Saturday, December 30, 2023

 

Unraveling the evolutionary origins of umami and sweet taste preferences

A genome-wide survey reveals a high level of diversity in how taste receptors evolved among vertebrates

Peer-Reviewed Publication

KINDAI UNIVERSITY

Phylogenetic tree and the revised classification of TAS1R members. 

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A NEW STUDY LED BY RESEARCHERS FROM KINDAI UNIVERSITY IDENTIFIED FIVE NEW GROUPS OF UMAMI AND SWEET TASTE RECEPTORS WITHIN THE TAS1R FAMILY (TAS1R 4, 5, 6, 7, AND 8) AND ALSO DIVERSITY IN TAS1R2 AND TAS1R3 GENES.

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CREDIT: HIDENORI NISHIHARA FROM KINDAI UNIVERSITY

The perception of taste is one of the most important senses and helps us identify beneficial foods and avoid harmful substances. For instance, our fondness for sweet and savory foods results from our need to consume carbohydrates and proteins. Given their importance as an evolutionary trait, researchers around the world are investigating how taste receptors originated and evolved over a period of time. Obtaining these insights into the feeding behavior of organisms can help them paint a picture of the history of life on Earth.

 

One of the important tastes in our taste palette is umami, or the savory taste, which is associated with proteins that form a vital part of the diets of many organisms. The taste receptor type 1 (T1R) detects sweet and umami tastes among mammals. This taste receptor is encoded by the TAS1R, a family of genes, including TAS1R1, TAS1R2, and TAS1R3, and comes from a common ancestor of bony vertebrates. However, this gene pattern is not observed in coelacanth and cartilaginous fishes, where 'taxonomically unplaced' TAS1R genes have been identified, suggesting an incomplete understanding of the evolutionary history of taste receptors.

Now, however, a research team led by Associate Professor Hidenori Nishihara from Kindai University and Professor Yoshiro Ishimaru from Meiji University, Japan, have identified five new, previously undiscovered groups within the TAS1R family. This discovery is a result of a genome-wide survey of jawed vertebrates including all major fish groups.

The study was published in Nature Ecology & Evolution on December 13, 2023 and included the contributions of Senior Assistant Professor Yasuka Toda from Meiji University, Professor Masataka Okabe from The Jikei University School of Medicine, Professor Shigehiro Kuraku from the National Institute of Genetics, and Project Associate Professor Shinji Okada from The University of Tokyo.

“Our study revealed that as compared to most modern vertebrates, the vertebrate ancestor possessed more T1Rs. These findings challenge the paradigm that only three T1R family members have been retained during evolution,” says Prof. Nishihara.

 

The novel taste receptor genes, named TAS1R4, TAS1R5, TAS1R6, TAS1R7, and TAS1R8 by the researchers, were categorized based on their distribution among species with a common ancestor. The researchers found TAS1R4 genes to be present in lizards, axolotl, lungfishes, coelacanth, bichir, and cartilaginous fishes, but absent in mammals, birds, crocodilians, turtles, and teleost fishes. Moreover, axolotl, lungfishes, and coelacanth were found to have TAS1R5. The researchers observed a close evolutionary relationship between TAS1R5TAS1R1, and TAS1R2, indicating a shared ancestry between these genes. The cartilaginous fishes possess TAS1R6 exclusively. Notably, the researchers found that TAS1R6 evolved from the same ancestral gene that led to TAS1R1TAS1R2, and TAS1R5 genes. While axolotl and lizards possess TAS1R7,  bichir and lungfishes possess TAS1R8. The researchers determined that these two genes originated in the common ancestor of jawed vertebrates.

In addition to these new genes, the study revealed diversity in the existing TAS1R genes. For instance, they found that TAS1R3 of bony vertebrates could be divided into TAS1R3A and TAS1R3BTAS1R3A was present in tetrapods and lungfishes, while TAS1R3B was identified in amphibians, lungfishes, coelacanths, and ray-finned fishes. Additionally, the genome survey found TAS1R2 to have diversified into two distinct groups (TAS1R2A and TAS1R2B), challenging the conventional idea that TAS1R2 forms a single gene group.

