Monday, September 29, 2025

 

AI system learns from many types of scientific information and runs experiments to discover new materials



The new “CRESt” platform could help find solutions to real-world energy problems that have plagued the materials science and engineering community for decades.



Massachusetts Institute of Technology






Machine-learning models can speed up the discovery of new materials by making predictions and suggesting experiments. But most models today only consider a few specific types of data or variables. Compare that with human scientists, who work in a collaborative environment and consider experimental results, the broader scientific literature, imaging and structural analysis, personal experience or intuition, and input from colleagues and peer reviewers.

Now, MIT researchers have developed a method for optimizing materials recipes and planning experiments that incorporates information from diverse sources like insights from the literature, chemical compositions, microstructural images, and more. The approach is part of a new platform, named Copilot for Real-world Experimental Scientists (CRESt), that also uses robotic equipment for high-throughput materials testing, the results of which are fed back into large multimodal models to further optimize materials recipes.

Human researchers can converse with the system in natural language, with no coding required, and the system makes its own observations and hypotheses along the way. Cameras and visual language models also allow the system to monitor experiments, detect issues, and suggest corrections.

“In the field of AI for science, the key is designing new experiments,” says Ju Li, School of Engineering Carl Richard Soderberg Professor of Power Engineering. “We use multimodal feedback — for example information from previous literature on how palladium behaved in fuel cells at this temperature, and human feedback — to complement experimental data and design new experiments. We also use robots to synthesize and characterize the material’s structure and to test performance.”

The system is described in a paper published in Nature. The researchers used CRESt to explore more than 900 chemistries and conduct 3,500 electrochemical tests, leading to the discovery of a catalyst material that delivered record power density in a fuel cell that runs on formate salt to produce electricity.

Joining Li on the paper as first authors are PhD student Zhen Zhang, Zhichu Ren PhD ’24, PhD student Chia-Wei Hsu, and postdoc Weibin Chen. Their coauthors are MIT Assistant Professor Iwnetim Abate; Associate Professor Pulkit Agrawal; JR East Professor of Engineering Yang Shao-Horn; MIT.nano researcher Aubrey Penn; Zhang-Wei Hong PhD ’25, Hongbin Xu PhD ’25; Daniel Zheng PhD ’25; MIT graduate students Shuhan Miao and Hugh Smith; MIT postdocs Yimeng Huang, Weiyin Chen, Yungsheng Tian, Yifan Gao, and Yaoshen Niu; former MIT postdoc Sipei Li; and collaborators including Chi-Feng Lee, Yu-Cheng Shao, Hsiao-Tsu Wang, and Ying-Rui Lu.

A smarter system

Materials science experiments can be time-consuming and expensive. They require researchers to carefully design workflows, make new material, and run a series of tests and analysis to understand what happened. Those results are then used to decide how to improve the material.

To improve the process, some researchers have turned to a machine-learning strategy known as active learning to make efficient use of previous experimental data points and explore or exploit those data. When paired with a statistical technique known as Bayesian optimization (BO), active learning has helped researchers identify new materials for things like batteries and advanced semiconductors.

“Bayesian optimization is like Netflix recommending the next movie to watch based on your viewing history, except instead it recommends the next experiment to do,” Li explains. “But basic Bayesian optimization is too simplistic. It uses a boxed-in design space, so if I say I’m going to use platinum, palladium, and iron, it only changes the ratio of those elements in this small space. But real materials have a lot more dependencies, and BO often gets lost.”

Most active learning approaches also rely on single data streams that don’t capture everything that goes on in an experiment. To equip computational systems with more human-like knowledge, while still taking advantage of the speed and control of automated systems, Li and his collaborators built CRESt. 

CRESt’s robotic equipment includes a liquid-handling robot, a carbothermal shock system to rapidly synthesize materials, an automated electrochemical workstation for testing, characterization equipment including automated electron microscopy and optical microscopy, and auxiliary devices such as pumps and gas valves, which can also be remotely controlled.  Many processing parameters can also be tuned.

With the user interface, researchers can chat with CRESt and tell it to use active learning to find promising materials recipes for different projects. CRESt can include up to 20 precursor molecules and substrates into its recipe. To guide material designs, CRESt’s models search through scientific papers for descriptions of elements or precursor molecules that might be useful. When human researchers tell CRESt to pursue new recipes, it kicks off a robotic symphony of sample preparation, characterization, and testing. The researcher can also ask CRESt to perform image analysis from scanning electron microscopy imaging, X-ray diffraction, and other sources.

Information from those processes is used to train the active learning models, which use both literature knowledge and current experimental results to suggest further experiments and accelerate materials discovery.

