Tuesday, June 02, 2026

 

From flat moss to forests and flowers: New discovery may explain how plants conquered land



Researchers from the University of Copenhagen have identified a previously unknown protein that may help explain how plants managed to colonize land more than 400 million years ago




University of Copenhagen

Moss during three-dimensional growth 

image: 

Images of moss during three-dimensional growth. Left: abnormal bud development in when RAK1 is not present. Right: normal bud formation.

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Credit: Photos: Laura Moody






If plants had never learned to grow in multiple directions, our world would look very different. No trees, flowers or other complex plants – and therefore no animals or humans.

New research from the University of Copenhagen now suggests that a specific protein in moss may have been crucial for this key step in plant evolution – a step that made life on land possible. Around 470 million years ago, plant cells developed the ability to divide into three dimensions and grow upwards and sideways. Until then, as aquatic organisms, they had only grown in a two-dimensional flat form, limiting how complex they could evolve.

The newly identified protein likely arose through evolution by combining two previously existing proteins into a single protein. The researchers do not yet know exactly when this fusion occurred, but it may have played a role in the early transition of plants to life on land.

“We have identified a protein that has never been seen before and that has very special properties. It helps us gain a better understanding of how land plants function,” explains one of the study’s authors, Eleazar Rodriguez, Associate Professor in Functional Genomics at the Department of Biology.

If you look at a tree today, its growth depends on fundamental biological mechanisms that emerged early in plant evolution. These include how cells divide in different directions, how cells obtain energy for growth, and how proteins are regulated within the cell.

These are the mechanisms that the researchers now provide new insight into, dating back roughly 470 million years.

“Without the ability to grow in three dimensions, the landscape would look very different. We would not see trees and shrubs grow the way they do today. Life on land would likely have remained much more limited,” says Thomas Juel Ammitsøe, postdoc and co–first author of the study.

Removing the newly discovered protein

The researchers identified the previously unknown protein, named RAK1, in a moss species. The protein is a fusion between two types of proteins already known – a signaling protein (kinase) and an acetyltransferase. When present, it has a specific effect in the moss: by influencing the cell’s energy metabolism, it enables cells to divide in multiple directions and form buds and shoots.

This became clear when the researchers compared two versions of the same moss. In one, RAK1 was present; in the other, it had been removed.

“We observed that cells in the moss lacking RAK1 did not divide properly and formed defective buds. This shows that RAK1 may have been crucial for enabling the moss to grow efficiently,” explains the study’s co–first author, assistant professor Cloe De Luxan Hernandez.

Proteins are the workers of the cell

Moss represents some of the earliest land plants that began to grow on Earth. Until now, the explanation for how moss developed the ability to grow in three dimensions has focused on gene regulation – specifically that certain genes are switched on and off at the right time.

The researchers from the University of Copenhagen now build on this explanation by showing that simply turning genes on and off is not sufficient. The newly discovered RAK1 helps coordinate the metabolic balance needed for three-dimensional growth.

The discovery of RAK1 highlights that evolution does not always invent something entirely new – sometimes it simply combines existing elements in new ways.

“Our findings suggest that the transition from flat to three-dimensional plant growth depends not only on gene regulation, but also on precise metabolic control during stem cell division and bud formation,” says Eleazar Rodriguez.

The discovery therefore provides not only new knowledge about moss, but also insight into fundamental mechanisms underlying growth in living organisms.

Like human stem cells, moss stem cells depend on tightly controlled metabolism during growth and division. Our findings suggest that RAK1 is part of this regulatory system,” concludes Eleazar Rodriguez.

 

[[ Fact box 1: Moss as an ideal model system

Mosses represent some of the earliest land plants on Earth and are thought to have evolved from algae-like ancestors that originally lived in water.

Moss is widely used in research to study plant development because of its relatively simple organization and evolutionary position as the first type of land plant.

In this study, the researchers used the model moss Physcomitrium patens, one of the most well-studied moss species.

