Friday, July 17, 2026

Human activities compromise coral health and resilience





University of Hawaii at Manoa
First author Zachary A. Quinlan taking water samples for metabolomics. 

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First author Zachary A. Quinlan taking water samples for metabolomics.

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Credit: UH Mānoa/ SOEST/ HIMB






Human activities are fundamentally altering the chemical makeup of local coral reefs, according to a study led by the University of Hawai‘i at Mānoa and published recently in Nature Communications. The research team discovered that 25 contaminants from agricultural, industrial, and pharmaceutical sources accumulated in the soft tissues of coral around Maui, Hawai‘i. Additionally, in areas impacted by human activities, the energy and nutrient availability within the coral’s tissue decreases, making them significantly less resilient to environmental stressors such as warmer or acidic waters.

“Our findings suggest that monitoring the pool of chemicals within the coral tissues, called metabolomes, can serve as a powerful tool for tracking the hidden impacts of anthropogenic disturbance on marine life,” said Zach Quinlan, lead author and research biologist at the Hawai‘i Institute of Marine Biology in the UH Mānoa School of Ocean and Earth Science and Technology.

Quinlan and an international team of researchers tested the metabolomes of 380 lobe corals (Porites lobata) and rice corals (Montipora capitata) from 16 sites off west and south Maui. They found that human activities both within the adjacent watershed and in the marine ecosystem altered the composition of the corals’ metabolomes. In areas with more ecosystem disturbance, there was increased accumulation of contaminants and a decrease of nutrient and energy reserves in the coral tissues.

“It was extremely surprising that the metabolomes of both coral species had almost identical trends,” said Quinlan. “These corals have very different life strategies, and we wouldnʻt normally expect them to accumulate contaminants the same or even necessarily respond the same to disturbances. This demonstrates how strong of a forcing these anthropogenic activities really are.”

Clues from the 2016 bleaching event

Using historical trends in coral cover from five of the sites they sampled, the team found that sites that had the most severe declines in coral cover after the 2016 bleaching event are the sites with the most impacted metabolomes. At more impacted sites, nitrogen and energy reserves were reduced, while stress chemicals were enriched.

The research team proposed two potential mechanisms by which human activities and contamination of marine environments lead to decreased coral resilience: 1) accumulation of anthropogenic molecules such as pharmaceuticals and industrial byproducts, and 2) increased pressure from anthropogenic activities requires coral to utilize portions of their nitrogen and energetic reserves.

“This response to anthropogenic pressure makes the coral less resilient to stressors,” said Quinlan. “Together, our findings suggest a direct relationship between anthropogenic disturbance, accumulation of dangerous contaminants within corals, and coral health that is consistent across species.”

Tracing contaminants through the ecosystem

The researchers propose that monitoring the metabolomes of coral or other coastal seafloor species can be used as a powerful tool to track human impacts on natural ecosystems. 

“Beyond the implications for coral health and resilience, this study demonstrates how many anthropogenic contaminants are escaping into marine ecosystems,” Megan Donahue, senior author on the paper and HIMB director. “We see increasing evidence that anthropogenic contaminants have broad cumulative impacts, undermining the resilience of coastal ecosystems.”

This study underscores the urgent need to reduce human impacts to the marine environment, to protect marine and human health. Looking ahead, Quinlan and team are searching for ways to enrich coral tissue nitrogen and energy reserves in controlled experiments to determine whether those increases lead to more resilient corals.

Additional co-authors include researchers from Woods Hole Oceanographic Institution, University of Newcastle (Australia), University of New South Wales (Australia), Bio21 Molecular Science and Biotechnology Institute (Australia), The Nature Conservancy, University of California Merced, Princeton University, James Cook University (Australia). 


Coral reef. 

Coral reef.

Credit

Tiara Stark/TNC


Olowalu coral reef, coastal shot 

Olowalu coral reef, coastal shot

Credit

Drew Sulock






Global study reveals how shipping and human activity shape bacteria in port waters




Analysis of more than 16 million DNA sequences shows that port size, wastewater discharge, geography, and maritime activity are closely associated with the structure of bacterial communities worldwide





Shenyang Agricultural University Collaborative Journals

A global synthesis of port water microbiome biogeography and anthropogenic associations 

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A global synthesis of port water microbiome biogeography and anthropogenic associations

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Credit: Baoyi Lv, Qitong Zhang, Tingxuan An, Shenglong Mei, Guolin Kan, Dong Wu & Jianhong Shi





Ports connect cities, economies, and supply chains, but they also create environments where marine ecosystems interact intensely with shipping, wastewater, and coastal development. A new global study has revealed that these pressures leave measurable signatures in the microscopic communities living in port waters.