“For each recipe we use previous literature text or databases, and it creates these huge representations of every recipe based on the previous knowledge base before even doing the experiment,” says Li. “We perform principal component analysis in this knowledge embedding space to get a reduced search space that captures most of the performance variability. Then we use Bayesian optimization in this reduced space to design the new experiment. After the new experiment, we feed newly acquired multimodal experimental data and human feedback into a large language model to augment the knowledgebase and redefine the reduced search space, which gives us a big boost in active learning efficiency.”

Materials science experiments can also face reproducibility challenges. To address the problem, CRESt monitors its experiments with cameras, looking for potential problems and suggesting solutions via text and voice to human researchers.

The researchers used CRESt to develop an electrode material for an advanced type of high-density fuel cell known as a direct formate fuel cell. After exploring more than 900 chemistries over three months, CRESt discovered a catalyst material made from eight elements that achieved a 9.3-fold improvement in power density per dollar over pure palladium, an expensive precious metal. In further tests, CRESTs material was used to deliver a record power density to a working direct formate fuel cell even though the cell contained just one-fourth of the precious metals of previous devices.

The results show the potential for CRESt to find solutions to real-world energy problems that have plagued the materials science and engineering community for decades.

“A significant challenge for fuel-cell catalysts is the use of precious metal,” says Zhang. “For fuel cells, researchers have used various precious metals like palladium and platinum. We used a multielement catalyst that also incorporates many other cheap elements to create the optimal coordination environment for catalytic activity and resistance to poisoning species such as carbon monoxide and adsorbed hydrogen atom. People have been searching low-cost options for many years. This system greatly accelerated our search for these catalysts.”

A helpful assistant

Early on, poor reproducibility emerged as a major problem that limited the researchers’ ability to perform their new active learning technique on experimental datasets. Material properties can be influenced by the way the precursors are mixed and processed, and any number of problems can subtly alter experimental conditions, requiring careful inspection to correct.

To partially automate the process, the researchers coupled computer vision and vision language models with domain knowledge from the scientific literature, which allowed the system to hypothesize sources of irreproducibility and propose solutions. For example, the models can notice when there’s a millimeter-sized deviation in a sample’s shape or when a pipette moves something out of place. The researchers incorporated some of the model’s suggestions, leading to improved consistency, suggesting the models already make good experimental assistants.

The researchers noted that humans still performed most of the debugging in their experiments.

“CREST is an assistant, not a replacement, for human researchers,” Li says. “Human researchers are still indispensable. In fact, we use natural language so the system can explain what it is doing and present observations and hypotheses. But this is a step toward more flexible, self-driving labs.”

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Written by Zach Winn, MIT News

 

UAlbany Atmospheric scientists awarded $855K NOAA grant for water isotope research





University at Albany, SUNY
Water isotope image 

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A small body of water overlooks the mountains in Mendoza, Argentina.

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Credit: Photo courtesy of Laura Gil Martínez / IAEA





ALBANY, N.Y. (Sept. 25, 2025) — Researchers at the University at Albany are exploring a new method to improve weather and climate forecasts that relies on a tiny but powerful assistant — stable water isotopes.

Water isotopes are the naturally occurring variations of hydrogen and oxygen atoms within water molecules. Isotopes have slightly different masses but the same chemical properties, acting like fingerprints that reveal information about a sample’s origin and history.

By measuring differences in isotope masses in rainfall, snow, or even ice, scientists can trace where moisture came from, how it traveled, and the weather conditions it experienced along the way.

Sarah Lu, research faculty at UAlbany’s Atmospheric Sciences Research Center, is leading a three-year, $855,162 project funded by the National Oceanic and Atmospheric Administration (NOAA) to integrate water isotopes into NOAA’s Unified Forecast System.  

The project is supported by a team of researchers from NOAA, UAlbany and Boston College.  

“As natural tracers of moisture exchange, water isotopes provide a unique view into the water cycle across time scales,” said Lu, the project’s principal investigator. “Their tiny mass differences allow scientists to track water movement, including precipitation, and better understand related processes. Our goal is to use these isotopic tracers to study hydrological processes and their uncertainties, which could significantly improve weather predictions.”

The Unified Forecast System (UFS) is an open-source, community-based Earth modeling system, designed as both a research tool and to support weather and climate forecasting. It is designed to unify NOAA's diverse and complex forecasting systems into a single framework.

Over the next three years, Lu’s team will create a tool that integrates existing water isotope measurements into the UFS. The isotope measurements were recently collected in liquid and vapor phases from ground stations, aircraft, ships and satellites.