 

Fact box 2: Difference between two-dimensional and three-dimensional growth

Moss can grow in flat structures made up of thread-like filaments, characteristic of two-dimensional growth. In this stage, cells divide in two directions, allowing the moss to spread across the surface.

When cells switch to three-dimensional growth, they begin to divide in multiple directions and form buds. These give rise to more complex structures, enabling the moss to grow upwards and form more complex organs such as leaves.

 

Fact box 3: How the researchers studied RAK1

The researchers identified a protein, RAK1, which is a fusion between a signaling protein (kinase) and an acetyl transferase.

They then compared moss with and without RAK1.

They found that moss lacking RAK1 was unable to divide effectively in multiple dimensions.

In contrast, the presence of RAK1 enabled cells to respond to signals and develop properly into three-dimensional structures.

RAK1 acts as a link between cellular signaling and intracellular chemical regulation, enabling cells to transition to three-dimensional growth.

 

Fact box 4: About the study

The results are published in the journal New Phytologist, which focuses on plant science research.

A total of 18 researchers contributed to the study.

The study was conducted as part of a broader international collaborative effort involving researchers from Austria, England, Germany and Japan.

Read the study ]]

 

Redesigning an elusive bacterial enzyme into an efficient green catalyst



Scientists engineer the CYP107J1 enzyme from Bacillus subtilis into a more practical tool for selective oxidation chemistry




Tokyo University of Science

A CYP107J1 variant that is easier to activate 

image: 

The engineered CYP107J1 enzyme is driven by hydrogen peroxide instead of NAD(P)H and does not require an electron transport chain (and therefore no redox partner proteins).

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Credit: Professor Toshiki Furuya from Tokyo University of Science, Japan





Industrial oxidation chemistry is a cornerstone of modern manufacturing, accounting for nearly one-third of all chemical industrial processes. While essential for making pharmaceuticals, dyes, and many specialty chemicals, industrial oxidation typically relies on high-temperature, high-pressure processes involving toxic oxidizing agents. This has motivated scientists to look into cytochrome P450 monooxygenases (P450s) as a compelling alternative. These enzymes, found across virtually all living organisms, catalyze highly selective oxidation reactions at room temperature and ambient pressure, and several are already in use in pharmaceutical manufacturing. Discovering and characterizing new P450s is therefore an active area of research worldwide.

Even in one of the most extensively studied bacteria in microbiology, Bacillus subtilis strain 168, one of its eight P450 enzymes (CYP107J1) has remained functionally uncharacterized. The main reason for this is that P450 enzymes do not work alone, but instead depend on redox partner proteins called reductases that activate them by transferring electrons. In B. subtilis, the genes encoding these partner proteins are not clustered alongside the P450 genes in the genome, making it challenging to identify the natural partners of CYP107J1. Without them, scientists had to rely on partners borrowed from other organisms, which led to weak enzymatic activity and difficulties in characterizing CYP107J1.

To address this, a research team led by Professor Toshiki Furuya from the Department of Applied Biological Science, Faculty of Science and Technology, Tokyo University of Science (TUS), Japan, turned to a strategy that sidesteps the redox partner problem entirely. In their study, published in Volume 19, Issue 5 of Microbial Biotechnology on May 4, 2026, they characterized CYP107J1 by re-engineering it into a new form that requires no redox partners at all. Other members of the team included second-year doctoral student Hideki Kato and Assistant Professor Takafumi Hashimoto, also from TUS. This research was conducted in collaboration with the team of Dr. Stephen Bell at the University of Adelaide.

The team first confirmed that natural CYP107J1 could oxidize 4-alkylbenzoic acids (compounds consisting of a benzene ring attached to a carbon chain) when paired with substitute redox partners in Escherichia coli cells. The catalytic activity measured was, however, quite low. Thus, the researchers then introduced two targeted amino acid changes into the enzyme’s active site, converting it into a peroxygenase driven by hydrogen peroxide (H2O2). The mutations were designed rationally rather than through trial and error, as equivalent substitutions had previously conferred peroxygenase activity on a related enzyme called CYP199A4 in research by the team of collaborator Dr. Stephen Bell. Using structural modelling, the team confirmed that the corresponding residues in CYP107J1 were positioned appropriately in the active site.

