Wednesday, August 06, 2025

BAN DEEP SEA MINING

MBARI researchers deploy new imaging system to study the movement of deep-sea octopus



3D visual data collected by MBARI’s groundbreaking EyeRIS camera system could contribute to the design of bioinspired robots in the future.




Monterey Bay Aquarium Research Institute

MBARI's EyeRIS camera system observing the locomotion of a deep-sea octopus 

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MBARI’s innovative EyeRIS camera system collects near real-time three-dimensional visual data about the structure and biomechanics of marine life. Filming deep-sea pearl octopus (Muusoctopus robustus) with this system has provided new insight into octopus locomotion that can contribute to the design of bioinspired robots in the future. Image: © 2022 MBARI

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Credit: © 2022 MBARI





MBARI researchers have developed an innovative imaging system that can be deployed at great depths underwater to study the movement of marine life. The team used the system to study deep-sea octopus and shared their findings in the scientific journal Nature.

EyeRIS (Remote Imaging System) can capture detailed three-dimensional visual data about the structures and movement of marine life in their natural deep-sea habitat. MBARI researchers integrated EyeRIS on board a remotely operated vehicle to observe deep-sea pearl octopus (Muusoctopus robustus) at the famous Octopus Garden offshore of Central California.

“In MBARI’s Bioinspiration Lab, we look to nature to find inspiration for tackling fundamental engineering challenges,” said Principal Engineer Kakani Katija. “Octopuses are fascinating subjects as they have no bones yet are able to move across complex underwater terrain with ease. Until now, it has been difficult to study their biomechanics in the field, but EyeRIS is a game changer for us.” 

“EyeRIS allowed us to follow several individuals as they moved, completely unconstrained, in their natural environment,” said Senior Research Specialist Crissy Huffard. “Our team was able to get 3D measurements of their arms in real-time as they crawled over the rough terrain of the deep seafloor.”

EyeRIS uses a specialized, high-resolution camera with a dense array of microlenses that collects simultaneous views of any object in its sight. Software uses that data to create imagery where every pixel in an image is in focus. EyeRIS can create a three-dimensional reconstruction of an animal's movements so researchers can observe individual features in stunning detail. MBARI researchers used EyeRIS to track the movements of specific points on an octopus’s arm, identifying areas of curvature and strain in real time as the animal crawled over the rugged seafloor.

“EyeRIS data showed that pearl octopus use temporary muscular joints in their arms when crawling, with strain and bend concentrated above and below the joint. This allows them to have simple, but sophisticated, control of their arms,” said Huffard. “The mechanisms of this simplified control could be valuable for designing octopus-inspired robots and other bioinspired technologies in the future.” 

EyeRIS is the latest example of how technology can help us better understand ocean life. This versatile new imaging system can study marine animals that live on the seafloor and in the water column.

“There is still so much to learn about marine life. EyeRIS will allow us to continue to study the movement and behavior of octopuses and other deep-sea animals in their natural environment using non-invasive techniques. I’m excited to see how this growing body of research and new technology sparks future bioinspired engineering innovation,” said Katija. 

The development of EyeRIS was made possible by the David and Lucile Packard Foundation and the Gordon and Betty Moore Foundation.

 

About MBARI
MBARI (Monterey Bay Aquarium Research Institute) is a non-profit oceanographic research center founded in 1987 by the late Silicon Valley innovator and philanthropist David Packard. Our mission is to advance marine science and engineering to understand our changing ocean. Learn more at mbari.org

 

Big heart, acute senses key to explosive radiation of early fishes




Digital reconstruction of tiny, 400-million-year-old fish shows how anatomy geared toward evading predators equipped it to become the hunter once jaws evolved





University of Chicago

Heads up reconstruction 

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Reconstruction of Norselapsis glacialis in their aquatic environment

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Credit: Kristen Tietjin





An international team led by scientists from the Canadian Museum of Nature and the University of Chicago reconstructed the brain, heart, and fins of an extinct fish called Norselaspis glacialis from a tiny fossil the size of fingernail and found evidence of change toward a fast-swimming, sensorily attuned lifestyle well before jaws and teeth were invented to better capture food.

“These are the opening acts for a key episode in our own deep evolutionary history,” said Tetsuto Miyashita, who is a research scientist with the museum and lead author of the new study published in the journal Nature this week.

Fish have been around for half a billion years. The earliest species lived close to the seafloor, but when they evolved jaws and teeth, everything changed; by 400 million years ago, jawed fishes dominated the water column. Ultimately, limbed animals--including humans—also originated from this radiation of vertebrates.