The research team is developing the new tool to investigate precipitation and other hydrological processes, with a focus on extreme events such as the Madden-Julian Oscillation, a tropical climate pattern that drives rainfall around the globe, atmospheric rivers and the North American monsoon.

Their findings and water isotope datasets will be shared with the broader UFS community.

“This new tool will allow scientists to use the UFS to diagnose and investigate precipitation and hydrological processes,” said Lu. “By adding this capability, we can better study extreme precipitation events and thus improve our weather prediction models.”

Yi Ming, a professor in the Department of Earth and Environmental Sciences at Boston College, is partnering with Lu as the project’s co-principal investigator.

Other UAlbany researchers involved with the project include Scott Miller and Shih-Wei Wei of the Atmospheric Sciences Research Center and Mathias Vuille and Zhiqiang Lyu of the Department of Atmospheric and Environmental Sciences.  

The project will also support a graduate student researcher and two early-career scientists. 

 

Beyond viruses: Expanding the fight against infectious diseases



The newly renamed Gladstone Infectious Disease Institute has broadened its mission to address global health threats ranging from antibiotic resistance to infections that cause chronic diseases.



Gladstone Institutes

Gladstone Infectious Disease Institute: New Name, Bold Mission 

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Melanie Ott, MD, PhD, is director of the newly renamed Gladstone Infectious Disease Institute, which has broadened its mission to address global health threats ranging from antibiotic resistance to infections that cause chronic diseases. 

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Credit: Gladstone Institutes





From influenza and COVID-19 to HIV, viruses continue to pose a serious danger to global health.

But just as pressing are threats from other disease-causing microorganisms such as bacteria—especially the deadly strains that are becoming resistant to antibiotic medicines. And increasingly, scientists are discovering how viruses and bacteria are closely interconnected, influencing health and disease in ways that we’re only beginning to understand.

To reflect this reality, the Gladstone Institute of Virology has taken on a new name: the Gladstone Infectious Disease Institute. The new name aptly encompasses the expanded nature of the institute’s mission to understand and address a range of infectious threats.

“We’re building on the institute’s deep expertise studying viruses to make new discoveries that can impact a greater number of the pressing health challenges we face,” says Melanie Ott, MD, PhD, director of the Gladstone Infectious Disease Institute and the Nick and Sue Hellmann Distinguished Professor at Gladstone Institutes. “The name change is emblematic of our broadened research scope and sets us on the right track for the next decades.”

The Gladstone Infectious Disease Institute is one of five institutes that make up Gladstone Institutes, a San Francisco–based biomedical research organization dedicated to finding cures for the world’s most devastating diseases, including heart disease, neurodegenerative disorders, and cancer.

“As science continuously evolves, we evolve with it,” says Gladstone President Deepak Srivastava, MD. “The expanded vision for our infectious disease research is a strategic decision that will empower us to tackle the global health challenges that lie ahead.”

Evolving to Meet Critical Research Needs

The Gladstone Institute of Virology was established in 1992, originally as the Gladstone Institute of Virology and Immunology. Over time, the institute made its mark across many disciplines, with HIV as an initial and continuing focus.

By discovering how HIV hijacks our immune cells, Gladstone discoveries helped lay the foundation for drugs that have converted AIDS from a universally fatal disease to a chronic condition. In addition, the institute’s scientists led a global study that resulted in FDA approval of the HIV pre-exposure prophylaxis (PReP) drug Truvada, establishing an efficient way to prevent new infections in high-risk populations—now the standard of care around the world.

They also made significant discoveries that led to a better understanding of long COVID, identified powerful drug candidates that could head off future coronavirus pandemics, and provided novel insights into the function of 70,000 lesser-known viral proteins that could help in the development of new antiviral therapies.

“As the Gladstone Infectious Disease Institute, we remain dedicated to these important areas of virology research,” Ott says. “Not only are we still determined to find a cure for HIV, but we’re leveraging the lessons we’ve learned from studying that complex virus to develop new ways to detect and treat many other types of viral infections.”

While researchers in the institute will continue to study viruses including HIV, SARS-CoV-2 (especially in the context of long COVID), Zika, hepatitis C, and influenza, some will delve into new areas of biology.

One team, for instance, is developing novel approaches to make vaccines more effective, and even applying the knowledge to create therapeutic vaccines that can treat cancer.

When Viruses and Bacteria Collide

Across the globe, bacteria that infect humans are evolving mechanisms to evade the medicines designed to kill them. As antibiotics become less and less effective against many types of bacteria, infections like pneumonia and tuberculosis become harder—or, in some cases, impossible—to treat, and routine medical procedures become much riskier.