This minor modification led to 28-fold higher catalytic activity toward 4-hexylbenzoic acid compared with the original enzyme with its substitute partners, without affecting selectivity for where on the substrate it places the hydroxyl group. Unexpectedly, the engineered enzyme also converted indole into indigo, a commercially important blue dye. By simply mixing the enzyme, substrate, and H2O2, the team could produce indigo at a rate that outperformed previously reported P450 peroxygenases used for the same purpose. “The method used in this study simplified the driving mechanism of the P450 reaction itself, making it effective not only for analyzing enzymes with unknown functions but also for applying them as catalysts for synthesizing useful compounds,” says Prof. Furuya.

Notably, the two-mutation engineering approach used here offers a practical template for unlocking other ‘orphan’ P450s without needing to first identify their natural redox partners. This could expand the industrial use of engineered P450 enzymes as practical biocatalysts for manufacturing pharmaceuticals, dyes, and other valuable chemicals under mild reaction conditions. Such efforts would ultimately make industrial oxidation chemistry a more sustainable activity overall. 

The research team is currently working to further improve the catalytic activity of the modified CYP107J1 enzyme. Prof. Furuya also highlights that many other molecules of this kind remain to be carefully investigated and leveraged in practical applications. “Enzymes of the CYP107J subfamily are widely distributed among bacteria of the genus Bacillus. The findings from this study will facilitate further exploitation of their catalytic potential,” Prof. Furuya concludes.

 

***

 

References
DOI: 10.1111/1751-7915.70369

 

Molecular model and active sites of the engineered CYP107J1 variant 

This image shows a simplified diagram of the structure of the engineered CYP107J1 peroxygenase, alongside its catalytic process driven by hydrogen peroxide.

Credit

Professor Toshiki Furuya from Tokyo University of Science


A CYP107J1 variant that is easier to activate 

The engineered CYP107J1 enzyme is driven by hydrogen peroxide instead of NAD(P)H and does not require an electron transport chain (and therefore no redox partner proteins).

Credit

Professor Toshiki Furuya from Tokyo University of Science, Japan

 Image link:  https://enviromicro-journals.onlinelibrary.wiley.com/doi/10.1111/1751-7915.70369


About The Tokyo University of Science
Tokyo University of Science (TUS) is a well-known and respected university, and the largest science-specialized private research university in Japan, with four campuses in central Tokyo and its suburbs and in Hokkaido. Established in 1881, the university has continually contributed to Japan's development in science through inculcating the love for science in researchers, technicians, and educators.

With a mission of “Creating science and technology for the harmonious development of nature, human beings, and society," TUS has undertaken a wide range of research from basic to applied science. TUS has embraced a multidisciplinary approach to research and undertaken intensive study in some of today's most vital fields. TUS is a meritocracy where the best in science is recognized and nurtured. It is the only private university in Japan that has produced a Nobel Prize winner and the only private university in Asia to produce Nobel Prize winners within the natural sciences field.

Website: https://www.tus.ac.jp/en/mediarelations/

 

About Professor Toshiki Furuya from Tokyo University of Science
Dr. Toshiki Furuya is a Professor at the Faculty of Science and Technology in the Department of Applied Biological Science at Tokyo University of Science, Japan. He completed his graduation and postgraduate studies from Waseda University in Tokyo, Japan. His areas of research include applied biochemistry, microbial metabolism, enzyme catalysis, bioproduction, and bioremediation. He has published more than 45 articles in reputed journals. He has won many awards, including the 24th Excellent Paper Award by the Society of Biotechnology in 2016.

 

Funding information
The authors have no funding information to report.

