Thursday, August 26, 2021

Climate change: 

Up to 95% of ocean surface climates may disappear by 2100


Peer-Reviewed Publication

SCIENTIFIC REPORTS

Between 35.6% and 95% of 20th century ocean surface climates — defined by surface water temperature, pH and the concentration of the mineral aragonite — may disappear by 2100, depending on how greenhouse gas emissions develop in the first half of the 21st century, according to a study published in Scientific Reports. The findings also suggest that between 10.3% and 82% of the global ocean may experience surface climates that have not existed before.  

Katie Lotterhos and colleagues modelled ocean climates globally for three time periods: the early 19th century (1795–1834), the late 20th century (1965–2004) and the late 21st century (2065–2104). The authors compared these modelled climates across various locations using two emission scenarios, RCP 4.5 and RCP 8.5. Under these scenarios the volume of greenhouse gases emitted during the 21st century either peaks in 2050 followed by a slowed increase, or peaks in 2100 followed by a slowed increase, respectively.   

Through their comparisons, the authors were able to show which ocean climates from the 19th and 20th centuries may no longer be found in the 21st century (disappearance), and climates that may emerge in the 21st century which did not exist in the 18th and 20th centuries (novel climates). The authors showed that while ocean climates did not change significantly between the 19th and 20th centuries, by 2100, 10% to 82% of the ocean surface may experience new climates with higher temperatures, more acidic pH, and lower saturation of aragonite. Aragonite is a mineral which corals and other marine organisms use to form shells. Under the RCP 4.5 scenario, 35.6% of surface ocean climates may disappear by 2100, which rises to up to 95% under the RCP 8.5 scenario.  

The authors conclude that while some marine species currently keep pace with changing ocean climates by dispersing to new habitats, this may no longer be possible if existing ocean climates disappear, forcing species to either adapt rapidly to new climates or disappear. 

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Article details

Novel and disappearing climates in the global surface ocean from 1800 to 2100

DOI: 10.1038/s41598-021-94872-4

Corresponding Author:

Katie Lotterhos
Northeastern University, Boston, Massachusetts, USA
Email: k.lotterhos@northeastern.edu

Please link to the article in online versions of your report (the URL will go live after the embargo ends): https://www.nature.com/articles/s41598-021-94872-4

It’s not just SARS-CoV-2: Most respiratory viruses spread by aerosols

Conventional wisdom on viral disease transmission needs revision, international science team finds

Peer-Reviewed Publication

UNIVERSITY OF CALIFORNIA - SAN DIEGO

Cartoon panel series depicting airborne transmission of viruses 

IMAGE: CARTOON PANEL SERIES DEPICTING AIRBORNE TRANSMISSION OF VIRUSES CREATED BY NATIONAL SUN YAT-SEN UNIVERSITY, TAIWAN. FULL SERIES AVAILABLE AT HTTPS://DRIVE.GOOGLE.COM/FILE/D/1KX8FKNP__5RZRRS8VZ3PM-RFXLOWAEK7/VIEW?USP=SHARING view more 

CREDIT: NATIONAL SUN YAT-SEN UNIVERSITY, TAIWAN

SARS-CoV-2, the virus behind today’s global coronavirus pandemic, spreads primarily by inhalation of virus-laden aerosols at both short and long ranges —and a comprehensive new assessment of respiratory viruses finds that many others probably do as well. SARS-CoV, MERS-CoV, influenza, measles, and the rhinoviruses that cause the common cold can all spread via aerosols that can build up in indoor air and linger for hours, an international, interdisciplinary team of researchers has reported in a review published in Science Aug. 27.

Over the last century and at the beginning of this pandemic, it was widely believed that respiratory viruses, including SARS-CoV-2, mainly spread through droplets produced in coughs and sneezes of infected individuals or through touching contaminated surfaces. However, droplet and fomite transmission of SARS-CoV-2 fails to account for the numerous superspreading events observed during the COVID-19 pandemic, or the much higher transmission that occurs indoors versus. outdoors. Motivated by a desire to understand the factors leading to the COVID-19 pandemic, the researchers from Taiwan, the United States, and Israel sought to identify as clearly as possible how the coronavirus and other respiratory viruses spread. For example, the team reviewed numerous studies of superspreading events observed during the COVID pandemic, and found the studies consistently showed that airborne transmission is the most likely transmission route, not surface contacts or contact with large droplets. One common factor at these superspreading events was the shared air people inhaled in the same room. Many were linked to crowded locations, exposure durations of one hour or more, poor ventilation, vocalization, and lack of properly worn masks. The researchers also reviewed evidence collected from many other types of studies—air sampling, polymerase chain reaction (PCR)-based and/or cell culture studies, epidemiological analysis, laboratory and clinical studies, and modeling work—and concluded that airborne transmission is a major, or even dominant transmission pathway for most respiratory diseases, not just COVID-19.

CAPTION

Rendering of mutating virus cells

CREDIT

istock.com/wildpixel

 “Transmission through inhalation of virus-laden aerosols has been long underappreciated. It is time to revise the conventional paradigms by implementing aerosol precautions to protect the public against this transmission route”, said Chia C. Wang, director of the Aerosol Science Research Center and an aerosol physical chemist at National Sun Yat-sen University, Taiwan, who led the review.

