions of the rainforest at greatest risk from climate change, enabling conservationists to target resources and policies to those areas.  

Dr Halina Soares Jancoski, who took part in the expedition while at the State University of Mato Grosso in Brazil and is now with the Environment Secretariat of the Municipality of Nova Xavantina, in the central west region of Brazil, said: “I consider this study very important because it helps us to understand how forests will behave with the effect of climate change. Especially in the Amazon - Cerrado transition areas, which are more susceptible to climate extremes than in the core areas.” 

Dr Tavares added: “At the start of my PhD, if you said to me that I would be involved in a major expedition into the Amazon and would have led a scientific collaboration into one of the most important ecological questions facing this hugely important ecosystem, I would have thought you were joking. 

“But, together with an amazing team, that is exactly what we have done.” 

END

New chemistry can extract virgin-grade materials from wind turbine blades in one process

Danish researchers have developed a chemical process that can disassemble the epoxy composite of wind turbine blades – and simultaneously extract intact glass fibres as well as one of the epoxy resin's original building blocks in a high quality.

Peer-Reviewed Publication

AARHUS UNIVERSITY

Recovery of materials 

IMAGE: RECOVERY OF BPA AND FIBRES FROM COMMERCIAL EPOXY COMPOSITES USING RU CATALYSIS view more 

CREDIT: ALEXANDER AHRENS, AARHUS UNIVERSITY

The new chemical process is not limited to wind turbine blades but works on many different so-called fibre-reinforced epoxy composites, including some materials that are reinforced with especially costly carbon fibres.

Thus, the process can contribute to establishing a potential circular economy in the wind turbine, aerospace, automotive and space industries, where these reinforced composites, due to their light weight and long durability, are used for load-bearing structures.

Being designed to last, the durability of the blades poses an environmental challenge.  Wind turbine blades mostly end up at waste landfills when they are decommissioned, because they are extremely difficult to break down.

If no solution is found, we will have accumulated 43 million tonnes of wind turbine blade waste globally by 2050.

The newly discovered process is a proof-of-concept of a recycling strategy that can be applied to the vast majority of both existing wind turbine blades and those presently in production, as well as other epoxy-based materials.

The results have just been published in the leading scientific journal Nature, and Aarhus University, together with the Danish Technological Institute, have filed a patent application for the process.

Specifically, the researchers have shown that by using a ruthenium-based catalyst and the solvents isopropanol and toluene, they can separate the epoxy matrix and release one of the epoxy polymer's original building blocks, bisphenol A (BPA), and fully intact glass fibres in a single process. 

However, the method is not immediately scalable yet, as the catalytic system is not efficient enough for industrial implementation – and ruthenium is a rare and expensive metal. Therefore, the scientists from Aarhus University are continuing their work on improving this methodology.

"Nevertheless, we see it as a significant breakthrough for the development of durable technologies that can create a circular economy for epoxy-based materials.  This is the first publication of a chemical process that can selectively disassemble an epoxy composite and isolate one of the most important building blocks of the epoxy polymer as well as the glass or carbon fibres without damaging the latter in the process," says Troels Skrydstrup, one of the lead authors of the study.

Troels Skrydstrup is a professor at the Department of Chemistry and the Interdisciplinary Nanoscience Center (iNANO) at Aarhus University.

The research is supported by the CETEC project (Circular Economy for Thermosets Epoxy Composites), which is a partnership between Vestas, Olin Corporation, the Danish Technological Institute and Aarhus University.

Precision eye therapy for dogs ready for human clinical development

Peer-Reviewed Publication

MICHIGAN STATE UNIVERSITY

April 24, 2023

MSU Research: precision eye therapy ready for human clinical development

EAST LANSING, Mich. – A successful gene therapy trialed at Michigan State University in dogs with an inherited eye disease is ready to be developed for clinical use in human patients with a rare condition called retinitis pigmentosa.

Simon Petersen-Jones, professor and Donald R. Meyers and William E. Dunlap Endowed Chair in Canine Health at the Michigan State College of Veterinary Medicine, and his collaborators have published “Development of a translatable gene augmentation therapy for CNGB1-Retinitis Pigmentosa” in the high-impact journal Molecular Therapy, a foremost publisher of gene and cell therapy research (2021 impact factor: 12.910).

Retinitis pigmentosa encompasses a group of rare genetic diseases that cause vision loss due to death of the light-sensing cells in the retina. Vision loss begins at a young age, and progresses throughout the lifespan.

“There is currently an unmet need for treatment to save the vision of patients with CNGB1-retinitis pigmentosa,” Petersen-Jones said. “This promising therapy that works so well in dogs is now sufficiently developed that the next step is to take it forward for a clinical trial in human patients.”

The Cleveland Clinic estimates that retinitis pigmentosa affects approximately 2 million people worldwide, 100,000 of whom are in the US. And currently, there is no cure, but this therapy may be able to halt vision loss in patients with this specific form of retinitis pigmentosa.