“We found that the TAS1R phylogenetic tree comprises of a total of 11 TAS1R clades, revealing an unexpected gene diversity,” adds Prof. Nishihara.

 

The findings also suggest that the first TAS1R gene appeared in jawed vertebrates around 615–473 million years ago. The gene then underwent several duplications to produce nine taste receptor genes (TAS1R1,2A, 2B, 3A, 3B, 4, 5, 7, and 8) in the common ancestor of bony vertebrates. Over time, some of these genes were lost in different lineages, with mammals and teleosts retaining only three TAS1Rs (TAS1R1TAS1R2A, and TAS1R3A in mammals).

In addition to shedding light on the evolutionary history, the findings also have practical applications. Explaining these to us, Prof. Nishihara says, “These findings make it easier for us to deduce the taste preferences of diverse vertebrates. This, in turn, can have potential applications such as the development of pet foods and attractants tailored to the preferences of fish, amphibians, and reptiles.


Evolution of the TAS1R family of genes during vertebrate evolution. 


 

Out of the shell: Taxonomic classification of a novel snail native to Japan


Three decades after its discovery, a snail species is officially named Xenassiminea nana following detailed morphological examinations


Peer-Reviewed Publication

OKAYAMA UNIVERSITY

Taxonimic classification of a novel snail species discovered in Japan 

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XENASSIMINEA NANA (TOP) IS A NOVEL, RARE, MOLLUSCAN SPECIES WITH A TRANSLUCENT, SPIRAL SHELL, DISCOVERED IN MAINLAND JAPAN. A RESEARCHER FROM OKAYAMA UNIVERSITY JAPAN DISCUSSES THE ANAMOTICAL CHARACTERISTICS AND CLASSIFIES IT AS A MEMBER OF SNAILS OF THE FAMILY ASSIMINEIDAE (BOTTOM: ANGUSTASSMINEA SP. FROM OKINAWA AS AN EXAMPLE).

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CREDIT: DR. HIROSHI FUKUDA FROM OKAYAMA UNIVERSITY IMAGE PUBLISHED IN HIS MANUSCRIPT: HTTPS://DOI.ORG/10.1080/13235818.2023.2278070 LICENSE INFORMATION IS PROVIDED HERE: HTTPS://WWW.BIODIVERSITYLIBRARY.ORG/BIBLIOGRAPHY/180084




In Japan, a peculiar gastropod species was discovered over three decades ago, gaining attention upon being labeled as 'vulnerable' or 'near threatened' in several government and local red lists. This species, referred to as Ka-wa-tare-kawa-zanshō in Japanese, remained undescribed until recent efforts sought to rectify this omission.

Dr. Hiroshi Fukuda, an Associate Professor at the Faculty of Environmental, Life, Natural Science and Technology, Okayama University, Japan, who first discovered this species, meticulously classified it through a comprehensive exploration of its anatomical characters. His research and findings were published online on November 23, 2023 in the Molluscan Research.

 “I found the new species 31 years ago when I was a fourth year University student. I began the taxonomic revision of the Assimineidae on becoming aware that the species is a member of the family despite the morphological dissimilarity,” Dr. Fukuda recounted, shedding light on the motivation behind this study.

For the classification, Dr. Fukuda examined, cataloged, and deposited snail specimens across multiple collections and museums. They were categorized based on their collection sites and preservation methods, ranging from dry specimens to those preserved in solutions such as neutral seawater formalin or ethanol.