Prevailing paradigms about respiratory disease transmission date back as much as a century, the team noted. Airborne transmission was paternalistically dismissed in the early 1900s by prominent public health figure Charles Chapin due to a concern that mentioning transmission by air would scare people into inaction and displace hygiene practices. An unsupported assumption that erroneously equated infections at close range with droplet transmission has shaped the current paradigm for controlling respiratory virus transmission. However, “this assumption neglects the fact that aerosol transmission also occurs at short distances, because the concentration of exhaled aerosols is higher when one is closer to the infected person emitting them,” said Kim Prather, director of the National Science Foundation Center for Aerosol Impacts on Chemistry of the Environment at UC San Diego’s Scripps Institution of Oceanography at UC San Diego and an aerosol chemist who co-led the review.

Respiratory aerosols are formed by expiratory activities, such as breathing, talking, singing, shouting, coughing, and sneezing. Before COVID-19, the traditional size cut-off between aerosols which float like smoke and droplets which drop had been set at 5 µm, however, 100 µm is a more appropriate size distinction. This updated size better represents the largest particles that can remain suspended in still air for more than 5 seconds (from a height of 1.5 meters), travel beyond one meter from the infected person, and be inhaled. “The physical size predominantly determines how long they can stay suspended in the air, how far they can reach, whether they are inhalable, and how deep they can enter into the respiratory tract if inhaled. “The majority of aerosols produced by respiratory activities are smaller than 5 µm, which allows them to travel deep into the bronchiolar and alveolar regions and deposit there. Studies find that viruses are more enriched in aerosols smaller than 5 µm”, said Josué Sznitman, a pulmonary physiologist of Technion, Israel.

Another distinct behavior of aerosols that should be taken into serious consideration is their capacity to be influenced by airflow and ventilation. Ensuring sufficient ventilation rates, filtration, and avoiding recirculation help reduce airborne transmission of infectious virus-laden aerosols. “Monitoring CO2 with portable meters helps verify that ventilation is sufficient, and implementing portable HEPA (high efficiency particulate air) purifiers and upper room UV disinfection systems also help reduce the concentrations of virus-laden aerosols”, added Jose-Luis Jimenez, an atmospheric aerosol chemist of the University of Colorado Boulder. On the other hand, the plexiglass barriers commonly used to block droplet spray from coughs and sneezes in indoor spaces may “impede proper ventilation and create higher exposures for some people,” said Linsey Marr of Virginia Tech, who has studied airborne transmission of pathogens for years. “They are not recommended except for brief, face-to-face transactions, but even then, masks are better because they help remove aerosols, while barriers just divert them.”

With the surge in infections caused by the Delta variant and the increasing occurrence of “COVID-19 breakthrough cases” (infections among people who have been fully vaccinated), many governments and national disease control agencies have resumed universal masking in public. Universal masking is an effective and economic way to block virus-laden aerosols, reported in the review. However, “we need to consider multiple barriers to transmission such as vaccination, masking, and ventilation. One single strategy is unlikely to be strong enough to eliminate transmission of emerging SARS-CoV-2 variants. ”, added Seema S. Lakdawala, a virologist of the University of Pittsburgh.

As the evidence for airborne transmission of SARS-CoV-2 has increased over time and become particularly strong, agencies have taken notice. In April and May 2021, the World Health Organization (WHO) and the U.S. Centers for Disease Control and Prevention (CDC) acknowledged inhalation of virus-laden aerosols as a main route in spreading COVID-19 at both short and long ranges. This means that to mitigate transmission and end this pandemic, decision makers should consider implementing aerosol precautionary measures, including universal masking with attention to mask fit, improving ventilation rates in indoor spaces, avoiding recirculation of contaminated indoor air, installation of air filtration such as HEPA purifiers that can effectively remove airborne particles, and using UV disinfection lamps. “What are traditionally called droplet precautions are not replaced wholesale, but instead are modified, expanded and deployed in a more effective manner in accordance with actual transmission mechanisms”, noted by Zeynep Tufekci, a sociologist at the University of Columbia who studies societal challenges in COVID-19 pandemic. Having the correct mental model of transmission of this disease and other respiratory diseases will also allow ordinary people to make better decisions in everyday situations and administrators and officials to create better guidelines and working and socializing environments even after the pandemic, she added.

This pandemic vividly illuminates the importance of the long underestimated airborne transmission route and the necessity of preserving people’s right to breathe clean and pathogen-free air. “What we have learnt from this pandemic also lights up the ways for us to make appropriate changes to enter the post-epidemic era,” said Wang. As addressed at the end of this review, these aerosol precautionary measures will not only protect against airborne transmission of respiratory diseases, but also improve indoor air quality and result in health benefits extending well beyond the COVID-19 pandemic.

