Sunday, December 18, 2022

Measuring times in billionths of a billionth of a second

Peer-Reviewed Publication

ULTRAFAST SCIENCE

Schematics of the experimental setup for Gouy phase interferometer. 

IMAGE: SCHEMATICS OF THE EXPERIMENTAL SETUP FOR GOUY PHASE INTERFEROMETER. THE SCHEMATIC OF THE EXPERIMENTAL SETUP IS SHOWN IN FIGURE 1. THERE ARE TWO MOVEABLE MOLECULAR JETS SEPARATED IN SPACE NEAR THE FOCUS OF THE DRIVING INFRARED LASER BEAM. THE PHASE DIFFERENCE BETWEEN HHG EMISSIONS FROM THE TWO JETS INCLUDES A CONTRIBUTION FROM THE GOUEY PHASE (THE ONLY CONTRIBUTION WHEN THE SAME GAS IS FLOWING IN BOTH JETS) AND AN ADDITIONAL PHASE SHIFT DUE TO THE DIFFERENT INTRINSIC HHG PHASES OF DIFFERENT SPECIES. TO EXTRACT THAT INTRINSIC PHASE SHIFT, THE HHG SPECTRA ARE MEASURED FIRST WITH THE SAME GASES IN BOTH JETS AND THEN WITH DIFFERENT GASES SWITCHED BETWEEN THE JETS. THIS PROCEDURE ALLOWS TO COMPLETELY REMOVE THE CONTRIBUTION OF THE GOUY PHASE AND THE EFFECT OF SLIGHTLY DIFFERENT INTENSITIES AT THE JETS’LOCATIONS. view more 

CREDIT: ULTRAFAST SCIENCE

How fast do electrons inside a molecule move? Well, it is so fast that it takes them just few attoseconds (1 as = 10-18 s or one billionth of billionth of a second) to jump from one atom to another. Blink and you missed it – millions of billions of times. So measuring such ultrafast processes is a daunting task. 

Scientists at the Australian Attosecond Science Facility and the Centre for Quantum Dynamics of Griffith University in Brisbane Australia, led by Professor Robert Sang and Professor Igor Litvinyuk have developed a novel interferometric technique capable of measuring time delays with zeptosecond (a trillionth of a billionth of a second) resolution. 

They have used this technique to measure the time delay between extreme ultraviolet light pulses emitted by two different isotopes of hydrogen molecules – H2 and D2 – interacting with intense infrared laser pulses. 

This delay was found to be less than three attoseconds (one quintillionth of a second long) and is caused by slightly different motions of the lighter and heavier nuclei. 

This study has been published in Ultrafast Science, a new Science Partner Journal.

The first author Dr Mumta Hena Mustary explains: “Such unprecedented time resolution is achieved via an interferometric measurement – overlapping the delayed light waves and measuring their combined brightness.” 

The light waves themselves were generated by molecules exposed to intense laser pulses in the process called high harmonic generation (HHG). 

HHG occurs when an electron is removed from a molecule by a strong laser field, is accelerated by the same field and then recombines with the ion giving up the energy in the form of extreme ultraviolet (XUV) radiation. Both intensity and phase of that XUV HHG radiation are sensitive to exact dynamics of the electron wavefunctions involved in this process – all different atoms and molecules emit HHG radiation differently. 

While it is relatively straightforward to measure spectral intensity of HHG – a simple grating spectrometer can do that – measuring HHG phase is a far more difficult task. And the phase contains the most relevant information about the timing of various steps in the emission process. 

To measure this phase, it is usual to perform a so-called interferometric measurement when two replicas of the wave with finely controlled delay are made to overlap (or interfere) with each other. They can interfere constructively or destructively depending on the delay and relative phase difference between them. 

Such measurement is performed by a device called an interferometer. It is very difficult to build an interferometer for XUV light, in particular to produce and maintain a stable, known and finely tuneable delay between two XUV pulses. 