Taxonomic analysis defined the newly discovered species as Xenassiminea nana, within the family Assimineidae. The species name "nana", derived from the Latin term "nanus" meaning dwarf, directly reflects the exceptionally small size of this species, which is the smallest among known assimineids. The species displays unique characters such as distinct omniphoric grooves, specific radular teeth, reproductive system, and a nervous system organization, placing it within the family Assimineidae despite superficial similarities to other gastropod families due to convergence. It shares certain traits with other assimineine members but distinguishes itself through a depressed shell shape and less pronounced cephalic tentacles. Its tentacular nerve's unique behavior of running parallel to the optic nerve and reaching a triangular bulge around each eye is distinct and unseen in other taxa within the family. These specific anatomical traits and unique shell features prompted the creation of a new genus Xenassiminea, segregating it as a distinct entity within Assimineidae.

Furthermore, the study presents a comprehensive anatomical examination of Xenassiminea nana. It explores the shell characters, noting its small helicoid shape that turns from transparent in youth to opaque in maturity. The creature has translucent skin, prominent tentacles, noticeable black eyes, and is capable of crawling rapidly. The study also meticulously describes the digestive system, reproductive organs in both male and female specimens, and provides insights into the central nervous system, highlighting ganglia, nerves, and connectives throughout.

Xenassiminea nana is native to the temperate zones of mainland Japan and inhabits narrow spaces under rocks or buried in gravel. Records of this species are documented from various prefectures along the Pacific coast, Japan Sea, and East China Sea coastlines of Japan. Landfilling and reclamation activities have depleted the habitat of these snails. “Actions undertaken for biodiversity conservation are not yet enough, partly because many people do not know that there are many little-known endangered species, especially minute invertebrates. This newly discovered species is a prime example of such overlooked biodiversity, offering valuable insights into the critical conditions necessary for biodiversity preservation,” notes Dr. Fukuda, emphasizing the urgent need for its conservation.

Young researchers must actively immerse themselves in morphological studies to understand the role of smaller invertebrates in marine ecosystems. Without prompt conservation efforts, smaller invertebrates may transition from being endangered to extinct, sooner than anticipated.

About Okayama University, Japan
As one of the leading universities in Japan, Okayama University aims to create and establish a new paradigm for the sustainable development of the world. Okayama University offers a wide range of academic fields, which become the basis of integrated graduate schools. This not only allows us to conduct the most advanced and up-to-date research, but also provides an enriching educational experience.
Website: https://www.okayama-u.ac.jp/index_e.html

About Dr. Hiroshi Fukuda from Okayama University, Japan
Associate Professor Dr. Fukuda is affiliated with the Faculty of Environmental, Life, Natural Science, and Technology at Okayama University. He has authored over 200 research articles on marine biodiversity and conservation. He has given the scientific names of molluscan species such as Turbo sazaeSatsuma akiratadai, and Xenassiminea nana native to Japan. Through his research, he advocates the “niku-nuki method,” a traditional Japanese technique applied while working with rare and minute mollusks. His work reflects the need to recognize and protect endangered marine species. Dr. Fukuda’s contributions to conservation through public awareness have earned him the Education Award from the Zoological Society of Japan.

 

Think tanks, soil weeks and mission objectives: SOLO holds its first annual meeting in Barcelona


Meeting Announcement

PENSOFT PUBLISHERS

Meeting photo 

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IMAGE: PARTICIPANTS INVOLVED IN AN INTERACTIVE SESSION TO IDENTIFY KNOWLEDGE GAPS

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CREDIT: @SOILS4EUROPE




Soil Health is essential for ecosystem services such as enabling the production of nutritious food, filtration of rainwater, and mitigation of effects of climate change. The SOLO project aims to create a knowledge hub for soil health research and innovation and supports the EU Soil Mission by developing Thematic Research and Innovation Roadmaps, an EU Research and Innovation (R&I) Roadmap, as well as different Key Performance Indicators for R&I.

On 5-7 December 2023, SOLO held its second consortium meeting in Barcelona, Spain, hosted by project partners LEITAT. The goal of the consortium meeting was to unite project partners, Think Tank members and other external experts and provide them with the opportunity to co-create solutions together. The meeting welcomed over 50 participants.

