Tuesday, March 12, 2024

 

Vaccine monitoring crucial as SARS-CoV-2 variants continue to evolve



THE FRANCIS CRICK INSTITUTE





Researchers at the Francis Crick Institute and the National Institute for Health and Care Research Biomedical Research Centre at UCLH have highlighted the importance of continued surveillance of emerging SARS-CoV-2 variants and vaccine performance as the virus continues to evolve.

Published today as a research letter in The Lancet, their study compared the newer monovalent COVID vaccine, which specifically targets the XBB variant of Omicron (as recommended by the World Health Organisation), with older bivalent vaccines containing a mix of an Omicron variant and the original strain of COVID-19, which the UK deployed in Autumn 2023 before turning to monovalent vaccines1

The researchers found that both vaccines generated neutralising antibodies against the most recent strain of Omicron, BA.2.86. However, the new monovalent vaccine generated higher levels of antibodies against a range of other Omicron variants.

The team collected blood and nasal mucosal samples both before and after a fifth dose vaccination from 71 participants of the Legacy study, a research collaboration between the Crick and the NIHR University College London Hospitals Biomedical Research Centre. They compared the antibody levels before and after vaccination.

All 36 participants who received the bivalent vaccine and 17 who received the monovalent vaccine had boosted levels of antibodies against all variants tested, including the newest strain BA.2.86, which caused a wave of infection this winter. But those with the newer monovalent vaccine had 3.5x higher levels of antibodies against the XBB and BQ.1.1 strains after their booster vaccination.

Since the Omicron virus is highly transmissible and the virus replicates in the nose and throat, the researchers tested the levels of antibodies in the participants’ nasal cavity.

They found that the monovalent vaccine increased their ability to produce mucosal antibodies against most of the tested variants, whereas the bivalent vaccine didn’t provide a significant boost.

Neither vaccine increased neutralising antibody levels in the nasal cavity against the newest variant, BA.2.86, suggesting that current vaccines may be less likely to stop transmission or prevent asymptomatic or mild illness, while still protecting against severe disease.

This highlights the importance of careful vaccine updates and continuing to complement a vaccination programme with the development of antibody drugs that work against all variants, as some more vulnerable people don’t respond well to vaccines.

Emma Wall, Senior Clinical Research Fellow at the Crick and Consultant in Infectious Diseases at UCLH, said: “The UK’s strategy to deploy stocks of older vaccines paid off last year, as both vaccines provided equal protection against the newest strain. However, ongoing monitoring is needed, as the virus is continuing to evolve, so vaccine-induced antibodies might not work so well in the future. In the long run, vaccines that are effective against all new variants and can block COVID-19 being transmitted from person to person are needed.”

David LV Bauer, Group Leader of the RNA Virus Replication Laboratory at the Crick, said: “The situation this winter could have been different if the newly emerged BA.2.86 and JN.1 variants were substantially distinct from older Omicron variants, but fortunately this wasn’t the case.

“Most new variants arise quicker than most clinical trials can produce data. But laboratory analysis can provide a detailed picture very quickly. Continued surveillance will help us stay on top of viral evolution.”

-ENDS-

For further information, contact: press@crick.ac.uk or +44 (0)20 3796 5252

Notes to Editors

Reference: Shawe-Taylor, M and Greenwood, D. et al. (2024). Divergent performance of vaccines in the UK autumn 2023 COVID booster campaign. The Lancet. 10.1016/S0140-6736(24)00316-7.

  1. In Autumn 2023, the UK deployed stocks of ‘bivalent’ vaccines, which encode the Spike protein of the Omicron BA.5 variant that circulated in 2022, and the original 2019 strain of COVID-19, before turning to newer ‘monovalent’ vaccines, which encode the Spike protein of the XBB.1.5 Omicron variant that circulated in early 2023.

The Francis Crick Institute is a biomedical discovery institute dedicated to understanding the fundamental biology underlying health and disease. Its work is helping to understand why disease develops and to translate discoveries into new ways to prevent, diagnose and treat illnesses such as cancer, heart disease, stroke, infections, and neurodegenerative diseases.