About the research

Humans and dogs share a gene — cyclic nucleotide-gated channel beta 1 (CNGB1)— that, when mutated, causes eye disease. Dogs develop a form of progressive retinal atrophy, while people develop a form of retinitis pigmentosa.

Because the gene therapy works in dogs with progressive retinal atrophy due to CNGB1 gene mutations, and because humans develop retinitis pigmentosa (the human equivalent of progressive retinal atrophy in dogs) due to CNGB1 gene mutations, the therapy is now ready to be developed to help people with CNGB1-retinitis pigmentosa.

“We are very hopeful that this therapy will show the same positive results as seen in dogs in a human clinical trial and lead to a successful FDA-approved therapy for CNGB1-retinitis pigmentosa,” says Petersen-Jones.

In the study, Petersen-Jones used an adeno-associated virus, or AAV, vector to deliver a normal copy of the CNGB1 gene under control of a novel gene promoter. The novel promoter, which was developed by Petersen-Jones’ collaborators, is a modified form of the promoter for human rhodopsin, an important gene in retinal rod cells. The novel promoter ensures that the CNGB1 introduced by the therapeutic is only active in the target cell–the rod photoreceptor.

The AAV is a serotype 5 packaged with the short rhodopsin promoter, CNGB1 gene combination (AAV5-RHO-CNGB1). The therapy is injected under the retina so that it is introduced to the target light-sensing rod cells, which require normal CNGB1 to function and survive.

The therapeutic:

  • Rescues normal function in rod cells and restores rod-mediated vision by introducing a normal working copy of CNGB1
  • Halts the accumulation of toxic amounts of cyclic guanosine monophosphate in normally functioning rods, which, if unabated, causes cell death
  • Preserves cone function, which, in untreated eyes, is lost as rod cells die
  • Preserves retinal structure by stopping photoreceptor degeneration

This study involved 20 authors that span 8 international institutions including academia and industry. Their findings establish the gene therapy’s long-term efficacy, and are the result of previous research funded by the National Institutes of Health. For more information about this research, contact Simon Petersen-Jones.

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Michigan State University has been advancing the common good with uncommon will for more than 165 years. One of the world's leading research universities, MSU pushes the boundaries of discovery to make a better, safer, healthier world for all while providing life-changing opportunities to a diverse and inclusive academic community through more than 400 programs of study in 17 degree-granting colleges.

For MSU news on the Web, go to MSUToday. Follow MSU News on Twitter at twitter.com/MSUnews

One Health surveillance in Viet Nam highlights hotspots for viral disease emergence and calls for One Health action

Bat roosting sites, guano harvesting, and pig farms, all in close proximity, coupled with a high diversity of circulating coronaviruses indicates a high risk of CoV spillover

Peer-Reviewed Publication

WILDLIFE CONSERVATION SOCIETY

Bat Guano Collection 

IMAGE: ONE HEALTH SURVEILLANCE HIGHLIGHTS CIRCULATION OF VIRUSES WITH ZOONOTIC POTENTIAL IN BATS, PIGS, AND HUMANS IN VIET NAM view more 

CREDIT: WCS VIET NAM

HA NOI, Viet Nam (April 26, 2023) – A new study led by the Wildlife Conservation Society (WCS) identified a viral hotspot in Viet Nam where bat roosting sites, bat guano harvesting, and pig farms are all in close proximity. The findings of this collaborative One Health study, described in the latest issue of the journal Viruses, have important implications for public health and wildlife conservation.

The authors say that the collection of guano – commonly used as a fertilizer – if not stopped entirely, should include the use of personal protective equipment for guano harvesters.

The research team, which consisted of experts from animal health, public health, and the environment sector, collected over 1,600 animal and human samples from bat guano harvesting sites, natural bat roosts, and pig farming operations. They then tested for an array of viruses including coronaviruses, influenza viruses, filoviruses and others.

They found significant viral diversity in bats, including CoVs closely related to ancestors of pig pathogens, at the human–animal interfaces targeted, as well as localized viral transmission among pig farms.  The zoonotic spillover potential of the bat viruses identified in this study remain mostly unknown, as these viruses have not been fully characterized and their ability to jump species barriers has not been assessed. 

Human samples were also tested to detect antibodies against eight virus groups. Limited human sampling did not detect any known zoonotic bat viruses in human communities living close to a bat cave where bat guano is harvested, but our other tests showed possible previous exposure to Marburg virus, Crimean–Congo hemorrhagic fever virus, and others.

In addition, the authors say the impact of bat guano harvesting on the conservation of bats and potential disruption of their critical role in the broader ecosystem must be assessed. Bats act as pollinators and consume pathogen-carrying arthropods and agricultural pests and play a critical role in the health of people, animals, and ecosystems.