 

Budget-friendly lab-grown steak with realistic texture cooked up

Peer-Reviewed Publication

The Hebrew University of Jerusalem

Alon and Jo "cooking" CNC scaffolds 

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the two first authors are examining different CNC concentrations while developing the exact method to prepare the CNC scaffolds. (2022)

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Credit: Sharon Schlesinger

A new study demonstrates that preloading plant-derived cellulose scaffolds with growth factors supports the cost-efficient proliferation and differentiation of bovine stem cells for cultivated meat. By binding these vital proteins directly to an anisotropic, directionally frozen framework instead of dispersing them in liquid media, this method achieves high-quality tissue development using up to ten times fewer expensive factors. Upon multi-week cultivation and subsequent pan-frying, the cell-bound constructs show partially similar mechanical and visual responses to traditional sirloin cuts

Link to photos: https://drive.google.com/drive/folders/16ZXniYC_3rUfr1nT-UQBgSm2Jbc3r2Yk?usp=drive_link

A team of Israeli scientists at the Hebrew University of Jerusalem has developed a novel method to significantly lower the production costs of cultivated meat. The study, co-authored by Alon Gershkoviz, Joseph Kippen and Yael Gilad, co-mentored by Prof. Oded Shoseyov and Dr. Sharon Schlesinger in collaboration with Prof. Ido Braslavaski from the Faculty of Agriculture, introduces a food-safe, cellulose-based scaffold that drastically reduces the volume of expensive growth factors required to cultivate animal cells into structured meat products like steaks.

The field of cultivated meat has long promised an eco-friendly and ethical alternative to conventional agriculture, yet the commercial viability of structured whole cuts has been limited by engineering challenges and prohibitive media expenses. Growth factors, which trigger cell multiplication and differentiation, typically account for over 95 percent of these media costs. By infusing these vital proteins directly into a specialized porous scaffold rather than continuously dissolving them throughout liquid culture media, the researchers successfully achieved comparable cell growth while using up to ten times less mass of these costly factors.

The foundational scaffold is fabricated using directional freezing techniques applied to combinations of nano and microcrystalline cellulose derivatives. This process creates highly aligned, tunnel-like microstructures that effectively mimic the natural extracellular matrix of animal muscle tissues. Bovine mesenchymal stem cells seeded onto these structured platforms demonstrated excellent adherence, long-term survival, and parallel spatial alignment as they grew along the parallel cellulose fibers.

Beyond merely hosting the stem cells, the anisotropic structure of the cellulose scaffold actively encourages the cells to transition toward muscle lineage. Over multi-week cultivation periods, the cells successfully differentiated and accumulated cytoplasmic lipids or structural muscle proteins like titin. Crucially, this biological maturation fundamentally altered the physical attributes of the constructs, increasing their stiffness and compressive strength to levels that closely approximate traditional raw sirloin cuts.

The culinary potential of the cell-laden scaffolds was further validated through standard cooking tests. When exposed to pan-frying at high temperatures, the structured constructs retained their dimensional stability and underwent characteristic browning reactions associated with the Maillard effect. Mechanical testing post-cooking revealed that the fried cultivated cuts exhibited a fibrous, tissue-like texture and a resistance to compression remarkably similar to conventional fried beef.

"Our findings demonstrate that we can radically change the economics of cellular agriculture without sacrificing tissue quality," said Dr. Sharon Schlesinger. "By pinning the growth factors directly to the scaffold, the cells get immediate access to the signals they need to thrive. This allows us to cut resource waste by an order of magnitude and brings us a substantial step closer to a scalable, commercially viable alternative to industrial meat production."

Prof. Oded Shoseyov added, "Utilizing plant-derived materials like cellulose allows us to build a highly structured, sustainable framework that naturally guides stem cells into replicating real meat architectures. Seeing the final product respond to frying with the same browning and structural density as a traditional steak confirms that this bio-engineering approach can deliver the authentic sensory experience consumers expect."

While the current findings serve as a robust proof of concept, the researchers note that future steps will involve transitioning the protocols to entirely serum-free formulations and scaling up production dynamics to meet commercial standards. Nevertheless, the blending of low-cost agricultural waste materials with innovative biochemistry marks a vital milestone for cellular agriculture in Israel and globally.