Day one of the meeting, held on World Soil Day, focused on the cornerstone of the project - the Think Tanks. The Think Tanks will co-develop the European Union Mission: A Soil Deal for Europe roadmaps, facilitate knowledge exchange and establish a solid connection to current and future EU and international soil health projects. Each Think Tank, each led by a different SOLO partner, corresponds to a Soil Mission objective and supports objective goals.

The Think Tank workshops continued throughout the second day of the event and included many interactive sessions aimed to identify the knowledge gaps and bottlenecks in each Think Tank by working together to find possible solutions. Project partners NIOO-KNAW and Fraunhofer led a session on the strategy for establishing the European R&I roadmap followed by an interactive session on Think Tanks cross-cutting.

The last day of the meeting explored other aspects of SOLO - such as the Soils for Europe Publishing Platform, developed by Pensoft, which will be used by the Think Tank members to create and publish different documents.

After that, the project partner University of Évora led a session which focused on the 2024 “Soil Weeks” - events that all project countries will host annually to discuss the soil mission objectives and gather feedback at a national level and support the knowledge gaps identification process

The meeting concluded with a summary of the overall outcomes of each session by the Think Tank leaders, which laid the groundwork for the years to come. The event was a great chance for project partners to meet in person and establish collaborative relationships with various stakeholders from all over Europe.

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Funded by the European Union under grant agreement No. 101091115, SOLO (Soils for Europe).

Views and opinions expressed are however those of the author(s) only and do not necessarily reflect those of the European Union or the European Commission. Neither the European Union nor the granting authority can be held responsible for them.

 

Breakthrough in hydrate-based desalination technique unveiled


Peer-Reviewed Publication

ULSAN NATIONAL INSTITUTE OF SCIENCE AND TECHNOLOGY(UNIST)

Professor Donghyuk Kim, Professor Yunseok Choi, and their research team at UNIST 

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PROFESSOR DONGHYUK KIM, PROFESSOR YUNSEOK CHOI, AND THEIR RESEARCH TEAM AT UNIST

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CREDIT: UNIST




A research team, led by Professor Yongwon Seo in the Graduate School of Carbon Neutrality at UNIST has unveiled a highly efficient method for desalinating seawater using hydrate-based desalination (HBD) technology. The breakthrough is expected to have far-reaching implications for the application of hydrate-based desalination techniques, with the ability to calculate optimal temperatures for enhanced efficiency.

Hydrate desalination technology, known for its eco-friendly freshwater production capabilities, offers a low-energy solution that can be effectively used in treating high concentrations of brine or contaminated water. By leveraging the phenomenon where impurities, including salts, are expelled during the formation of hydrates from brine or contaminated water, clean water can be obtained.

In this study, the research team experimentally measured the thermodynamic properties of cyclopentane hydrate and evaluated the efficiency of the hydrate desalination technique based on these measurements. They also proposed a novel calculation method for predicting the temperature that maximizes desalination efficiency.

“When specific conditions are met after adding cyclopentane, a colorless volatile liquid, to brine, cyclopentane hydrate, consisting of pure water, is formed,” explained Professor Seo. “We experimentally measured the thermodynamic properties of this cyclopentane hydrate to apply it to desalination processes.”

Building upon their experiments, the research team calculated the maximum water yield of cyclopentane hydrate under various conditions. The efficiency was determined based on the maximum water yield and the thermal energy required for cooling during the hydrate desalination process. A thermodynamic relational equation was developed to identify the temperature at which maximum efficiency can be achieved for each brine concentration.

For instance, when the hydrate desalination technique is applied to brine with initial salt concentrations of 3.5 wt% and 5 wt%, the relational equation calculates the energy efficiency optimum temperatures as 273.4 K and 271.5 K, respectively. The corresponding maximum water yields are 67% and 61.1%. This research provides a crucial criterion for optimizing the efficiency of real-world desalination processes.