Port microorganisms are not only essential contributors to marine nutrient cycling, but also sensitive indicators of environmental change and human influence,” said corresponding author Jianhong Shi of Shanghai Maritime University. “By examining ports across multiple continents, we were able to identify shared ecological patterns while also showing how shipping and wastewater may influence microbial diversity and potential pathogen abundance.”

The researchers conducted a large-scale synthesis of bacterial communities in port waters from 23 cities in eight countries across five continents. They analyzed 1,045 water samples containing more than 16.5 million high-quality 16S rRNA gene sequences, allowing them to compare microbial diversity, geographic distribution, ecological assembly processes, and possible sources of bacteria.

The results showed a clear distance-decay pattern. In other words, bacterial communities from ports located closer together tended to be more similar, while similarity decreased as geographic distance increased. However, this relationship was weaker in high-capacity ports, suggesting that frequent shipping activity may help transport microorganisms between distant locations, potentially through ballast water or organisms attached to ship surfaces.

Bacterial richness did not follow the familiar pattern often observed in plants and animals, where biodiversity is generally highest in tropical regions. Instead, port-water bacterial richness peaked at mid-latitudes, although latitude explained only a small portion of the overall variation.

Across the global dataset, the researchers identified 12 core bacterial genera, together accounting for nearly one-quarter of the bacterial community. The most abundant was SAR11 subclade IIIa, a widespread marine lineage involved in carbon cycling. Other core groups may contribute to the degradation of organic matter and the cycling of nitrogen and sulfur.

The study also detected 295 distinct potential pathogenic bacterial variants, representing approximately 6% of the analyzed sequences. Their abundance and composition differed substantially among regions, with African port samples showing the highest relative abundance of potential pathogens. Some pathogen-related sequences were geographically restricted. For example, sequences associated with Vibrio parahaemolyticus, a bacterium linked to seafood-borne illness, were detected only in Asian samples.

The authors emphasized that DNA-based identification indicates the presence of sequences associated with potential pathogens, rather than confirming that viable disease-causing organisms were active in every sample.

Source-tracking analysis suggested that air and human-associated sources were major contributors to port-water bacterial communities. Human excretion accounted for an estimated 26.6% of the potential bacterial sources, while air contributed 26.9%.

Wastewater discharge was associated with lower bacterial diversity and greater potential pathogen abundance. Port capacity showed the strongest individual correlation with bacterial community structure and was also positively associated with pathogen abundance. These findings indicate that both land-based pollution and maritime operations can influence port microbiomes.

The researchers found that deterministic ecological processes, including environmental selection by factors such as salinity, temperature, pH, and dissolved oxygen, played a larger role than random processes in shaping global port bacterial communities.

The findings support the use of microbial communities as sensitive indicators of port ecosystem health and highlight the need for stronger wastewater management, pathogen surveillance, and ballast-water controls. The authors also recommend standardized global sampling and more advanced methods, including metagenomics and full-length gene sequencing, to improve future identification of microorganisms and their ecological functions.

 

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Journal reference: Lv B, Zhang Q, An T, Mei S, Kan G, et al. 2026. A global synthesis of port water microbiome biogeography and anthropogenic associations. Biocontaminant 2: e008 doi: 10.48130/biocontam-0026-0005  

https://www.maxapress.com/article/doi/10.48130/biocontam-0026-0005  

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About Biocontaminant:
Biocontaminant (e-ISSN: 3070-359X) is a multidisciplinary platform dedicated to advancing fundamental and applied research on biological contaminants across diverse environments and systems. The journal serves as an innovative, efficient, and professional forum for global researchers to disseminate findings in this rapidly evolving field.

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Biochar helps earthworms cope with combined copper and glyphosate contamination



Earthworm behavior reveals that copper and a commercial glyphosate formulation can become more harmful when they occur together, while a modest biochar amendment partially restores soil habitability





Shenyang Agricultural University Collaborative Journals

Mitigating the effects of copper and commercial glyphosate formulations with biochar: insights from Eisenia fetida avoidance assays 

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Mitigating the effects of copper and commercial glyphosate formulations with biochar: insights from Eisenia fetida avoidance assays

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Credit: João Ricardo Sousa, Carolina Matos, Tiago Azevedo, Elisabete Nascimento Gonçalves, Vishnu D. Rajput, Abhishek Singh, Karen Ghazaryan, Francisco Saraiva, Tao Zhang & Rupesh Kumar Singh






Agricultural soils are often exposed to more than one chemical at a time, yet environmental risk assessments commonly examine pollutants individually. A new study shows that combined exposure to copper and a commercial glyphosate formulation caused substantially stronger stress responses in earthworms than either contaminant alone. Adding biochar to the soil significantly reduced these behavioral effects, highlighting a potentially practical strategy for managing mixed agricultural pollution.