Said co-author Hoang Bich Thuy, and WCS Viet Nam Country Program Director: “This study shows the risks of bat guano collection to the public health, and the risk of viral spillover from wildlife into livestock and ultimately humans. Surveillance and early detection of viral hotspots are keys to preventing the next pandemic.”   

This study represents one of the first attempts to implement One Health surveillance in Viet Nam which is located within a region characterized as a global hotspot for emerging infectious diseases.

One Health is an integrated, unifying approach that aims to sustainably balance and optimize the health of people, animals and ecosystems. Key to the One Health approach is a recognition that the health of people, livestock, wildlife, and the broader environment are all interconnected.

The authors point out the need to integrate wildlife expertise into future One Health surveillance planning and expand knowledge of wildlife systems (free range populations of wildlife, wildlife farming operations, and wildlife trade). Wildlife knowledge will be critical in the targeting of surveillance locations, interpretation of surveillance data, and development of interventions needed to prevent novel virus emergence as well as prepare for and respond effectively to the emergence of viruses with pandemic potential.

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WCS (Wildlife Conservation Society)

MISSION: WCS saves wildlife and wild places worldwide through science, conservation action, education, and inspiring people to value nature. To achieve our mission, WCS, based at the Bronx Zoo, harnesses the power of its Global Conservation Program in nearly 60 nations and in all the world’s oceans and its five wildlife parks in New York City, visited by 4 million people annually. WCS combines its expertise in the field, zoos, and aquarium to achieve its conservation mission. Visit: newsroom.wcs.org Follow: @WCSNewsroom. For more information: 347-840-1242Listen to the WCS Wild Audio podcast HERE.

Prehistoric poo reveals ‘waves’ of extinction in Colombia

Peer-Reviewed Publication

UNIVERSITY OF EXETER

Collecting sediment samples at Monquentiva 

IMAGE: CO-AUTHORS DR FELIPE FRANCO-GAVIRIA AND ISMAEL G. ESPINOZA COLLECTING SEDIMENT SAMPLES AT MONQUENTIVA view more 

CREDIT: J. OUGHTON 2019

Fungal spores found in dung have revealed that large animals went extinct in two “waves” in the Colombian Andes.

Spores of coprophilous fungi pass through the guts of megafauna (animals over 45kg) as part of their life cycle, so the presence of the spores in sediment samples shows large animals lived in a certain place and time.

The study, by the University of Exeter, found that large animals became locally extinct at Pantano de Monquentiva about 23,000 years ago, and again about 11,000 years ago – with major impacts on ecosystems.

The study used samples from a peat bog in Pantano de Monquentiva, located about 60 km from Bogota in the eastern cordillera. The study was the first of its kind conducted in Colombia.

With biodiversity now in crisis, the findings highlight how the disappearance of large animals could once again transform ecosystems that sustain wildlife and humans.

“We know that large animals such as elephants play a vital role in regulating ecosystems, for example by eating and trampling vegetation,” said Dr Dunia H. Urrego, of Exeter’s Global Systems Institute.

“By analysing samples of fungal spores, as well as pollen and charcoal, we were able to track the extinction of large animals, and the consequences of this extinction for plant abundance and fire activity.

“We found the Monquentiva ecosystem changed dramatically when large animals disappeared, with different plant species thriving and wildfires increasing.”

Analysis of the fungal spores does not show which large animals were present, but species known to roam Colombia in this period include the giant armadillo and the six-metre-tall giant ground sloth.

The findings show that plentiful megafauna existed in the area for thousands of years, then disappeared entirely about 23,000 years ago.

About 5,000 years later, megafauna began to live in the area again – likely at lower numbers – before another wave of extinction about 11,000 years ago reduced them almost to zero.

The cause of these local extinctions is unknown, but climate changes and hunting by humans are two possibilities. Researchers have even suggested that a meteorite strike was the cause.

“After the megafauna vanished, plant species at Monquentiva transitioned, with more woody and palatable plants (those favoured by grazing animals), and the loss of plants that depend on seed dispersal by animals,” said first author Felix Pym, a Masters by Research in Physical Geography student at the University of Exeter.

“Wildfires became more common after the megafauna extinctions – presumably because flammable plants were no longer being eaten or trampled upon.

“Overall, our findings show that this habitat was highly sensitive to the decline of its megafaunal populations.”

The paper concludes that, given the current biodiversity crisis, conservation efforts must account for the effects of local herbivore declines on the dispersal of certain plant species, on fire activity, and the potential loss of ecosystem services (the value humans gain from nature).

The paper, published in the journal Quaternary Research, is entitled: “The timing and ecological consequences of Pleistocene megafaunal decline in the eastern Andes of Colombia.”

Frailejones (Espeletia sp.) in Monquentiva, a member of the daisy family (Asteraceae) common in the Colombian páramo

CREDIT

F. Pym 2022