Within the Gladstone Infectious Disease Institute, scientists are looking at alternative ways to overcome this antibiotic resistance, particularly through harnessing the therapeutic power of bacteriophages—more commonly known as “phages.” Phages are viruses that naturally infect and often kill bacteria in our bodies, making them a promising alternative for treating infections.

One team is carrying out large-scale screens of tens of thousands of phages to identify those with the best potential to counter today’s top antibacterial threats. Another group developed a technology to edit the genomes of phages as a way of engineering them into efficient bacteria-killing machines.

Gladstone scientists are also developing tools to better diagnose viral infections and bacterial diseases such as tuberculosis. For instance, during the COVID-19 pandemic, a team outlined the technology for a rapid, one-step test to detect SARS-CoV-2 using a smartphone camera.

Delving Into the Microbiome

The institute’s researchers also are studying the human microbiome, the complex community of microorganisms—including bacteria, viruses, fungi, and protozoa—that live in and on the human body. In recent years, conditions ranging from autoimmune diseases to psychiatric conditions have been linked to an imbalance in the body’s microbial communities.

Gladstone scientists have developed computational tools to better predict diseases based on microbiome profiles and showed that even a mild SARS-CoV-2 infection can cause long-lasting instability in the gut microbiome.

“It’s nearly impossible today to study the human virome—or the collection of viruses in and on the human body—without also considering the influence of bacteria,” Ott says. “Bacteria not only cause disease, but they also carry viruses. And together, they influence our health in ways we have not yet fully understood.”

“With our new name, we’re taking on this bigger mission,” she adds. “We look forward to continuing to expand the bounds of scientific knowledge on infectious diseases to make breakthroughs that improve global health.”

About Gladstone Institutes

Gladstone Institutes is an independent, nonprofit life science research organization that uses visionary science and technology to overcome disease. Established in 1979, it is located in the epicenter of biomedical and technological innovation, in the Mission Bay neighborhood of San Francisco. Gladstone has created a research model that disrupts how science is done, funds big ideas, and attracts the brightest minds.

Babies who grow up around dogs may have a lower risk of developing childhood asthma


No protective effect found for living with cats




European Respiratory Society

Jacob McCoy 

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Jacob McCoy

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Credit: Jacob McCoy / ERS






Babies exposed to dog allergens in the home have a lower risk of developing asthma by the age of five years, according to research that will be presented at the European Respiratory Society (ERS) Congress in Amsterdam, the Netherlands [1]. The researchers also studied babies’ exposure to cat allergens but did not find the same protective effect.

 

The research was by a team from The Hospital for Sick Children (SickKids) in Toronto, Canada, led by Dr Makiko Nanishi, and will be presented by Dr Jacob McCoy. Speaking ahead of the Congress Dr McCoy said: “Asthma is a very common chronic respiratory illness in children, with the highest rates in the first four years of life. It is caused by complex interactions between genetic factors and the environment, including infections, allergies and air pollution.

 

“Children spend most of their time indoors, so in this research we wanted to study allergens in the home. These are an important risk factor that we could potentially alter to reduce asthma.”

 

The research included a group of 1050 children who were part of the Canadian CHILD cohort study. Researchers analysed samples of dust from the children’s homes taken when they were between three and four months old. For each child, researchers measured the quantities of three potential allergens in the dust: Can f1 (a protein shed in dog skin and saliva), Fel d1 (a protein shed in cat skin and saliva) and endotoxin (a molecule on the surface of bacteria).

 

When the children were five years old, they were assessed for asthma by a doctor, and their lung function was measured according to how much air they could blow out in one second after a deep breath in (forced expiratory volume in one second or FEV1). The children also gave blood samples so they could be assessed for genetic risk factors for asthma and allergies.

 

The researchers found that babies exposed to higher levels of the dog allergen Can f1 had around a 48% lower risk of developing asthma by the age of five years, compared to other babies. Babies exposed to higher levels of dog allergen also had better lung function. This protective effect was even stronger in babies who were at higher genetic risk of worse lung function.

 

The researchers found no protective effect for babies exposed to the cat allergen Fel d1 or the bacterial endotoxin.

 

Dr McCoy said: “In this study, we examined pet allergens from dogs and cats. We found that, while cat allergens showed no association, exposure to dog allergens was linked to improved lung function and a reduced risk of asthma. We don’t know why this happens; however, we do know that once a person becomes sensitive to dog allergens, they can make asthma symptoms worse. This suggests that early exposure to dog allergens could prevent sensitisation, perhaps by altering the nasal microbiome – the mixture of microbes living inside the nose – or by some effect on the immune system.