Our findings show that contaminant mixtures can create ecological risks that may be underestimated when copper and glyphosate are assessed separately,” said senior author Rupesh Kumar Singh of the Universidade de Trás-os-Montes e Alto Douro in Portugal. “Biochar did not completely eliminate the effects, but it clearly improved soil habitability and reduced the earthworms’ response to contamination.

Copper is widely used in fungicides, particularly in vineyards, orchards, and horticultural systems. Although it is an essential micronutrient, repeated applications can cause copper to accumulate to toxic concentrations in soil. Glyphosate-based herbicides are also applied extensively in agricultural and nonagricultural environments. Because the two products may be used in the same locations and during overlapping periods, soil organisms can be exposed to both simultaneously.

To investigate this combined risk, the researchers used the earthworm Eisenia fetida, a widely recognized indicator of soil health. Earthworms contribute to decomposition, nutrient cycling, soil aggregation, and aeration, making their behavior an ecologically meaningful measure of whether soil remains suitable for life.

The team conducted a standardized 48-hour avoidance test in which earthworms could move between uncontaminated soil and soil containing different concentrations of copper, glyphosate formulation, or both. Avoidance behavior provides an early warning of chemical stress because earthworms may leave unsuitable soil before exposure causes mortality or reproductive damage.

When tested individually, both contaminants produced clear concentration-dependent responses. Glyphosate treatments caused avoidance rates of approximately 40% to 60%, while copper treatments produced avoidance ranging from 40% to 87%.

The effects became stronger when the contaminants were combined. Earthworm avoidance increased from 60% at the lowest mixture concentration to 100% at the highest concentration, indicating that the contaminated soil had become severely unsuitable as a habitat. Even moderate combined exposure produced a stronger response than the corresponding individual treatments.

The researchers suggest that interactions between copper and glyphosate may alter their mobility, persistence, or biological availability. Glyphosate can bind metal ions such as copper, while elevated copper concentrations may inhibit microorganisms involved in glyphosate degradation. Additives in commercial herbicide formulations may also contribute to toxicity.

To test a possible mitigation strategy, the team added 1% biochar by soil weight, equivalent to an agronomically realistic application rate of approximately 20 metric tons per hectare. The biochar was produced from forestry residues through pyrolysis.

Biochar reduced earthworm avoidance by 29% in one combined treatment and by 27% in the most highly contaminated treatment. Its porous structure and reactive surface groups may immobilize copper and glyphosate, reducing the fraction available to soil organisms.

The researchers emphasize that the experiments used standardized artificial soil to ensure controlled and reproducible conditions. Natural soils contain more complex mineral, organic, and microbial components that may influence contaminant behavior. Field studies, longer exposure periods, and additional measures such as reproduction and biochemical responses will therefore be needed.

Nevertheless, the results demonstrate that earthworm avoidance tests can rapidly detect risks from contaminant mixtures and that biochar may help protect the biological quality of polluted agricultural soils.

 

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Journal reference: Sousa JR, Matos C, Azevedo T, Gonçalves EN, Rajput VD, et al. 2026. Mitigating the effects of copper and commercial glyphosate formulations with biochar: insights from Eisenia fetida avoidance assays. Biochar X 2: e015 doi: 10.48130/bchax-0026-0013  

https://www.maxapress.com/article/doi/10.48130/bchax-0026-0013  

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About the Journal: 

Biochar X (e-ISSN: 3070-1686) is an open access, online-only journal aims to transcend traditional disciplinary boundaries by providing a multidisciplinary platform for the exchange of cutting-edge research in both fundamental and applied aspects of biochar. The journal is dedicated to supporting the global biochar research community by offering an innovative, efficient, and professional outlet for sharing new findings and perspectives. Its core focus lies in the discovery of novel insights and the development of emerging applications in the rapidly growing field of biochar science. 

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Hasanuddin University study identifies barriers to customary land rights recognition in Indonesia



Local politics and NGO support play a decisive role in recognizing customary land rights of indigenous communities, reveals findings from Sulawesi




Hasanuddin University

Comparing customary land rights recognition for Indonesia's indigenous communities 

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In a global collaborative study, researchers compared three districts in Sulawesi using interviews and document analysis to identify why some indigenous adat communities secured formal recognition while others did not. The approach highlights how local politics, legal procedures, and advocacy organizations influence recognition and offers practical recommendations for improving the process.

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Credit: Andi Rahmat Hidayat from Hasanuddin University, Indonesia Image source link: https://www.sciencedirect.com/science/article/pii/S0264837726001456





Across Indonesia, many indigenous communities, known locally as adat, have long sought recognition of their customary rights to forests and ancestral lands. Under President Suharto's authoritarian regime, large areas of customary land were taken away from indigenous communities and brought under state control. Although Indonesia's transition to democracy and decentralization after 1998 created new opportunities for adat communities to reclaim their ancestral lands, progress has remained slow.