The Griffith researchers solved this problem by taking advantage of the phenomenon known as the Gouy phase – when phase of a light wave is shifted a certain way while going through a focus. 

For their experiments the researchers used two different isotopes of molecular hydrogen – the simplest molecule in nature. The isotopes – light (H2) and heavy (D2) hydrogen – differ only in mass of nuclei – protons in H2 and deuterons in D2. Everything else including the electronic structure and energies are identical. 

Due to their larger mass the nuclei in D2 move slightly slower then those in H2. Because nuclear and electronic motions in molecules are coupled, nuclear motion affects the dynamics of the electron wavefunctions during the HHG process resulting in a small phase shift ΔφH2-D2 between the two isotopes. 

This phase shift is equivalent to a time delay Δt = ΔφH2-D2 /ω where ω is the frequency of the XUV wave. The Griffith scientists measured this emission time delay for all the harmonics observed in the HHG spectrum – it was nearly constant and slightly below 3 attoseconds. 

To understand their result the Griffith researchers were supported by theorists at Shanghai Jiao Tong University in Shanghai, China, led by Professor Feng He. 

The SJTU scientists used the most advanced theoretical methods to comprehensively model the HHG process in the two isotopes of molecular hydrogen including all degrees of freedom for nuclear and electronic motion at various levels of approximation. 

Their simulation reproduced experimental results well, and this agreement between theory and experiment gave the team confidence that the model captured the most essential features of the underlying physical process, so adjusting the model’s parameters and levels of approximation can determine the relative importance of various effects. 

While the actual dynamics is quite complex, it was found that two-centre interference during the electron recombination step is the dominant effect.
“Because hydrogen is the simplest molecule in nature and it can be modelled theoretically with high accuracy it was used in these proof-of-principle experiments for benchmarking and validation of the method,” Professor Litvinyuk said. 

“In the future, this technique can be used to measure ultrafast dynamics of various light-induced processes in atoms and molecules with unprecedented time resolution.”

Securing stable green energy under future extreme weather conditions

Climate is changing, and this will affect future energy systems based on solar and wind. But how? A new research project at Aarhus University will focus on this with a Sapere Aude grant from Independent Research Fund Denmark.

Grant and Award Announcement

AARHUS UNIVERSITY

Associate Professor Marta Victoria 

IMAGE: ASSOCIATE PROFESSOR MARTA VICTORIA view more 

CREDIT: CLAUS LILLEVANG, INDEPENDENT RESEARCH FUND DENMARK

In February 2021, the state of Texas was hit by wave of cold weather lasting two weeks. The event was without precedent, and the Texan energy supply, which is primarily dependent on wind, coal and gas, was completely unprepared for this kind of extreme weather.

Due to the cold weather, gas pipes and some wind turbines froze, and since this was accompanied by a period with low wind speeds, it caused two-week-long power outages in 4.5 million homes. The incident cost USD 24 billion and 262 people lost their lives. It was the worst winter-weather disaster ever in the US.

The European energy network is better interconnected and prepared to deal with such events, but in a future with increasing climate change and more extreme weather, such events will very likely occur again.

So how do we ensure a stable future energy system, if this will be based on energy sources that may well be sustainable and renewable, but that are also dependent on local weather conditions?

A new research project at Aarhus University will now try to explain.

"We can't build an energy system that takes account of everything. That would be extremely costly. So, what do we do if there is a long period without wind and without sun, and with a high demand for energy, and how can we adapt the system without over-dimensioning it? We need to find out what we have to be prepared for when the weather changes as a result of climate change," says Associate Professor Marta Victoria from the Department of Mechanical and Production Engineering at Aarhus University, who is heading the project.

She has just received a prestigious Sapere Aude-grant from Independent Research Fund Denmark (DFF) of DKK 6.2 million. Her project is called EXTREMES (Highly renewable energy systems under extreme weather events) and it aims to describe periods of extreme weather using statistics, and to design strategies to ensure that an energy system with a very high proportion of solar and wind energy is reliable, even under extreme weather conditions.