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Growth-promoting, anti-aging retinal at the root of plant growth too

Plant roots and animals embryos rely on the same chemical for successful development


Peer-Reviewed Publication

DUKE UNIVERSITY

Bean root 

IMAGE: A GERMINATING BEAN SEEDLING GROWING LATERAL ROOTS. NOW, RESEARCHERS HAVE IDENTIFIED THE COMPOUNDS BEHIND THE PHENOMENON. view more 

CREDIT: MINDAUGAS KRIKSCIUKAS/GPHASE.

DURHAM, N.C. – What do frog eggs have in common with anti-aging creams? Their success depends on a group of chemical compounds called retinoids, which are capable of generating and re-generating tissues.

A new study in plants shows that retinoids’ tissue-generating capacities are also responsible for the appropriate development of roots. 

If you’ve ever planted a radish seed, you know that the first thing it does is develop a long vertical root. Give it a bit more time, and it will get smaller roots that run perpendicular to the plant’s stem. Over time, these lateral roots will branch repeatedly and spread out, forming a web that stabilizes and feeds the plant.

These lateral roots don’t just spring out randomly. They appear and then branch out at regular intervals along a main axis, following a rhythm. What regulates and determines their development and rhythm was not known, until now.

In a new study, appearing August 26 in the journal Science, a research team led by Alexandra Dickinson, assistant professor at the University of California, San Diego, and Philip Benfey, the Paul Kramer Distinguished Professor of Biology at Duke University, identifies the compound that plays a key role in triggering the development of plants’ lateral roots.

The research team had a good suspect: retinal, a type of retinoid, looked like it would fit the bill.

In humans, as well as all vertebrate animals, turning a fertilized egg into an embryo with a little beating heart requires that stem cells differentiate, specialize, and generate specific tissues, such as bones, blood vessels and a nervous system. This process is kickstarted and regulated by retinal. Animals can’t produce their own retinal, though, they must ingest it from plants, or from animals that eat plants.

“We know plants have the ability to produce this compound, that it’s very important for animal development, and so it was very tempting to check its role in plant development as well,” said Dickinson, who led this study as part of her postdoctoral research at Duke.

In order for plants to put retinal to good use, retinal molecules must form a tag-team with a protein inside the plant cell, in a process called protein binding.

To test if retinal was indeed behind lateral root development, Dickinson and her team treated seedlings with a dye that glows when retinal is bound by a protein inside a cell. As the seedling grew, glowing dots appeared near the tip of the main root. Soon after, a lateral root would grow from those glowing spots.

The process repeated at regular intervals as the seedling developed, showing that the growth of a lateral root was preceded by a peak in retinal binding.

To confirm their findings, the team applied retinal directly to the plants’ primary root. Seedlings that got a retinal booster developed more lateral roots than normal. 

To be extra sure, the team applied a compound that made plants incapable of producing retinal, and saw that these seedlings made very few lateral roots.

They then applied retinal directly to these seedlings’ primary root, and sure enough, lateral roots started developing where retinal had been applied.

“All the ways in which we looked at this question came back very positive,” Benfey said.

“If an embryo is starved of retinal during its development, it will have developmental defects,” Benfey said. “It’s surprisingly analogous to what happens with plants and their lateral roots.”

And the similarities don’t stop there: the cells of an animal embryo rely on special proteins to grab retinal from their surroundings. Plants produce their own retinoids, but they still need special proteins to bind them and activate developmental processes.

The research team found that the protein plants use to bind retinal is a doppelganger of the one found in animal cells. They are different, but have a similar structure and shape.

“It is pretty exciting to have found both the signal that triggers root development and the protein that binds it,” Benfey said.

Plants and vertebrate animals are very different organisms, whose evolutionary paths went their separate ways over 1,500 million years ago. Finding that both use closely related chemical compounds to generate new tissues during their development is an example of nature independently reaching similar solutions to similar problems in two very different organisms, a phenomenon called “convergent evolution.”

Retinoids have multiple medical uses, from acne cream to cancer therapy. Discovering the exact ways in which they regulate the development of plant root tissues opens a whole new set of doors.

“We've found a new pathway that gives information to cells and convinces them to build a new organ instead of doing the job that they were initially assigned,” Dickinson said. “So maybe we can take something from plants and use it to better understand what's happening in humans.”

This work was supported by the Howard Hughes Medical Institute and the US National Institutes of Health (grant MIRA 1R35GM131725), by an Arnold and Mabel Beckman Postdoctoral Fellowship to Alexandra Dickinson. The research of José R. Dinneny was supported in part by a Faculty Scholar grant from the Howard Hughes Medical Institute and the Simons Foundation. Michael Luciano and Martin Schnermann are supported by the Intramural Research Program of the National Institutes of Health (NIH), the National Cancer Institute, and the Center for Cancer Research.

CITATION: “A Plant Lipocalin Promotes Retinal-Mediated Oscillatory Lateral Root Initiation,” Alexandra J. Dickinson, Jingyuan Zhang, Michael Luciano, Guy Wachsman, Evan Sandoval, Martin Schnermann, José R. Dinneny, Philip N. Benfey. Science, 08/26/2021. DOI:10.1126/science.abf7461