Junghoon Mok, the first author of the study, emphasized the significance of this research, stating, “This study is expected to optimize the energy consumption in high-concentration brine treatment processes using hydrate freshwater techniques.” He added, “The proposed approach is not only applicable to hydrate-based desalination but also holds promise for freeze-type desalination technology.”

The study was conducted in collaboration with the Korea Institute of Production and Technology and received support from the Ministry of Science and ICT’s Korea Research Foundation’s basic research project, nuclear research and development project, and the Korea Energy Technology Evaluation Institute.

This research, conducted in collaboration with the Korea Institute of Industrial Technology (KITECH), has received support from the Korea Institute of Energy Technology Evaluation and Planning (KETEP), the Ministry of Trade, Industry and Energy (MOTIE), and the National Research Foundation of Korea (NRF). The paper, detailing this groundbreaking research, was published in the November 2023 issue of Water Research.

 

Figure 1. Schematic image, showing the cyclopentane (CP) HBD.

Figure 2. Schematic image, showing the heat efficiency map for HBD.

CREDIT

UNIST

Journal Reference
Junghoon Mok, Minseo Park, Wonjung Choi, et al., “Investigation of theoretical maximum water yield and efficiency-optimized temperature for cyclopentane hydrate-based desalination,” Water Res., (2023).

 SPAGYRIC  HOMEOPATHY

Angelica gigas extract inhibits acetylation of eNOS in vascular dysfunction


Peer-Reviewed Publication

IMPACT JOURNALS LLC

Figure 6 

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FIGURE 6. AGE IMPROVES ENDOTHELIAL CELL FUNCTIONS IN OXLDL-TREATED HUVECS.

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CREDIT: 2023 LEE ET AL.


“Angelica gigas Nakai (AG), a traditional medicinal herb, is garnering scientific attention for its potential in addressing a variety of health conditions.”

BUFFALO, NY- December 27, 2023 – A new research paper was published in Aging (listed by MEDLINE/PubMed as "Aging (Albany NY)" and "Aging-US" by Web of Science) Volume 15, Issue 23, entitled, “Angelica gigas extract inhibits acetylation of eNOS via IRE1α sulfonation/RIDD-SIRT1-mediated posttranslational modification in vascular dysfunction.”

Angelica gigas NAKAI (AG) is a popular traditional medicinal herb widely used to treat dyslipidemia owing to its antioxidant activity.

https://en.wikipedia.org/wiki/Angelica_gigas

Angelica gigas ... Angelica gigas, also called Korean angelica, giant angelica, purple parsnip, and dangquai, is a monocarpic biennial or short lived perennial ...


Vascular disease is intimately linked to obesity-induced metabolic syndrome, and AG extract (AGE) shows beneficial effects on obesity-associated vascular dysfunction. However, the effectiveness of AGE against obesity and its underlying mechanisms have not yet been extensively investigated. In this new study, researchers Geum-Hwa Lee, Hwa-Young Lee, Young-Je Lim, Ji-Hyun Kim, Su-Jin Jung, Eun-Soo Jung, Soo-Wan Chae, Juwon Lee, Junghyun Lim, Mohammad Mamun Ur Rashid, Kyung Hyun Min, and Han-Jung Chae from Jeonbuk National University and Jeonbuk National University Hospital supplemented 40 high fat diet (HFD) rats with 100–300 mg/kg/day of AGE to determine its efficacy in regulating vascular dysfunction. 

“[...] the primary aim of this study is to examine the inhibitory effects of AGE on dyslipidemia-associated vascular dysfunction, with a focus on its potential mechanisms of action.”