"How long will the worst period of low wind or solar production be? How many times a year will this happen? What is the worst period we can expect within a decade? Or a century? And what conditions should we adapt the system to? As a rule, there’s a backup, but in the project we’ll try to take into account situations where several adverse events happen at the same time, and where spatial and temporal fluctuations can be hard to predict," she says.

The project starts in spring 2023 and will run for four years.

Sapere Aude grants are awarded by Independent Research Fund Denmark to talented early-career researchers to enable them to develop and strengthen their own research ideas and establish themselves as research directors with the foundation's financial assistance.

This year, Independent Research Fund Denmark has awarded Sapere Aude grants to 41 researchers following 356 applications. Of these, 12 recipients are from Aarhus University: The 41 researchers share a total of DKK 247 million.

Plastic pollution kills sea urchin larvae


Peer-Reviewed Publication

UNIVERSITY OF EXETER

Sea urchin development 

IMAGE: SEA URCHIN DEVELOPMENT IN UNCONTAMINATED SEAWATER AND VARIOUS CONCENTRATIONS OF PVC NURDLES view more 

CREDIT: DR EVA JIMENEZ-GURI

Sea urchin larvae raised in high levels of plastic pollution die due to developmental abnormalities, new research shows.

Scientists put fertilised urchin eggs in seawater with varying levels of plastic, and compared the effects of newly made PVC pellets (called nurdles) with fragments collected on beaches.   

In all three concentrations tested (1%, 5% and 10% of plastic in seawater), PVC led to significant abnormalities and all urchin larvae died.

Beach-collected fragments at 10% concentration also killed the larvae, which developed no proper shape.

Lower concentrations of beach-collected plastic did not kill the embryos, suggesting newly made plastic – which still contains high levels of additives that can leach out – are more harmful.

Although the concentrations tested in the study are rare in the oceans, they could occur after spills of plastic or in areas like the tide line where pollution accumulates.

The research team – from the Anton Dohrn Zoological Station and National Biodiversity Future Center (Italy), and the University of Exeter (UK) – previously found plastic additives can harm sea urchin larvae, and the new study develops this and reveals how this harm is caused.

“The larvae affected by plastic pollution showed developmental abnormalities including malformation of the skeleton, neural and immune cells,” said  Dr Eva Jimenez-Guri, from the Anton Dohrn Zoological Station and the University of Exeter.

“They also showed ‘radialisation’ – meaning they lacked proper symmetrical structure, and were instead largely formless and therefore unable to survive.

“In these larvae, mitochondria (the ‘powerhouses’ of cells) didn’t work properly, and they showed signs of oxidative stress, which damages cells.”

The study reveals the genetic processes behind these abnormalities.

In the case of new PVC nurdles, the damage was caused by high concentrations of zinc that leached into the water.

Larvae exposed 10% PVC pollution developed their gut outside their body, while the 5% and 1% levels also lead to fatal abnormalities.

The beach-collected samples – gathered in Cornwall, UK – did not release high levels of zinc, as most of the additives they contained would already have been released in the sea.

However, such particles are known to collect a variety of organic pollutants, and the release of these pollutants explains the abnormalities seen in this study.

“Our findings point to clear and specific detrimental effects of marine plastic pollution on the development of sea urchin larvae,” said Dr Jimenez-Guri.

“We have identified the genes that are affected by these pollutants, and we know many animal species rely on the same genes for key early stages of development.

“So it’s possible that plastic pollution could cause similar abnormalities in other species, and we are already investigating this in the next stage of our research.

“While the levels of pollution assessed in the study are not common in the ocean, marine plastic pollution continues to increase at a rapid rate – with potentially serious consequences for marine life.”

Dr Jimenez-Guri’s work was funded by a Marie Skłodowska-Curie fellowship.

The paper, published in the journal Science of the Total Environment, is entitled: “Plastic leachate-induced toxicity during sea urchin embryonic development: Insights into the molecular pathways affected by PVC.”