 

Opportunities and risks of routine data in medicine



International guidelines on the use of routinely collected data set new quality standards



Universitatsklinikum Bonn

International guidelines on the use of routinely collected data set new quality standards 

image: 

Prof. Enzo Lüsebrink and Dr. Sabine Hoffmann

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Credit: University Hospital Bonn (UKB) / private





The increasing availability of routinely collected health data (RCD) which is increasingly being used for research purposes, opens up numerous opportunities to answer more questions about health and disease – and to do so in less time. However, researchers often lack knowledge about how the data was generated, as well as control over how it was collected. An international research consortium has now published a groundbreaking guide on the use of RCDs, which is the first comprehensive guide of its kind. The goal is to sustainably improve the quality, validity, and transparency of studies based on such data, thereby strengthening the foundation for reliable evidence-based medicine. The study is now published in the renowned journal The BMJ.

Routine data – such as that from electronic health records, registries, or billing data – offers enormous opportunities for medical research, as it reflects large patient populations under real-world care conditions. At the same time, it presents significant methodological challenges. The newly published guidelines systematically analyze these challenges and describe key problem areas, including lack of representativeness, insufficient data quality, lack of temporal alignment between measurements and interventions, non-randomized treatment decisions, and the multitude of possible analytical approaches.

“Routine data open up enormous possibilities for investigating medical questions more quickly and broadly. At the same time, we must be aware of the methodological challenges in order to achieve valid and trustworthy results,” explains lead author and head of the Statistical Consulting Laboratory at LMU Munich, Dr. Sabine Hoffmann, regarding the motivation behind creating the guidelines for the use of RCDs.

The goal is to improve research quality

The researchers placed particular emphasis on the risk of biased results as well as on problems associated with missing and erroneous data. Furthermore, the role of modern, high- e analytical methods – particularly those involving artificial intelligence – is critically assessed. The guide demonstrates that while these methods hold great potential, they can also lead to misleading results without methodological rigor.

As a key innovation, the study presents a structured roadmap and concrete recommendations for action that researchers can use to improve the quality of their analyses. These include strategies for ensuring data quality, correctly defining time points, and reporting studies in a transparent and reproducible manner. Through these comprehensive recommendations, the guide makes a decisive contribution to improving research quality. It helps prevent misinterpretations, increase the reproducibility of studies, and sustainably strengthen trust in results derived from routine data.

Interdisciplinary Collaboration for Practical Guidance

The guidelines for the use of RCDs are the result of a unique interdisciplinary collaboration among internationally renowned statisticians, methodologists, experts in artificial intelligence, and cardiologists. Several of the contributing authors are members of the internationally recognized STRATOS initiative (STRengthening Analytical Thinking for Observational Studies), which is dedicated to improving statistical methods and their application in medical research. This work is part of a growing body of initiatives to promote high-quality evidence, including those led by institutions such as the Institute for Quality and Efficiency in Health Care (IQWiG), which emphasize the importance of methodologically robust studies for health policy decisions.

“With this guide, we are providing, for the first time, comprehensive, practical guidance that combines clinical and methodological expertise. Our goal is to sustainably improve the quality of research based on routine data and to responsibly harness its potential,” state the Director of the Department of Cardiology at the UKB, Prof. Dr. Georg Nickenig, and the Director of the Department of Cardiology at the Leipzig Heart Center, Prof. Dr. Holger Thiele. The study’s corresponding author and cardiologist at the UKB Heart Center, Prof. Dr. Dr. Enzo Lüsebrink, adds: “With its publication in The BMJ, the guideline sets a new international benchmark for the analysis of routine data. It provides researchers, clinicians, and decision-makers with a central framework and makes an important contribution to the further development of evidence-based medicine in the digital age.”

 

Trace Institute launches to build a new science of reality




Trace Research Institute





Title 

Trace Institute Launches to Build a New Science of Reality  

Subtitle

A new non-profit research institute is launching today to pursue the most fundamental question in science: what is the true nature of reality? Their results may reboot society.