In 2013, a landmark constitutional court ruling recognized that forests within customary territories were no longer state forests. However, by 2024, only 240 of the country's 1,425 adat communities (13.8%) had received formal recognition, covering just 244,195 hectares of the estimated 22.8 million hectares of potential customary forest land.

An important question still remains – why has the recognition of land rights succeeded in some communities but not in others? Now, a global study involving Andi Rahmat Hidayat, Lecturer at Hasanuddin University, Indonesia, has sought answers to this question, which remained less explored in existing literature. The findings reveal how local political conditions and legal procedures shape the recognition of customary land rights across Indonesia.

This study was made available online on April 14, 2026, and will be published in Volume 167 of Land Use Policy on August 1, 2026.

Explaining the rationale behind this study, Hidayat says, " Understanding this variation offers nuanced insights into the effects of decentralization and democratization on the ground, particularly with regard to local customary land rights struggle."

To examine this complex landscape, the study compared the experiences of “adat” communities in three districts on the island of Sulawesi—Enrekang, Sinjai, and Pasangkayu. They conducted 58 semi-structured interviews with community leaders, local activists, journalists, academics, and government officials, and reviewed government regulations, academic papers, meeting records, and online sources related to customary land rights.

Together, the interviews and document review revealed that although Indonesia's national legal framework recognizes customary land rights, obtaining formal recognition largely depends on local governments. The researchers describe this as "legal fragmentation," where communities must first prove their status as adat communities and document their customary territories before local governments will formally recognize their land rights.

The study found that communities that developed strong political connections with influential local leaders were more successful in securing formal recognition of their customary land rights. In Enrekang, adat representatives formed close ties with district leaders, helping make the recognition of adat communities a legislative priority. In contrast, communities in Sinjai and Pasangkayu struggled to achieve similar progress. Despite meeting many of the legal requirements, they lacked strong political representation and encountered less responsive local governments.

A crucial support system for these communities has been the Indigenous Peoples Alliance of the Archipelago (AMAN), Indonesia's largest indigenous advocacy organization. AMAN helped communities strengthen their land claims by documenting ancestral histories, mapping customary territories, building relationships with local officials, and navigating the legal process required for recognition.

To improve recognition of customary land rights, the researchers propose several measures which can facilitate the prospects of recognition. Elaborating further, Hidayat says, “We propose simplifying bureaucratic procedures, strengthening the capacities of local NGOs, emphasizing the importance of developing close informal ties with local leaders, and reforming the electoral system to reduce politicians' vulnerability to co-optation by extractive interests.”

By advancing the understanding of uneven land recognition patterns and offering solutions to even out these differences, the study aligns with the findings of the United Nations Office of the High Commissioner for Human Rights (OHCHR) report Land and Human Rights: Standards and Applications (2015), which states that "Land is not a mere commodity, but an essential element for the realization of many human rights." It also advances several United Nations Sustainable Development Goals (SDGs), particularly, SDG 16 (Peace, Justice and Strong Institutions) and SDG 10 (Reduced Inequalities) by emphasizing the importance of recognizing land rights, ensuring equitable access to resources, and strengthening inclusive governance systems that protect the rights of marginalized communities.

Ensuring equal access to land rights for Indonesia's adat communities is a must if these populations are to be safeguarded. The findings of this study suggest that national legal reforms alone are not enough; they must be supported by effective implementation, responsive local leadership, and stronger institutional support for adat communities.

 

Reference
DOI: https://doi.org/10.1016/j.landusepol.2026.108061

 

About Hasanuddin University, Indonesia
Hasanuddin University (Universitas Hasanuddin or Unhas) is one of Indonesia’s largest autonomous universities, located in Makassar. Established on September 10, 1956, and named after Sultan Hasanuddin of the Gowa Kingdom, the university has grown into a major center for higher education with 17 faculties, including medicine, engineering, law, agriculture, and natural sciences. Its origins date back to 1947 with an economics faculty linked to the University of Indonesia. Today, Unhas focuses on advancing science, technology, arts, and culture, with a strong emphasis on the Indonesian Maritime Continent, aiming to develop innovative and globally competitive graduates.

Learn more, here: https://www.unhas.ac.id/about/

 

About Andi Rahmat Hidayat from Hasanuddin University, Indonesia   
Andi Rahmat Hidayat is a lecturer in the Department of Public Administration at Hasanuddin University, Indonesia, and a researcher specializing in public policy and governance. His research focuses on public policy, collaborative governance, local governance, citizenship, social activism, and public sector reform. He is particularly interested in how Indonesia's democratic transition and decentralization have shaped the recognition of customary land rights for adat (indigenous) communities. Through his work, he examines the interactions between local governments and adat communities, exploring the political and institutional factors that enable or hinder the formal recognition of indigenous land rights in Indonesia.