Screening a puppy’s DNA methylome may help predict how energetic or fearful they will be

Differences in epigenetic DNA methylation predict behavioral differences between dogs better than genetic markers

Peer-Reviewed Publication

FRONTIERS

Anyone who’s ever had a dog knows how different one can be from another. For example, they can be reserved or friendly, playful or calm, fearful or bold, and prone to bark or fetch or not. Research has shown that some of these differences are genetically determined. But even within dog breeds, where line breeding and artificial selection have led to the loss of much of the original genetic variation, the behavior of individuals can differ widely.

Now, researchers show that part of the differences in temperament – in particular  their ‘energy’ level and fear-related behaviors – depend on acquired differences in the epigenome. The epigenome, an individual’s unique set of chemical tags on DNA and its associated histone complexes (nucleosomes), can dial the expression of local genes up or down. Because the epigenome is known to depend on age, diet, exercise, training, socialization, and other environmental factors, it can impact the activity and wiring of nerve cells and thus alter behavior.

Corresponding author Dr Matteo Pellegrini, a professor at the University of California at Los Angeles, said: “Here we show that the behavior of dogs is associated with their epigenome, in particular DNA methylation. Our results open the door to using epigenetics to screen and select for desired behavioral traits in companion or service dogs.”

Behavioral questionnaire

Pellegrini and his colleagues quantified the epigenetic, genetic, and behavioral differences between 46 female and male dogs from 31 different breeds, with an age between one and 16 years. Behavioral differences were quantified based on how the owners rated their dog in the Canine Behavioral and Research Assessment Questionnaire (C-BARQ) questionnaire, a widely used standardized tool that consists of 101 questions. The researchers used a form of machine learning, Partial Least Squares (PLS) regression, to identify significant associations between genetic or epigenetic variants and behavioral traits.

The epigenome is known to differ strongly between tissues. In principle, nervous tissue would be the best place to look for associations between behavior and the epigenome. But for ease of collection, the researchers studied the epigenome of epithelial and immune cells obtained from swabs inside the dogs’ cheeks. For this proof-of-concept study, they focused on DNA methylation at 3,059 CG sites, as this is easier to quantify than other types of epigenetic marks, for example methylation or acetylation of histones.

Epigenetics are more informative than genetics for behavior

The results showed that the epigenome was a better predictor of behavior than the genotype at the sites they measured. Even within the most represented breed – Australian shepherds with 12 dogs in the sample – only two of the 930 selected Single-Locus Polymorphisms (SNP) examined were strongly associated with behavioral traits. Two SNPs on chromosome 12 could partly predict a dog’s degree of stranger-directed fear (ie, fear of unfamiliar people).

But when the authors corrected for the potential confounding effect of differences in age, differences in DNA methylation between dogs explained a far greater proportion of observed variation in energy, attention seeking, nonsocial fear, and stranger-directed fear than genetic differences did. These results imply that the epigenome helps to shape behavioral differences in dogs, even in tissues that aren’t part of the nervous system.

Surprising results

“These associations between the DNA methylation of cells in the mouth and dog behaviors were surprising, and suggests that future studies that examine DNA methylation in nerve tissues may identify similar patterns,” said Pellegrini.

“We plan to conduct much larger studies in the future, with the goal of developing biomarkers that allow us to better identify dogs with specific behavioral predispositions.”

He concluded: “Ultimately, we would be very interested in examining the epigenomes of highly specialized dogs such as guide dogs or sled dogs, to be able to assist in the selection of dogs that might be more likely to successfully complete their training.”

The first mass screening system for Covid cases has been developed with a sensitivity of 97%

A hydroalcoholic gel with a QR code enables people to access to a test that assesses their ability to identify the smell of the product and eight symptoms of the disease. Using IA techniques, it instantly evaluates the risk of having Covid.