An independent organisation, its founding partners are the Medical Research Council (MRC), Cancer Research UK, Wellcome, UCL (University College London), Imperial College London and King’s College London.

The Crick was formed in 2015, and in 2016 it moved into a brand new state-of-the-art building in central London which brings together 1500 scientists and support staff working collaboratively across disciplines, making it the biggest biomedical research facility under a single roof in Europe.

http://crick.ac.uk/http://crick.ac.uk/http://crick.ac.uk/

About UCLH

UCLH (University College London Hospitals NHS Foundation Trust) provides first-class acute and specialist services in five hospitals in Central London including the National Hospital for Neurology and Neurosurgery at Queen Square which is the largest hospital of its kind in the UK. UCLH is committed to education and research and forms part of UCLPartners which in March 2009 was officially designated as one of the UK's first academic health science centres by the Department of Health. UCLH works closely with UCL, translating research into treatments for patients. For more information visit www.uclh.nhs.uk. We are also on Facebook (UCLHNHS), Twitter (@uclh), Youtube (UCLHvideo) and Instagram (@uclh).

About the NIHR

The National Institute for Health and Care Research (NIHR) is the nation's largest funder of health and care research. The NIHR:

  • Funds, supports and delivers high quality research that benefits the NHS, public health and social care
  • Engages and involves patients, carers and the public in order to improve the reach, quality and impact of research
  • Attracts, trains and supports the best researchers to tackle the complex health and care challenges of the future
  • Invests in world-class infrastructure and a skilled delivery workforce to translate discoveries into improved treatments and services
  • Partners with other public funders, charities and industry to maximise the value of research to patients and the economy

The NIHR was established in 2006 to improve the health and wealth of the nation through research, and is funded by the Department of Health and Social Care. In addition to its national role, the NIHR supports applied health research for the direct and primary benefit of people in low- and middle-income countries, using UK aid from the UK government.

 

Scientists identify biodiversity conservation gaps in Madagascar




CHINESE ACADEMY OF SCIENCES HEADQUARTERS
Diversity hotspots, centers of phylogenetic endemism, and conservation gaps for Malagasy vascular plants 

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DIVERSITY HOTSPOTS, CENTERS OF PHYLOGENETIC ENDEMISM, AND CONSERVATION GAPS FOR MALAGASY VASCULAR PLANTS.

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CREDIT: IBCAS




Despite the importance of biodiversity and the urgency to conserve it, assessing what aspect of biodiversity requires the highest priority has proven complex, especially when conservation resources are limited. A new study published in Current Biology sheds light on this question. 

Prof. CHEN Zhiduan's team from the Institute of Botany of the Chinese Academy of Sciences (IBCAS) and international collaborators have identified the spatial heterogeneity of biodiversity hotspots and endemism centers. With this information, they have identified the conservation priority for vascular plants in Madagascar. 

Madagascar is the fourth largest island in the world and one of the most important global biodiversity hotspots. It is well known for its high level of endemic diversity, which is largely attributed to its complex geological history, geographic location, and biogeographic connections with Africa, India, Southeast Asia, and northern Australia. 

The researchers generated a new dated tree of life for the island, including an unprecedented sampling of 3,950 species (33% of all known species) and 1,621 genera (93% of all known genera) of Malagasy vascular plants. They found that most of the extant endemic genera (69%) in Madagascar originated relatively recently during the Neogene–Quaternary. 

Integrating phylogenetic and geographic distribution data, the researchers revealed an uneven distribution of taxon richness and phylogenetic diversity, with hotspots concentrated in the northern, eastern, and southeastern humid forests.  

They also evaluated endemic centers, which feature both taxonomic endemism and phylogenetic endemism. The analyses consistently supported a high concentration of paleoendemism in the humid eastern and central region, while neoendemism was found in the dry and spiny forests of western and southern Madagascar. 

Finally, the researchers identified conservation gaps in oft-ignored arid and semi-arid regions by overlaying biodiversity hotspots and centers of endemism with protected areas. These conservation gaps provide additional evidence to support the conservation of biodiversity in Madagascar in the face of climate change and increased anthropogenic pressures. 