The vascular relaxation responses to acetylcholine were impaired in HFD rats, while the administration of AGE restored the diminished relaxation pattern. Endothelial dysfunction, including increased plaque area, accumulated reactive oxygen species, and decreased nitric oxide (NO) and endothelial nitric oxide synthase (eNOS) Ser1177 phosphorylation, were observed in HFD rats, whereas AGE reversed endothelial dysfunction and its associated biochemical signaling. Furthermore, AGE regulated endoplasmic reticulum (ER) stress and IRE1α sulfonation and its subsequent sirt1 RNA decay through controlling regulated IRE1α-dependent decay (RIDD) signaling, ultimately promoting NO bioavailability via the SIRT1-eNOS axis in aorta and endothelial cells.

Independently, AGE enhanced AMPK phosphorylation, additionally stimulating SIRT1 and eNOS deacetylation and its associated NO bioavailability. Decursin, a prominent constituent of AGE, exhibited a similar effect in alleviating endothelial dysfunctions. These data suggest that AGE regulates dyslipidemia-associated vascular dysfunction by controlling ROS-associated ER stress responses, especially IRE1α-RIDD/sirt1 decay and the AMPK-SIRT1 axis.

“Ultimately, this study presents clearly evidence that AGE is a promising natural product-based functional food/herbal medicine candidate for preventing or regulating hyperlipidemic cardiovascular complications.”

 

Read the full paper: DOI: https://doi.org/10.18632/aging.205343 

Corresponding Authors: Kyung Hyun Min, Han-Jung Chae

Corresponding Emails: khmin1492@jbnu.ac.krhjchae@jbnu.ac.kr 

Keywords: Angelica gigas, decursin, IRE1α, sulfonation, RIDD, SIRT1, vascular dysfunction

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About Aging:

Launched in 2009, Aging publishes papers of general interest and biological significance in all fields of aging research and age-related diseases, including cancer—and now, with a special focus on COVID-19 vulnerability as an age-dependent syndrome. Topics in Aging go beyond traditional gerontology, including, but not limited to, cellular and molecular biology, human age-related diseases, pathology in model organisms, signal transduction pathways (e.g., p53, sirtuins, and PI-3K/AKT/mTOR, among others), and approaches to modulating these signaling pathways.

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Future labor losses due to heat stress in China under climate change scenarios

Peer-Reviewed Publication

SCIENCE CHINA PRESS

The avoidable WHL due to heat stress under the 1.5 °C scenario compared with three RCP scenarios in mid-century in China. 

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A, TOTAL AVOIDABLE WHL. B, AVOIDABLE WHL PER CAPITA. WHL: WORK HOURS LOST. H:HOUR.

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CREDIT: ©SCIENCE CHINA PRESS




Climate change is the biggest global health threat in the 21st century, and the rising temperatures have undermined the health and safety of the working population, as well as caused labor losses, which are closely tied to social-economic development. Although the future temperatures increase in China has been forecasted by state-of-the-art climate change projections, to what extent the influence on labor has not been well studied. In a paper published in Science Bulletin, a Chinese research team presents evidence of future labor losses due to heat stress in China under climate change scenarios. This study was led by Cunrui Huang, a professor at the Vanke School of Public Health, Tsinghua University.

They found that climate change will exacerbate heat-related work hours lost (WHL) in China, even with a reduced working population in the future. The southern, eastern, and central provinces of China are the most affected, which is largely due to their higher temperature exposure, larger population size, and higher shares of vulnerable populations in total employment. However, limiting global warming to 1.5 °C would yield substantial gains. Compared to RCP2.6, RCP4.5 and RCP8.5, all provinces can avoid an average of 11.8%, 33.7%, and 53.9% of annual WHL if achieving the 1.5 °C target, which is equivalent to avoiding the losses of 0.1%, 0.6%, and 1.4% of annual GDP in China, respectively.

The research provides robust evidence for policymakers to understand the severity of future heat-related labor losses due to climate change in China. Stringent mitigation policies coupled with effective adaptation measures are therefore needed for protecting occupational health and work capacity in China. Each province should tailor occupational health protection measures to their circumstances. In addition, the findings are important for other developing countries with similar climate and demographic characteristics to China.

https://doi.org/10.1016/j.scib.2023.09.044

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