Peer-Reviewed Publication

UNIVERSITAT ROVIRA I VIRGILI

Prototyp of the screening system for Covid cases 

IMAGE: PROTOTYP view more 

CREDIT: URV

Washing your hands with hydroalcoholic gel, smelling it and using a QR code to answer a short questionnaire. These very simple actions make up the world’s first patented mass screening system for Covid cases. A research group from the Universitat Rovira i Virgili, in conjunction with the Pere Virgili Health Research Institute, has developed this method, which is based on artificial intelligence techniques. The model instantly determines which people have a low, medium or high risk of having the disease at that moment with a sensitivity of 97%. The first prototype of this device has been installed at the entrance to the Sant Joan University Hospital in Reus and the research results have been published in the journal Scientific Reports.

Citrus fruits and apples are two of the first aromas that people with the SARS-CoV-2 virus stop detecting. Anosmia – that’s to say, the loss of the ability to detect smells – has been one of the characteristic symptoms of Covid since the beginning of the pandemic. But it is not the only one. A high temperature, a headache, a cough, discomfort and a sore throat are all signs of the coronavirus but also of a cold or flu. So, without any diagnostic test, how can you know which virus your symptoms are caused by? The system that has been patented is based on a hydroalcoholic gel to which a particular concentration of a citrus essence has been added. “We knew from the results of previous research that this aroma is one of the first that Covid sufferers cannot perceive when they lose their sense of smell,” said Eduard Llobet, a researcher from the URV’s Department of Electronic, Electrical and Automatic Engineering. “We did tests with different concentrations until we determined the one we needed,” he added.

This test was performed on approximately 500 patients who, during the second wave of the pandemic, attended the emergency department of the Sant Joan University Hospital in Reus and the primary care centres in Reus because they had Covid-like symptoms or because they were asymptomatic but had been in close contact of a positive case. They had to rub their hands with the gel and then smell them after three seconds. The result was considered negative if they recognized a citrus fruit, and positive if they couldn’t smell the gel or could not detect a citrus aroma. Once this had been done, the participants in the study had to fill in a short questionnaire with the result of the smell test and other data such as age, gender and the presence or absence of different symptoms. “We gave each symptom a diagnostic value based on our calculations, and there were eight that we regarded as statistically significant for detecting the disease,” explained Youcef Aceli, a researcher at the IISPV, who headed the research. Once the participants had given their answers were given, they were given a PCR test to check the result.

“The system we have developed is based on machine learning and the results of the questionnaire were used to generate a model that enables the mass detection of Covid cases when resources do not allow for diagnostic tests,” said Albert Fernandez, a URV researcher and developer of the algorithm based on artificial intelligence. The data ensure almost total sensitivity (97%), which makes it useful as a method for screening the population.

“The antigen tests on the market have an average sensitivity of 80%, which means that the number of false negatives is 20%. What we have developed is not a diagnostic test, but a screening system that aims to detect the maximum possible number of positives and prevent false negatives,” explained the researchers.

This device is designed to make it clear what risk people have of having Covid, which will help to interrupt the chains of transmission. “The aim is to protect the most vulnerable people and remind people with symptoms of Covid to stay at home or take extreme precautionary measures, such as wearing a mask and following the recommendations of the health authorities,” Aceli says.

The prototype, for which the IISPV and the URV have filed a European patent, is in the process of being put on the market. The aim is to have it installed in hospitals, residences, schools or public transport, so that the people who use it are aware of the risk of spreading the virus they have. The URV’s Valorization Unit and the IISPV’s Innovation and Transfer Unit have assisted the research team to protect the mass screening system.

Reference: Youcef Azeli, Alberto Fernández, Federico Capriles, Wojciech Rojewski, Vanesa Lopez-Madrid, David Sabaté-Lissner, Rosa Maria Serrano, Cristina Rey-Reñones, Marta Civit, Josefina Casellas, Abdelghani El Ouahabi-El Ouahabi, Maria Foglia-Fernández, Salvador Sarrá & Eduard Llobet. A machine learning COVID-19 mass screening based on symptoms and a simple olfactory test. Scientific Reports. DOI: https://www.nature.com/articles/s41598-022-19817-x.