This work was supported by the National Natural Science Foundation of China, the International Partnership Program of CAS, and the Sino-Africa Joint Research Center of CAS, etc. 

 

Beer byproduct behind Marmite could help us recycle metal waste


Scientists use spent brewer’s yeast, left over from manufacturing beer, to filter out metal from waste streams


FRONTIERS



When we recycle electronic devices we can no longer use, we expect to make the most out of the precious natural resources that went into building them. But electronic waste is notoriously difficult to recycle, because it’s hard to separate the different metals in the waste from each other. Scientists have now found a way of selectively capturing metals from a waste stream using spent brewer’s yeast, the same beer byproduct that goes into Marmite. Not only that: the yeast can be reused, making the process even more eco-friendly.

“Electronic waste is difficult to recycle because it is very heterogeneous,” said Dr Klemens Kremser of the University of Natural Resources and Life Sciences, Vienna, corresponding author of the article in Frontiers in Bioengineering and Biotechnology. “Getting the metals in solution is a first step, but the selective recovery of the metals remains a challenge. Compared to processes such as chemical precipitation, biosorption using spent brewer’s yeast presents a cheap and environmentally friendly approach.”

Love it or hate it?

Several options already exist for separating out the different component metals of electronic waste, including other biosorbents — biological materials which can be used to soak up pollution. However, they all have significant downsides. For instance, chemical precipitation produces contaminated slag, while biochar — a biosorbent which is similar to charcoal — is difficult to separate from wastewater. 

So the scientists turned to brewer’s yeast. Because leftover brewer’s yeast is a common byproduct of beer-brewing, it’s cheap and widely available. This research was supported by COMET (Competence Center for Excellent Technologies), the Austrian program for competence centers.

The scientists acquired 20 liters of spent brewer’s yeast, separated the biomass from leftover brewing residues, and dried out the biomass. Electrostatic interactions on the surface of the yeast allow metal ions to stick to that surface — a process called adsorption. Changing the pH of this solution alters the interactions, which can allow the yeast to adsorb more or different metal ions, depending on the contents of the solution and the specific pH. 

The scientists chose to test the yeast biomass against zinc, aluminum, copper, and nickel, economically important metals. The scientists tested each metal solution at a range of different pHs and temperatures, to gauge whether it was possible to increase the strength of the interactions and recover more metal. The scientists also tested the yeast against a real polymetallic waste stream.

“Using waste biomass for metal recovery is not a completely new process, but the selectivity of biosorption processes is a key factor for efficient metal recovery from polymetallic waste streams,” said Anna Sieber, PhD fellow of K1-MET, an Austrian metallurgical research center, and first author of the article. “We demonstrated high metal recovery rates from a complex metal solution using an environmentally friendly and cheap biomass. Yeast biomass is considered a safe organism, and the demonstrated reusability of the biomass makes it an economically feasible approach.”

Reduce, reuse, recycle

The scientists were able to recover more than 50% of aluminum, more than 40% of copper, and more than 70% of zinc from the test metal solutions. Over 50% of copper and over 90% of zinc were retrieved from the polymetallic waste stream they tested the yeast on. 

Changing the temperature had relatively little impact on efficiency, except for zinc, where it raised the recovery rate by 7.6%. Similarly, adjusting the pH had a limited effect on most of the metal solutions, except for aluminum, where it improved the efficiency of recovery by 16%.

“The metals can be removed from the yeast surface by acid treatment and thus could be recycled,” said Sieber. “It would be interesting to investigate potential applications for these reclaimed metals.”

The yeast itself could also be recycled without heavily impacting its ability to recover metal: the scientists were able to use it five times to recover different metals. 

However, the scientists caution that the metal recovery process needs testing with much larger studies in real-life conditions before it can be implemented on an industrial scale. 

“The metal removal process in this study was optimized for the four metals in question,” said Kremser. “The concentration of potentially interfering metal ions was very low in our starting solutions, but this would be important to consider when applying this approach to different mixed metal solutions.”