It has long been a mystery, however, how this pivotal event occurred. The standard theory holds that jaws evolved first, and other body parts underwent changes to sustain a new predatory lifestyle. “But there is a large data gap beneath this transformation,” said Michael Coates, Professor and Chair of Organismal Biology and Anatomy at UChicago and a senior author of the study. “We’ve been missing snapshots from the fossil record that would help us order the key events to reconstruct the pattern and direction of change.”

The new study flips the “jaws-first” idea on its head. “We found features in a jawless fish, Norselaspis, that we thought were unique to jawed forms,” said Miyashita, who was formerly a postdoc in Coates’ lab in Chicago. “This fossil from the Devonian Period more than 400 million years ago shows that acute senses and a powerful heart evolved well before jaws and teeth.”

The fossil of Norselaspis the team studied is so exquisitely preserved in a fragment of rock that they were able to scan it and see impressions of its heart, blood vessels, brain, nerves, inner ears, and even the tiny muscles that moved the eyeball. The fossil was hidden in one of thousands of sandstone blocks collected during a French paleontological expedition to Spitsbergen, Norway’s Arctic archipelago, in 1969. Sorting through these rocks 40 years later, the study’s coauthors Philippe Janvier and Pierre Gueriau split one open, revealing a perfectly preserved cranium of Norselaspis barely half an inch long. The team took the fossil to a particle accelerator at the Paul Scherrer Institute in Switzerland to scan it with high-energy X-ray beams.

The result was jaw-dropping. Slice by slice, the X-ray images revealed delicate films of bone that enclosed the fish’s organs with astonishing detail. At a hundredth of a millimetre wide, these tissue-thin bones capture the ghosts of organs formerly held by the skeleton. Back in Chicago, digital imaging specialist Kristen Tietjen (now at the Biodiversity Institute at the University of Kansas) worked with Miyashita and Coates to digitally dissect and stitch together the fish’s anatomy through thousands of screen hours.

“With this exquisite digital atlas, we now know Norselaspis in greater anatomical detail than many living fishes,” Miyashita said. For example, the fish had seven tiny muscles to move its eyeballs, whereas humans have six. It had outsized inner ears, an enormous heart, and vessels arranged like highway bypasses to carry more blood. Miyashita draws comparisons to fruit. “If Norselaspis was to our scale, its inner ears would be each the size of an avocado, and its heart would be as large as a cantaloupe melon,” he said.

Fish use their inner ears in much the same way that we use ours, to sense vibration, orientation, and acceleration. The capacious heart and greater blood flow provides more horsepower for the animal. “One might even say Norselaspis had the heart of a shark under the skin of a lamprey,” Miyashita said.

The fish also sported a pair of tilted, paddle-like fins behind the gills, which Coates explained would have been useful for making sudden stops, bursts and turns. These anatomical innovations made Norselaspis something of a sportscar among the generally sluggish jawless fishes of its time.

Such “action-packed” anatomy likely evolved for evading predators rather than for chasing prey. But what triggers rapid escape responses in jawless fish would in turn give jawed fish an advantage to do the opposite, detecting and capturing food efficiently. “When jaws evolved against this background, it brought about a pivotal combination of sensory, swimming, and feeding systems, eventually leading to the extraordinary variety and abundance of Devonian fishes,” Coates said.

The earliest jaws were probably better adapted for sucking up food along with water and mud than for snapping at passing prey, however. “It wasn’t as simple as marching straight from a bottom feeder to an apex predator,” Miyashita said.

The new study also challenges the idea that shoulders and arms in modern tetrapods evolved from modified gill structures. The team traced the nerve going to the shoulder in Norselaspis and saw that it was separate from the nerves going to the gills—clear evidence that one did not come from the other. Instead, the team argues that the shoulder evolved as a wholly new structure with a new domain, the neck, separating the head the from the torso.

“A lot of these evolutionary changes have to do with how the head is attached to the trunk,” Miyashita said. In primitive jawless fishes, the head is continuous from the torso, while jawed vertebrates have a neck and throat to separate the two regions. Norselaspis is in the middle; Its head is directly attached to the shoulder without a neck, almost as if our arms were sticking out behind the cheeks. But the organs at this interface, like inner ears, shoulders and a heart, are enhanced or reorganized for greater abilities to navigate its environment.

Paleontologists are still investigating what ignited this transformation. Some, like Christian Klug of the University of Zurich, Switzerland, who was not involved in the study, believe the lineage of Norselaspis arose in the time of the so-called Nekton Revolution, when marine organisms were beginning to move up in the water column. The game then was about getting faster, smarter, and more manoeuvrable.