Experts in insect taxonomy “threatened by extinction” reveals the first European Red List of Taxonomists

Expertise tends to be particularly poor in the countries with the richest biodiversity, while taxonomists are predominantly male and ageing

Peer-Reviewed Publication

PENSOFT PUBLISHERS

European Red List of Insect Taxonomists 

IMAGE: EUROPEAN RED LIST OF INSECT TAXONOMISTS, COVER. ILLUSTRATION: FRAGRANT BUMBLE BEE (BOMBUS FRAGRANS) BY DENITSA PENEVA. view more 

CREDIT: DENITSA PENEVA

While insect populations continue to decline, taxonomic expertise in Europe is at serious risk, confirms data obtained within the European Red List of Insect Taxonomists, a recent study commissioned by the European Union (EU). 

Scientists who specialise in the identification and discovery of insect species - also known as insect taxonomists - are declining across Europe, highlights the newly released report by CETAF, International Union for Conservation of Nature (IUCN) and Pensoft. The authors of this report represent different perspectives within biodiversity science, including natural history and research institutions, nature conservation, academia and scholarly publishing.

Despite the global significance of its taxonomic collections, Europe has been losing taxonomic expertise at such a rate that, at the moment nearly half (41.4%) of the insect orders are not covered by a sufficient number of scientists. If only EU countries are counted, the number looks only slightly more positive (34.5%). Even the four largest insect orders: beetles (Coleoptera), moths and butterflies (Lepidoptera), flies (Diptera) and wasps, bees, ants and sawflies (Hymenoptera) are only adequately ‘covered’ in a fraction of the countries.

To obtain details about the number, location and productivity of insect taxonomists, the team extracted information from thousands of scientific articles published in the last decade, queried the most important scientific databases and reached out to over fifty natural science institutions and their networks. Furthermore, a dedicated campaign reached out to individual researchers through multiple communication channels. As a result, more than 1,500 taxonomists responded by filling in a self-declaration survey to provide information about their personal and academic profile, qualification and activities. 

Then, the collected information was assessed against numerical criteria to classify the scientists into categories similar to those used by the IUCN Red List of Threatened SpeciesTM. In the European List of Insect Taxonomists, these range from Eroded Capacity (equivalent to Extinct) to Adequate Capacity (equivalent to Least Concern). The assessment was applied to the 29 insect orders (i.e. beetles, moths and butterflies, etc.) to figure out which insect groups the society, conservation practitioners and decision-makers need not be concerned at this point.

On a country level, the results showed that Czechia, Germany and Russia demonstrate the most adequate coverage of insect groups. Meanwhile, Albania, Azerbaijan, Belarus, Luxembourg, Latvia, Ireland and Malta turned out to be the ones with insufficient number of taxonomists.

In most cases, the availability of experts seems to correlate to GDP, as wealthiest countries tend to invest more in their scientific institutions. What is particularly worrying is that the lack of taxonomic expertise is more evident in the countries with the greatest species diversity. This trend may cause even more significant problems in the knowledge and conservation of these species, further aggravating the situation. Thus, the report provides further evidence about a global pattern where the countries richest in biodiversity are also the ones poorest in financial and human resources. 

The research team also reminds that it is European natural history museums that host the largest scientific collections - including insects - brought from all over the globe. As such, Europe is responsible to the world for maintaining taxonomic knowledge and building adequate expert capacity.

Other concerning trends revealed in the new report are that the community of taxonomists is also ageing and - especially in the older groups - male-dominated (82%). 

“One reason to have fewer young taxonomists could be due to limited opportunities for professional training (...), and the fact that not all professional taxonomists provide it, as a significant number of taxonomists are employed by museums and their opportunities for interaction with university students is probably not optimal.” comments Ana CasinoCETAF’s Executive Director. “Gender bias is very likely caused by multiple factors, including fewer opportunities for women to be exposed to taxonomic research and gain an interest, unequal offer of career opportunities and hiring decisions,” according to the authors. “A fair-playing field for all genders will be crucial to address these shortcomings and close the gap.”