 

“Our findings highlight the potential protective role of dog allergens, but we need to do more research to understand the link between early-life exposure to dog allergens, lung function and asthma during early childhood.”

 

Dr Erol Gaillard, Chair of the European Respiratory Society’s expert group on paediatric asthma and allergy and Associate Professor at the University of Leicester, UK, who was not involved in the research, said: “Asthma is the most common long-term condition among children and young people and is also one of the main reasons for children being admitted to hospital for emergency treatment. Although there are good treatments that can reduce or stop asthma symptoms, we also want to reduce risk factors to try to prevent asthma.

 

“This study suggests that babies who grow up around dogs may have a lower risk of developing asthma. This is potentially good news for families with pet dogs; however, we need to know more about this link and how living with pets affects children’s developing lungs in the longer term.”

 

Turning a problem into a resource: Scientists transform biomass tar into high-value carbon materials





Biochar Editorial Office, Shenyang Agricultural University

Preparation of bio-carbon by polymerization of bio-tar: a critical review on mechanisms, processes, and applications 

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Preparation of bio-carbon by polymerization of bio-tar: a critical review on mechanisms, processes, and applications
 

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Credit: Yuxuan Sun, Jixiu Jia, Lili Huo, Xinyi Zhang, Lixin Zhao, Ziyun Liu, Yanan Zhao & Zonglu Yao





A sticky, toxic by-product that has long plagued renewable energy production may soon become a valuable resource, according to a new review published in Biochar.

When biomass such as crop residues, wood, or other organic matter is heated to produce clean energy and biochar, it also generates a thick liquid known as bio-tar. This tar easily clogs pipelines, damages equipment, and poses environmental risks if released into the atmosphere. For decades, researchers have sought ways to eliminate or neutralize it.

Now, a team led by scientists at the Chinese Academy of Agricultural Sciences argues that instead of being treated as waste, bio-tar can be converted into “bio-carbon”—a novel material with applications ranging from water purification to clean energy storage.

“Our review highlights how turning bio-tar into bio-carbon not only solves a technical problem for the bioenergy industry, but also opens the door to producing advanced carbon materials with high economic value,” said senior author Dr. Zonglu Yao.

The review examines how chemical reactions inside bio-tar, particularly those involving oxygen-rich compounds like carbonyls and furans, naturally promote polymerization—processes where small molecules link together to form larger, more stable carbon structures. By carefully adjusting temperature, reaction time, and additives, researchers can harness this process to produce bio-carbon with tailored properties.

The resulting material, the authors note, is distinct from ordinary biochar. Bio-carbon typically has higher carbon content, lower ash, and unique structural features that make it especially suited for advanced uses. Early studies suggest that bio-carbon could serve as:

  • Adsorbents to clean polluted water and air by trapping heavy metals and organic contaminants.

  • Electrode materials for next-generation supercapacitors, which are vital for renewable energy storage.

  • Catalysts that speed up industrial chemical reactions more sustainably than traditional fossil-based options.

  • Clean-burning fuels with lower emissions of harmful nitrogen and sulfur oxides.

Importantly, recent economic and life-cycle assessments suggest that converting bio-tar into bio-carbon can deliver net-positive energy, financial, and environmental benefits. For example, replacing coal with bio-carbon fuels could cut carbon dioxide emissions by hundreds of millions of tons annually, while also generating profits for biomass processing plants.

Still, challenges remain. The chemical complexity of bio-tar makes it difficult to fully control the polymerization process, and large-scale production has not yet been achieved. The authors recommend combining laboratory experiments with computer simulations and machine learning to optimize reaction pathways and design bio-carbon with specific functions.

“Bio-tar polymerization is not just about waste treatment—it represents a new frontier for creating sustainable carbon materials,” said first author Yuxuan Sun. “With further research, this approach could significantly improve the efficiency of biomass energy systems while providing new tools for environmental protection and clean technology.”

The study provides a roadmap for scientists and industry partners to turn one of bioenergy’s biggest obstacles into a powerful resource for the future.

 

 

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Journal Reference: Sun, Y., Jia, J., Huo, L. et al. Preparation of bio-carbon by polymerization of bio-tar: a critical review on mechanisms, processes, and applications. Biochar 7, 90 (2025). https://doi.org/10.1007/s42773-025-00477-9 

 

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About Biochar

Biochar is the first journal dedicated exclusively to biochar research, spanning agronomy, environmental science, and materials science. It publishes original studies on biochar production, processing, and applications—such as bioenergy, environmental remediation, soil enhancement, climate mitigation, water treatment, and sustainability analysis. The journal serves as an innovative and professional platform for global researchers to share advances in this rapidly expanding field. 

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