“For a historical event, we often emphasize one or two symbolic moments to the point of becoming a cliché. In this sense, the evolution of jaws is like a gunshot in Sarajevo starting World War I in 1914,” Miyashita said. “But it is imperative we understand the context. With Norselaspis, we can really find it in its heart.”





Reconstruction of Norselapsis glacialis



Credit

Kristen Tietjin







The tiny 400-million-year-old fossil of Norselapsis studied by the research team








Digital 3D image of the Norselaspis skull cut away from side




Digital 3D image of the Norselaspis skull showing the brain and inner ear



Credit

Michael Coates, University of Chicago


Research scientist Tetsuto Miyashita holds an enlarged 3D reconstruction of the brain and sensory organs of Norselapsis

Credit

Pierre Poirier, Canadian Museum of Nature

 

Archaeologists find oldest evidence of humans on ‘Hobbit’s’ island neighbor – who they were remains a mystery




Griffith University
Stone tools 

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Stone tools were excavated from Calio, Sulawesi, and dated to over 1.04 million years ago. The scale bars are 10 mm.

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Credit: Credit: M.W. Moore/University of New England





Recent findings, made by Griffith University researchers, show that early hominins made a major deep-sea crossing to reach the Indonesian island of Sulawesi much earlier than previously established, based on the discovery of stone tools dating to at least 1.04 million years ago at the Early Pleistocene (or ‘Ice Age’) site of Calio.

Budianto Hakim from the National Research and Innovation Agency of Indonesia (BRIN) and Professor Adam Brumm from the Australian Research Centre for Human Evolution at Griffith University led the research published today in Nature.

A field team led by Hakim excavated a total of seven stone artefacts from the sedimentary layers of a sandstone outcrop in a modern corn field at the southern Sulawesi location.

In the Early Pleistocene, this would have been the site of hominin tool-making and other activities such as hunting, in the vicinity of a river channel.

The Calio artefacts consist of small, sharp-edged fragments of stones (flakes) that the early human tool-makers struck from larger pebbles that had most likely been obtained from nearby riverbeds.

The Griffith-led team used palaeomagnetic dating of the sandstone itself and direct-dating of an excavated pig fossil, to confirm an age of at least 1.04 million years for the artefacts.

Previously, Professor Brumm’s team had revealed evidence for hominin occupation in this archipelago, known as Wallacea, from at least 1.02 million years ago, based on the presence of stone tools at Wolo Sege on the island of Flores, and by around 194 thousand years ago at Talepu on Sulawesi.

The island of Luzon in the Philippines, to the north of Wallacea, had also yielded evidence of hominins from around 700,000 years ago.

“This discovery adds to our understanding of the movement of extinct humans across the Wallace Line, a transitional zone beyond which unique and often quite peculiar animal species evolved in isolation,” Professor Brumm said.

“It’s a significant piece of the puzzle, but the Calio site has yet to yield any hominin fossils; so while we now know there were tool-makers on Sulawesi a million years ago, their identity remains a mystery.”

The original discovery of Homo floresiensis (the ‘hobbit’) and subsequent 700,000-year-old fossils of a similar small-bodied hominin on Flores, also led by Professor Brumm’s team, suggested that it could have been Homo erectus that breached the formidable marine barrier between mainland Southeast Asia to inhabit this small Wallacean island, and, over hundreds of thousands of years, underwent island dwarfism.

Professor Brumm said his team’s recent find on Sulawesi has led him to wonder what might have happened to Homo erectus on an island more than 12 times the size of Flores?

“Sulawesi is a wild card – it’s like a mini-continent in itself,” he said.

“If hominins were cut off on this huge and ecologically rich island for a million years, would they have undergone the same evolutionary changes as the Flores hobbits? Or would something totally different have happened?”

The study ‘Hominins on Sulawesi during the Early Pleistocene’ has been published in Nature.

 

Changes to El Niño occurrence causing widespread tropical insect and spider declines





Griffith University
Arthropod impacts 

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Tropical forest arthropods and the functions that they provide may be vulnerable to intensified El Niño events under climate change.

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Credit: Marco Chan






Arthropods, including insects and spiders, make up the vast majority of animal species on the planet.

Despite their small size they are irreplaceable contributors to the health of natural habitats, as well as vital food sources for birds and other larger animals.

But, arthropods may be declining globally. There is some evidence to support reduced numbers of species in temperate regions of the Northen Hemisphere. In the tropics, however, evidence for arthropod declines has so far been limited.

A recent international collaboration of scientists has attempted to find this missing evidence, with the findings published in Nature.