***

The European Red List of Taxonomists concludes with practical recommendations concerning strategic, science and societal priorities, addressed to specific decision-makers. The authors give practical examples and potential solutions in support of their call to action.

For instance, in order to develop targeted and sustainable funding mechanisms to support taxonomy, they propose the launch of regular targeted Horizon Europe calls to study important insect groups for which taxonomic capacity has been identified to be at a particularly high risk of erosion.

To address specific gaps in expertise - such as the ones reported in the publication from Romania - a country known for its rich insect diversity, yet poor in taxonomic expertise - the consortium proposes the establishment of a natural history museum or entomological research institute that is well-fitted to serve as a taxonomic facility.

Amongst the scientific recommendations, the authors propose measures to ensure better recognition of taxonomic work at a multidisciplinary level. The scientific community, including disciplines that use taxonomic research, such as molecular biology, medicine and agriculture - need to embrace universal standards and rigorous conduct for the correct citation of scientific publications by insect taxonomists.

Societal engagement is another important call. “It is pivotal to widely raise awareness of the value and impact of taxonomy and the work of taxonomists. We must motivate young generations to join the scientific community” points Prof. Lyubomir Penev, Managing Director of Pensoft.

***

Understanding taxonomy is a key to understanding the extinction risk of speciesIf we strategically target the gaps in expert capacity that this European Red List identifies, we can better protect biodiversity and support the well-being and livelihoods of our societies. With the climate crisis at hand, there is no time left to waste,” added David Allen from the IUCN Red List team.

As a dedicated supporter of the IUCN Red List, I am inspired by this call to strengthen the capacity, guided by evidence and proven scientific methods. However, Europe has much more scientific capacity than most biodiversity-rich regions of the world. So, what this report particularly highlights is the need for massively increasing investment in scientific discovery, and building taxonomic expertise, around the world,” said Jon Paul Rodríguez, Chair of the IUCN Species Survival Commission

***

The results of the study will be presented at the UN Biodiversity Conference (COP-15) on 15 December within a side event (#4788) dedicated to the role of taxonomy for the implementation and monitoring of the Post-2020 Biodiversity Framework. 

***

Follow and join the conversation on Twitter using the #RedListTaxonomists hashtag. 

 

Additional information:

CETAF is the European organisation of Natural History Museums, Botanic Gardens and Research Centers with their associated natural science collections comprising 74 of the largest taxonomic institutions from 24 European countries (19 EU, 2 EEA and 3 non-EU), gathering expertise of more than 5,000 researchers. Their collections contain a wide range of specimens including animals, plants, fungi and rocks, and genetic resources which are used for scientific research and exhibitions. CETAF aims to promote training, research collaborations and understanding in taxonomy and systematic biology as well as to facilitate access to our natural heritage by sharing the information derived from the collections. Follow CETAF on TwitterFacebook and LinkedIn

IUCN (the International Union for Conservation of Nature) is a membership Union composed of both government and civil society organisations. It harnesses the experience, resources and reach of its more than 1,400 Member organisations and the input of more than 15,000 experts. IUCN is the global authority on the status of the natural world and the measures needed to safeguard it. 

Through its Species Survival Commission (SSC), IUCN assists societies to conserve biodiversity by building knowledge on the status and threats to species, providing advice, developing policies and guidelines, facilitating conservation planning, and catalysing conservation action. Follow IUCN on TwitterFacebook and LinkedIn.

Pensoft is an independent academic publishing company and technology provider, well known worldwide for its novel cutting-edge publishing tools, workflows and methods for text and data publishing of journals, books and conference materials. Through its Research and Technical Development department, the company is involved in various research and technology projects. Founded in 1992 "by scientists, for scientists" and initially focusing on book publishing, Pensoft is now a leading publisher of innovative open access journals in taxonomy and biodiversity science. Follow Pensoft on TwitterFacebook and LinkedIn.