 

Most survivors of childhood cancer don't get the tests needed to detect serious long-term adverse effects


Peer-Reviewed Publication

CANADIAN MEDICAL ASSOCIATION JOURNAL





Surviving childhood cancer does not always mean a clean bill of health, as the treatments that eradicate those cancers can put adult survivors at risk of new cancers and other serious health problems. Despite the existence of surveillance guidelines that recommend screening for adult cancers and other "late effects" of cancer therapy, childhood cancer survivors (CCS) are rarely up to date for recommended tests, according to a large study published in CMAJ (Canadian Medical Association Journalhttps://www.cmaj.ca/lookup/doi/10.1503/cmaj.231358 led by researchers at The Hospital for Sick Children (SickKids) and Women's College Hospital.

As many as 80% of childhood cancer survivors will develop a serious or life-threatening effect, such as cardiomyopathy (heart disease) and colorectal and breast cancer, from treatment by age 45 years. The risk of colorectal cancer is 2–3 times higher than for the general population, and the risk of breast cancer in females who underwent chest radiation is similar to that of people with a BRCA mutation.

"Surveillance for late effects in adult survivors of childhood cancer is poor, placing many survivors at risk for preventable harm," writes Dr. Jennifer Shuldiner, scientist, Women's College Hospital, Toronto, Ontario, with coauthors.

In this study, researchers used Ontario provincial data on 3241 CCS who had been diagnosed with cancer between 1984 and 2014. They studied CCS who were at elevated risk of breast, colorectal cancer, or cardiomyopathy because of radiation treatments or specific chemotherapies. Of the total, 2806 (87%) were at risk for at least 1 of these late effects, 345 (11%) were at risk for 2 and 90 (3%) were at risk for 3 late effects. 

The North American Children's Oncology Group has developed long-term follow up guidelines (there have been 6 versions) to monitor adults who had cancer as children.

However, the number of survivors who were following the screening recommendations was low, with 13%, 6%, and 53% adherent to colorectal cancer, breast cancer, and cardiomyopathy screening recommendations, respectively. Those who were older at diagnosis were more likely to follow the cancer screening guidelines, whereas younger age at diagnosis was associated only with higher likelihood of following screening guidance for cardiomyopathy. 

A lack of awareness of the negative long-term effects of cancer treatments may underlie these low rates. Even in the case of survivors who attended specialized cancer survivor clinics, screening adherence rates were low. 

"Earlier studies found that a lack of knowledge about late effects risks and surveillance recommendations among survivors, family physicians, and specialists are substantial barriers to adherence," write the authors.

Screening recommendations need to address barriers to completing screening to ensure that CCS continue to lead healthy lives as adults. 

"The challenge of ensuring that CCS receive the risk-adapted health care and surveillance testing they need to maximize their long-term health and quality of life is an area of intense focus," adds Dr. Paul Nathan, director of the AfterCare Program and oncologist in the Division of Haematology/Oncology at SickKids. "Building on these findings, we will be launching a province-wide study to determine if periodic surveillance reminders for CCS and their family doctors will improve completion of these potentially life-saving tests."

The findings demonstrate a need to support patients and primary care clinicians to improve adherence to surveillance guidelines among CCS. The authors note this responsibility must be shared between the cancer care systems, particularly the provincial pediatric cancer survivor network, and the patients themselves, through advocacy and other survivor support groups.

CANADIAN, EH

Going top shelf with AI to better track hockey data


Waterloo researchers get an assist from AI in identifying hockey players with greater accuracy and speed



UNIVERSITY OF WATERLOO

A frame of an NHL broadcast video clip 

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A FRAME OF A NATIONAL HOCKEY LEAGUE BROADCAST VIDEO CLIP.

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CREDIT: STATHLETES




Researchers from the University of Waterloo got a valuable assist from artificial intelligence (AI) tools to help capture and analyze data from professional hockey games faster and more accurately than ever before, with big implications for the business of sports. 

The growing field of hockey analytics currently relies on the manual analysis of video footage from games. Professional hockey teams across the sport, notably in the National Hockey League (NHL), make important decisions regarding players’ careers based on that information. 