The team, including Professors Roger Kitching and Nigel Stork from Griffith University’s School of the Environment and Science, conducted a whole-of-tropics analysis on tropical forest insects and their relatives and the ecological roles that they perform.

Combining information from over 80 previous studies in tropical forest sites that have never been commercially altered by humans, the team found significant biodiversity loss in multiple types of arthropod, including butterflies, beetles and spiders.

The biodiversity loss matched drops in the amount of live leaf material consumed by arthropods over time, and substantial instability in the amount of dead leaves decomposed by arthropods.

“To find such large declines over many studies is really bad news,” said Dr Adam Sharp, first author and data analyst from Hong Kong University.

“Our results suggest strongly that the immense biodiversity of tropical forest arthropods is immediately threatened.

"Since all of the data we used comes from forest considered ‘untouched’, even the deepest and darkest tropical forests are likely to be heavily impacted.”

The team link climate change to the declines in arthropods and their respective ecological roles. The tropics experience natural but irregular year-to-year variation in climate, driven by an atmospheric phenomenon called the El Niño Southern Oscillation – ENSO. Long-term changes to the ENSO cycle, caused by climate change, are likely behind the observed arthropod declines.

Arthropods can be highly sensitive to ENSO, with different arthropod types coming and going during the opposing El Niño and La Niña stages of the cycle.

While there is considerable difference in effect across the tropics, El Niño conditions are often hot and dry while La Niña conditions are often cooler and wetter.

They should usually strike a balance such that no arthropods ever disappear completely - but the El Niño part of the ENSO cycle is becoming more frequent and more intense due to climate change.

“We believe that changes to El Niño occurrence are causing widespread arthropod declines,” said corresponding author Dr Mike Boyle.

“In these tropical forests that haven’t otherwise been physically modified by humans we can rule out habitat loss, pesticides, pollution and various other threats. In these places El Niño seems to be the prime suspect.”

Indeed, the team found the largest declines in arthropods occurred in those that favour La Niña conditions. If El Niño is becoming detrimental due to climate change, then its occurrence is sure to further chip away at arthropod biodiversity into the future.

“Arthropods are essential components of functioning ecosystems, carrying out vital processes including decomposition, herbivory and pollination,” said University of Hong Kong Associate Professor Louise Ashton.

“We must better understand how nature is shifting and what is happening to arthropods and their ecosystem processes in response to environmental change.

Co-author Professor Roger Kitching from Griffith University said: “The crucial message for Australia is the need to monitor the biodiversity in our rainforests – revisiting previous surveys is the key.”

The international team continue their research at forest sites across Hong Kong and Mainland China, Australia and Malaysia.

The study ‘Stronger El Niños reduce tropical forest arthropod diversity and function’ has been published in Nature.

POLLINATORS!

Decline of seed-dispersing animals hinders fight against climate change



International team of researchers issues global warning about the need to include frugivores in conservation, forest restoration, and climate change mitigation strategies.




Fundação de Amparo à Pesquisa do Estado de São Paulo

Decline of seed-dispersing animals hinders fight against climate change 

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The seed of the fruit passes through the digestive tract of the dispersing animal, where it undergoes treatment that prepares it to germinate when deposited 

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Credit: Mauro Galetti/CBioClima

 




Most trees in the Amazon (90%), the Atlantic Forest (90%), or the Cerrado, the Brazilian savannah-like biome (60%), depend on animals to disperse their seeds, ensure their reproduction, and keep the forest standing. Birds, mammals, fish, and even a species of amphibian play a crucial role in forest diversity around the world. However, this process has been disintegrating as populations of seed-dispersing animals have declined dramatically.

The loss of frugivorous animals (whose diet consists mainly of fruit) has another effect: it alters the composition of forests, weakening their ability to absorb carbon dioxide and thus reducing their role in combating climate change.

Yet, major global efforts to protect and restore ecosystems continue to underestimate seed-dispersing animals in biodiversity conservation and forest restoration strategies.

“There’s a lot of talk today about carbon credits and forest restoration, but who ‘plants’ the carbon? It’s the toucan, the agouti, the tapir, the jacutinga. To have a copaiba tree, for example, the forest needs toucans and monkeys to disperse its seeds. Therefore, we need to include frugivorous animals in the restoration equation, as there’s already enough science to quantify how much forest carbon is planted by animals,” says Mauro Galetti, one of the directors of the Center for Research on Biodiversity Dynamics and Climate Change (CBioClima), a FAPESP Research, Innovation, and Dissemination Center (RIDC) based at the Institute of Biosciences of São Paulo State University (IB-UNESP) in Rio Claro, Brazil.