Main Text

Science is good at solving small problems but struggles with large existential questions like the true nature of reality, consciousness and the origin of the universe. Spanning human history, elite researchers and intellectuals have gone deep into the liminal space where science and philosophy meet and come away empty-handed. Now, a team of researchers led by Drs. Donald Hoffman and Chetan Prakash believe they have the tools to challenge the metaphysical landscape beyond the boundaries of the known world. Armed with new mathematical models that, unlike current versions, center the conscious observer, they will attempt to derive a new science of reality that may upend outdated scientific dogma.  

The Trace Institute is launching today to develop and innovate on the theoretical work of two distinguished emeriti professors, Hoffman, a cognitive scientist from the University of California Irvine, and Prakash, a mathematician from Cal State San Bernadino, over two decades. With tech entrepreneur Gaspard Giroud, they have assembled a diverse team to build a unified mathematical theory of conscious observers, interfaces, and traces that are potentially fundamental to the physical universe. They will then apply their arsenal of AI-assisted models to seek solutions to long-standing problems in physics, neuroscience, and spirituality, and innovate new technologies beyond the limits of current models for society.  

Any unified theory of nature must consider the observer whose presence will change the observation. This theorem was formed by the great physicist Werner Heisenberg in his Uncertainty Principle that all high school students learn. But, for humans, the observer is inescapably linked to consciousness in the form of lived experience. Two other Nobel laureates, Max Planck and Erwin Schrodinger also asserted that consciousness may be fundamental to physical matter. Standing on the shoulders of these scientific giants, the Trace Institute will pursue a fast-moving research program to move from theory to reality science to technology and IP. Please download the linked white paper for the details.

Hoffman says, "The goal of the Trace Institute is to develop a coherent mathematical account of observation, and to reformulate scientific theory in light of this account." He adds, "The Trace Institute will explore a mathematical framework for science prior to spacetime and show precisely how it can generate spacetime. Our modeling work will allow more precise inquiries into the nature of science, life, consciousness, and reality."

Reference

A Science of Reality: Observers, Interfaces, and Traces. The Trace Institute White Paper. URL: https://traceinstitute.org/publications/

Trace Institute 

The Trace Institute is a non-profit research organization with a mission to build a science of reality based on mathematical modeling of conscious observers. Founder and Scientific Director Donald D. Hoffman is Professor Emeritus at the University of California-Irvine, who with colleagues developed the interface theory of perception, conscious agent theory, and the trace logic of conscious realism, among the first observer-based models of nature.

Website

https://traceinstitute.org

Contact

media@traceinstitute.org

MAGA

Enduring hardship reduces support for easing hardship for others





PNAS Nexus





Although intuition suggests that experiencing adversity will increase a person’s willingness to help others going through similar hardships, surveys show that this is not always the case. For example, immigrants who struggled through arduous naturalization processes do not necessarily support making the path to citizenship easier for others, and those who escaped poverty through hard work often oppose redistributive policies. Michelle Kim and colleagues hypothesize that this pattern is driven, at least in part, by people’s desire to protect the perceived value of their achievement, which is felt to be greater due to the hardship required. To test this idea, the authors conducted two experiments. In the first, participants were asked to solve puzzles while being exposed to irregular high-pitched sounds and received tokens that entered them into a drawing for $20. Some participants were told the tokens were an endowment; others were told they had earned the tokens by successfully completing the puzzle. Those who believed that they earned the tokens were less likely to support removing the annoying noise for future participants. In the second experiment, participants solved puzzles while listening to either an unpleasant or pleasant sound for a chance to win a prize. Those who gritted their teeth and attained a prize entry after enduring the aversive sounds valued the prize less when they learned that future participants would not have to work as hard for the same prize, compared with when they were told that future participants would have to work as hard as they did. Those who did not suffer through unpleasant noises, on the other hand, didn’t show this differential valuation, suggesting that they were not incorporating others’ hardship into their valuation of the prize’s worth. According to the authors, the social phenomenon of those who overcame hardship “pulling up the ladder” for others attempting to reach similar goals is motivated by people’s desire to protect the value of their achievement from being cheapened.