“The goal of our research is to interpret a hockey game through video more effectively and efficiently than a human,” said Dr. David Clausi, a professor in Waterloo’s Department of Systems Design Engineering. “One person cannot possibly document everything happening in a game.”

Hockey players move fast in a non-linear fashion, dynamically skating across the ice in short shifts. Apart from numbers and last names on jerseys that are not always visible to the camera, uniforms aren’t a robust tool to identify players — particularly at the fast-paced speed hockey is known for. This makes manually tracking and analyzing each player during a game very difficult and prone to human error. 

The AI tool developed by Clausi, Dr. John Zelek, a professor in Waterloo’s Department of Systems Design Engineering, research assistant professor Yuhao Chen, and a team of graduate students use deep learning techniques to automate and improve player tracking analysis.

The research was undertaken in partnership with Stathletes, an Ontario-based professional hockey performance data and analytics company. Working through NHL broadcast video clips frame-by-frame, the research team manually annotated the teams, the players and the players’ movements across the ice. They ran this data through a deep learning neural network to teach the system how to watch a game, compile information and produce accurate analyses and predictions.

When tested, the system’s algorithms delivered high rates of accuracy. It scored 94.5 per cent for tracking players correctly, 97 per cent for identifying teams and 83 per cent for identifying individual players. 

The research team is working to refine their prototype, but Stathletes is already using the system to annotate video footage of hockey games. The potential for commercialization goes beyond hockey. By retraining the system’s components, it can be applied to other team sports such as soccer or field hockey. 

“Our system can generate data for multiple purposes,” Zelek said. “Coaches can use it to craft winning game strategies, team scouts can hunt for players, and statisticians can identify ways to give teams an extra edge on the rink or field. It really has the potential to transform the business of sport.” 

More information about this work can be found in the research paper, “Player tracking and identification in ice hockey”, published recently in the journal Expert Systems With Applications.

 

Harnessing nature's shield: enhancing sun protection with lignin nanoparticles in cosmetics



Peer-Reviewed Publication

KEAI COMMUNICATIONS CO., LTD.

THE MAJOR MECHANISMS INFLUENCING THE UV SHIELDING PERFORMANCE OF LNPS 

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THE MAJOR MECHANISMS INFLUENCING THE UV SHIELDING PERFORMANCE OF LNPS

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CREDIT: ZHICHENG JIANG, ET AL.,




Lignin nanoparticles (LNPs) have emerged as promising candidates for enhancing sun protection in cosmetics, offering superior UV-blocking capabilities compared to soluble lignin oligomers. However, the effects of the chemical structures of constituting lignin oligomers in LNPs and the particle size distribution of LNPs were rarely investigated. Besides, the raw materials used in these works were mainly technical lignin, whose structures significantly changed during the extraction process, making them unsuitable for studying the structural effect of UV-blocking. 

In a study published in the KeAi journal Carbon Resources Conversion, a group of researchers from China investigated the interactions between LNPs' chemical structures and particle size distributions, shedding light on key factors influencing their effectiveness in boosting Sun Protection Factors (SPF) in sunscreens.

"Upon preparation into nanoparticles, lignin can synergistically enhance the UV shielding effect of composite materials when combined with other anti-UV agents, such as commercial sunscreens,” explains co-corresponding author Zhicheng Jiang from the College of Biomass Science and Engineering at Sichuan University. “When incorporated LNPs into sunscreens, they exhibit varied morphologies and exert distinct UV-blocking capabilities; however, modulating this UV shielding capacity is not straightforward, as it involves various factors including structure, particle size, and concentration, among others, affecting the shielding performance of the mixed sunscreen formulations post-LNPs incorporation.”

The researchers found that compact LNPs with conjugating C=O and β-O-4 linkages, as well as the presence of the syringyl unit rich in the methoxyl group in the structures, were beneficial in boosting the UV resistance of the sunscreens.

“In sunscreen formulations, the simultaneous inclusion of large and small LNPs results in a state of disorder, which allows some particles to fill the gaps between them and adjacent particles, leading to a more compact LNP shield,” says Jiang. “Consequently, this enhances the UV-blocking capability of the mixture, rendering it significantly higher than sunscreen formulations containing LNPs with a uniform size distribution at the same concentration.”