Galetti and researchers from the United States, Switzerland, Panama, Germany, Spain, and Portugal published an article in Nature Reviews Biodiversity warning about the consequences of losing seed dispersers in a changing climate. According to the researchers, the role of frugivorous animals in maintaining plant biodiversity is so central that efforts to restore and protect ecosystems are at risk of failing to meet their goals if the decline of seed dispersers is not mitigated.

A recent study published in the journal Science by some of the researchers who signed the alert showed that the worldwide loss of birds and mammals results in a 60% reduction in seed dispersal. “We’ve made great strides in addressing these problems of seed disperser loss, and although Brazil is the country with the most scientific studies on seed dispersal, we need to delve deeper into the problem and understand, for example, which plants and ecosystems are most vulnerable to this loss. In addition, of course, we need to identify which strategies best restore seed dispersal,” says the researcher.

Unknown heroes

When a dispersing animal eats a fruit, it becomes “contaminated” by the seed that passes through the digestive tract. The seed receives chemical treatment from gastric juices or mechanical treatment – in the case of birds, for example, the gizzard crushes the seed – which allows water to enter the seed, leaving it ready to germinate wherever the animal later deposits it when defecating.

“Therefore, seeds consumed by animals will germinate more, faster, and will establish themselves in safer places to grow. And if there’s no animal to ‘bruise’ the seed and take it away from the mother plant, it won’t germinate, and even if it germinates near the mother plant, it’ll probably die because there’ll be competition between them,” says Galetti.

However, it is important to note that there is no standard. This interaction is different in every place in the world and for every species of tree and vertebrate animal. “The Brazil nut, for example, has only one disperser: the agouti. If the agouti becomes extinct locally, the Brazil nut’s seed dispersal service will succumb. We therefore depend on a fundamental ecological service provided by the agouti,” says Galetti.

While birds, bats, monkeys, and tapirs are the main seed dispersers in the Atlantic Forest, fish play a crucial role in the Amazon and Pantanal. “Pacu and tambaqui fish, for example, travel long distances and eat large quantities of fruit, which makes them super dispersers of different species in riparian forests,” says the researcher.

Ecosystem services

Like bees and other pollinators, frugivorous animals play a crucial role in plant reproduction. However, despite being threatened by similar factors, such as land use changes and direct exploitation, the two groups respond differently to these impacts. Pollinators are more affected by pesticides, while seed dispersers are more affected by habitat loss and hunting.

Another difference is that the decline of pollinators has received more public and political attention because their absence directly affects food production. The impacts of seed disperser loss, on the other hand, are more difficult to measure and influence biodiversity and carbon storage over time.

“Both are important and should be taken into account in restoration and conservation projects. However, the decline of pollinators is more easily measured in the short term, generating immediate economic impacts such as loss of crop productivity, while the effects of seed disperser loss occur slowly and broadly, compromising the functionality and resilience of ecosystems,” Galetti explained to Agência FAPESP.

The scientist says that the economic costs of the decline of seed dispersers – such as the loss of carbon storage, the reduced supply of forest products, and the decline in natural resilience to extreme environmental events – have not yet been quantified globally. “Restoration isn’t just about planting trees; you have to consider who will maintain the future of that forest, which are the dispersing animals. A few years ago, it was believed that by planting the forest, these animals would come to it. But that’s not how it works. It’s much more complex to have a restored forest functioning,” he says.

In the article, the researchers highlight that new syntheses and data models are capturing large-scale functional changes and helping to reveal long-term impacts, such as impaired recovery from forest fires and degraded animal habitats. “Addressing the decline of seed dispersers is critical to preserving animal biodiversity, ensuring forest connectivity, and balancing plant communities,” says Galetti.

About São Paulo Research Foundation (FAPESP)
The São Paulo Research Foundation (FAPESP) is a public institution with the mission of supporting scientific research in all fields of knowledge by awarding scholarships, fellowships and grants to investigators linked with higher education and research institutions in the State of São Paulo, Brazil. FAPESP is aware that the very best research can only be done by working with the best researchers internationally. Therefore, it has established partnerships with funding agencies, higher education, private companies, and research organizations in other countries known for the quality of their research and has been encouraging scientists funded by its grants to further develop their international collaboration. You can learn more about FAPESP at www.fapesp.br/en and visit FAPESP news agency at www.agencia.fapesp.br/en to keep updated with the latest scientific breakthroughs FAPESP helps achieve through its many programs, awards and research centers. You may also subscribe to FAPESP news agency at http://agencia.fapesp.br/subscribe.