Contacts:

Iva Boyadzhieva, Pensoft, Email: i.boyadzhieva@pensoft.net;

Alessandro Marchi, CETAF, Email: amarchi@naturalsciences.be;

Harriet Brooker, IUCN Global Communications, Email: press@iucn.org;

Aritzaith Rodríguez, IUCN SSC, Email: aritzaith.rodriguez@ssc.iucn.org,

Harnessing smartphones to track how people use green spaces

Anonymized GPS data could aid efforts to balance recreation and conservation in urban areas

Peer-Reviewed Publication

PLOS

Harnessing smartphones to track how people use green spaces 

IMAGE: A HIKER WALKING ALONG A TRAIL ON A SUMMER DAY IN HILTON FALLS CONSERVATION AREA. view more 

CREDIT: CONSERVATION HALTON, CC-BY 4.0, HTTPS://CREATIVECOMMONS.ORG/LICENSES/BY/4.0/)

A new study demonstrates how anonymized GPS data from people’s smartphones can be used to monitor the public’s use of parks and other green spaces in urban areas, which could help inform their management. Alessandro Filazzola of ApexRMS and the University of Toronto, Mississauga, Canada, and colleagues present these findings in the open-access journal PLOS Computational Biology on December 15, 2022.

Parks and other green spaces in urban areas perform several key functions, including promotion of human physical and mental health, preservation of ecosystem biodiversity, and services such as stormwater management and heat reduction. People’s interactions with green spaces influence these functions, but it is challenging to capture human activity at a fine enough resolution to inform green space management. Anonymized GPS data from people’s smartphones could help address this challenge.

To demonstrate such an approach, Filazzola and colleagues analyzed anonymized smartphone data that captured people’s visits to 53 green spaces in the greater Toronto area in Canada, including parks, trail systems, and areas closed to the public for conservation purposes.

They found that the GPS data did indeed capture insights about people’s use of these green spaces, showing, for instance, that mobile device activity was strongly correlated with data on reservations made by people to access parks. The data also revealed which areas within green spaces had more or less human activity, with established trails being particularly popular. In addition, greater human presence was linked to certain types of land cover, such as rock formations, as well as certain tree species.

These findings highlight the potential for anonymized GPS smartphone data to help inform management of green spaces, especially as cities grow worldwide. Such efforts could optimize the benefits of green spaces for people while also preserving biodiversity.

The researchers note several challenges to this approach, such as some people’s tendency to disconnect from the mobile devices when visiting green spaces and the difficulty of distinguishing between a smart phone located within a green space versus passing in a car just outside the perimeter. Future research could address these issues and refine the methodology.

The authors add: “Access to parks is important for city residents for recreation, connecting to nature, and socialization, but it’s challenging to understand how people use these green spaces. Our study is using anonymized mobility data to help shed light on relationship between people and nature in parks.”

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In your coverage, please use this URL to provide access to the freely available article in PLOS Computational Biologyhttps://journals.plos.org/ploscompbiol/article?id=10.1371/journal.pcbi.1010725

Citation: Filazzola A, Xie G, Barrett K, Dunn A, Johnson MTJ, MacIvor JS (2022) Using smartphone-GPS data to quantify human activity in green spaces. PLoS Comput Biol 18(12): e1010725. https://doi.org/10.1371/journal.pcbi.1010725

Author Countries: Canada

Funding: This research was funded by a Post-Doctoral Fellowship awarded to AF by the Center for Urban Environments and School of Cities at the University of Toronto, Canada. GX was funded by an Ontario Graduate Scholarship, a Center for Environmental Research in the Anthropocene Graduate Fellowship, and NSERC CREATE funding (# 401276521) awarded to JSM. The funders had no role in study design, data collection and analysis, decision to publish, or preparation of the manuscript.