Tianyu Liang, lead author of the study, adds, "In the past, exploring the UV shielding mechanism of LNPs and consciously regulating them was a daunting task. This suggests that we can now identify effective approaches to intentionally modify their UV-blocking capacity, whether by altering the chemical structure of LNPs or regulating the distribution of LNP particle sizes. Furthermore, the study suggests that LNPs hold promise as natural-based materials for UV protection in sunscreen formulations and other cosmetic applications.”

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Contact the author: Zhicheng Jiang, College of Biomass Science and Engineering, National Engineering Laboratory for Clean Technology of Leather Manufacture, Sichuan University, Chengdu, China, zhichengjiang@scu.edu.cn

The publisher KeAi was established by Elsevier and China Science Publishing & Media Ltd to unfold quality research globally. In 2013, our focus shifted to open access publishing. We now proudly publish more than 100 world-class, open access, English language journals, spanning all scientific disciplines. Many of these are titles we publish in partnership with prestigious societies and academic institutions, such as the National Natural Science Foundation of China (NSFC).

LAMISTAD Project


Researchers from the Universitat Politècnica de València participate in the international team promoting the installation of a synchrotron in the Greater Caribbean


Reports and Proceedings

UNIVERSITAT POLITÈCNICA DE VALÈNCIA

Researchers from the Universitat Politècnica de València participate in the international team promoting the installation of a synchrotron in the Greater Caribbean 

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JUAN ÁNGEL SANS & PEDRO FERNÁNDEZ DE CÓRDOBA

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CREDIT: UPV




"The project we are working on is called LAMISTAD (Latin American International Synchrotron for Technology, Analysis, and Development) and aims to make the Wider Caribbean Light Source a reality. In the world of science, large facilities not only pave the way for revolutionary discoveries but also contribute to the development of high capacities and equality between regions: where they are built, there are opportunities for employment, improvement of skills and progress in key infrastructures," points out Pedro Fernández de Córdoba, researcher at the Research Institute for Pure and Applied Mathematics and professor at the School of Industrial Engineering-UPV.

Among these vast facilities, synchrotrons stand out for their great scientific and industrial potential. They are essential in fields such as condensed matter physics, the study of materials, the development of new drugs and vaccines, and the characterisation of soils and biological processes.

However, access to these infrastructures is uneven worldwide. Low- and middle-income countries, particularly in the Greater Caribbean and Africa, need help to use these cutting-edge scientific tools. "We are developing the LAMISTAD project precisely to try to reduce this gap and fully exploit the scientific potential of these regions," adds Juan Angel Sans, a researcher at the Research Institute of Design for Manufacturing and Automated Production and full professor at the School of Aerospace Engineering and Industrial Design -UPV (ETSIADI).

The work of Pedro Fernández de Córdoba and Juan Ángel Sans is focused on the technical part of the project, as well as on the promotion of communication actions; among other things, they are part of the team that is preparing a proposal that will soon be submitted to UNESCO to obtain support for this project.

"The road to the construction of the Greater Caribbean Light Source will not be easy, but its realisation could represent a significant step towards equity in access to science, technology and regional development. Making this vision a reality will require strong support from the scientific community, policymakers, and international organisations focused on developing science and technology," adds Pedro Fernández de Córdoba.

New Latin American synchrotron linked to Africa

There is already a synchrotron in Latin America, at Campinas in Brazil. The infrastructure promoted by LAMISTAD would complement and make it possible to address problems closer to the area for studies in agriculture, archaeology or cultural heritage.

In addition, the LAMISTAD project is creating synergies with the African initiative to launch the African Light Source, which aims to create a pan-African synchrotron facility. "The foundations are being laid for a link between Africa and Latin America that will boost these facilities in both parts of the world," adds Juan Angel Sans.

Along with the UPV researchers and professors, the article is signed by Víctor M. Castaño from UNAM and Galileo Violini, director emeritus of the International Physics Centre of Bogota.