Wednesday, January 15, 2025

 

Songbirds socialize on the wing during migration, new study says





University of Illinois College of Agricultural, Consumer and Environmental Sciences
American Redstart 

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New research shows songbird migration may be driven by more than innate patterns and memory. Recorded flight calls reveal probable social associations between species making the nighttime trek. Here, an American Redstart streaks across the sky.

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Credit: Andrew Dreelin




URBANA, Ill. — The night sky teems with migrating songbirds, aloft in their millions following routes etched in evolutionary time. But those flight paths may not be entirely innate, according to new research led by the University of Illinois Urbana-Champaign. Evidence from over 18,300 hours of recorded flight calls suggests songbirds may “talk” to other species as they migrate, forming social connections and — just maybe — exchanging information about the journey.

“We can’t be sure what they’re saying, but birds might broadcast calls during flight to signal their species, age, and sex. And we can certainly speculate that these flight calls could relate to navigation or finding suitable stopover habitat,” said lead study author Benjamin Van Doren, assistant professor in the Department of Natural Resources and Environmental Sciences, part of the College of Agricultural, Consumer and Environmental Sciences at Illinois. Van Doren began this research at the Cornell Lab of Ornithology.

Work from last year by the study’s co-authors at the University of Maryland Center for Environmental Science, Appalachian Laboratory suggested birds “buddy up” with other species at stopover sites during migration, but there was no evidence until now that different songbird species pair up or communicate vocally on the wing. Although Van Doren believes innate patterning and memory are still important drivers of migration behaviors, he says it’s time to rethink songbird migration through a social lens.

“In recent years, there has been an increasing recognition of the importance of social information in bird migration, but scientists have mainly documented this in species that travel during the day or in family groups,” he said. “The social environment also seems to be important in species like hawks and storks that form huge aggregations during their daytime migrations. Young birds learn behaviors from observing other birds and how they navigate — and not necessarily from family.” 

But those visual cues go dark at night, when most songbirds travel. That’s what led Van Doren to wonder about other social cues. Fortunately, he had access to acoustic recordings of autumn nocturnal bird migrations from 26 sites over three years in eastern North America. 

“These nocturnal acoustic recordings are really the only window onto this unseen but absolutely massive flow of birds — hundreds of millions aloft over the U.S. on any given night during migration,” Van Doren said. “It's something people aren’t usually aware of because it happens when we’re sleeping.”

The 18,300-hour acoustic record would have been a processing and analytical nightmare before AI. Now, a machine learning tool allowed Van Doren’s team to quickly detect the signature flight calls of 27 species, including 25 well-sampled songbirds.

After identifying species, the team measured how often certain calls co-occurred in time, testing intervals of 15, 30, and 60 seconds. Regardless of the time interval, they found stronger associations between species than expected by chance alone.

Looking to explain these associations, the found species’ wing lengths and the similarity of their calls were the most important factors. In contrast, birds that “buddy up” during stopovers weren’t maintaining those relationships in the air, and they weren’t necessarily flying with closely related species or birds that shared their preferences for specific habitats.

“Species with similar wing sizes were more likely to associate, and wing length is directly linked to flight speed. If you imagine two species flying at similar speeds because they have similar wings, then it's much easier for them to stick together,” Van Doren said. “As for vocalizations, it is possible that species’ calls have converged over time because of this social link or that species that happen to give similar calls are simply more likely to gravitate towards each other.”

Van Doren notes that 25 is a small subset of the songbird species migrating at night, some of which don’t vocalize at all during flight. He and his team plan to follow up with more research, including attaching tiny microphones to individual birds and tracking their “conversations” with flight partners throughout their migrations. 

Still, these preliminary results raise many intriguing, if speculative, notions. For example, short-lived songbird species who can’t rely on their parents to show them the way may instead rely on social ties with others to make the trek. Also, the precipitous loss of bird biodiversity with climate change and habitat loss may jeopardize partner species that co-migrate. 

“This study really calls into question the long-held idea that songbirds migrate alone, solely following their own instincts,” Van Doren said. “Learning more about the consequences of these social connections — not only for migration, but also for other aspects of their biology — will be important to inform and manage the risks they face in a changing world.”

The study, “Social associations across species during nocturnal bird migration,” will appear in Current Biology on Jan. 15 and represents a collaboration between the University of Illinois  Urbana-Champaign, the Cornell Lab of Ornithology, the University of Maryland Center for Environmental Science, Appalachian Laboratory, the University of LeedsDurham University, and Actions@EBMF. The research was supported by an Amazon Cloud Credits for Research grant, the Cornell Lab of Ornithology, the Cornell Presidential Postdoctoral Fellowship, and the National Science Foundation [award no. 2146052]. Additional funding was provided by NERC (NE/V013483/1) and WildAI (C-2023-00057).

 

Nord Stream methane spread across the southern Baltic Sea



University of Gothenburg
Spread of methane in Baltic sea 

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Map over the maximum concentration of methane in the southern Baltic.

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Credit: Illustration: Martin Mohrmann/VOTO




Methane from the destroyed Nord Stream pipelines spread over a large part of the southern Baltic Sea and remained for several months.


This is according to a new study by researchers from the University of Gothenburg and the Voice of the Ocean research foundation.

Much of the methane gas from the Nord Stream leak rose directly to the sea surface and into the atmosphere. But some methane remained below the surface and was dispersed by ocean currents.

“The results of our measurements show that methane spread to large parts of the southern Baltic Sea, from the coast of Danish Zealand in the west, to the Polish Gulf of Gdansk in the east,” says Martin Mohrmann, a researcher at Voice of the Ocean, VOTO.

High-resolution measurements

The Voice of the Ocean Foundation deployed an underwater robot, known as a glider, just outside the exclusion zone around the leaks. This instrument allowed the researchers to measure methane concentrations over a large area, all the way from the surface to the depths. In addition, they continued to measure using the glider for three months after the spill. In the end, they had collected the most high-resolution measurements from the immediate area around the leaks, giving great confidence in their research results.

“To get the most robust estimations, we combined observations from the gliders with surface observations collected by our colleagues at the German research institute IOW from a ferry. It was gratifying to see how well it matched the results from University of Gothenburg’s research vessel’s expedition to the Nord Stream leak area too. All this together makes us feel confident that we have a really good picture of how the methane spread in the Baltic Sea, both across time and space,” says Bastien Queste, oceanographer at the University of Gothenburg.

1,000 times higher

In the initial period following the pipeline explosion at the end of September 2022, methane levels in the waters were sometimes 1,000 times above normal. In some areas, abnormal concentrations of methane were measured several months after the release, before it was diluted, consumed by bacteria or escaped to the atmosphere.

“Our gliders, together with ocean modelling for the southern Baltic Sea, have given us a good picture of the areas affected by the spill. In total, we estimate that over 14 per cent of the entire Baltic Sea was exposed to methane levels that were at least five times above normal,” says Martin Mohrmann.

Marine protected areas affected

The results of the study are published in Nature Communications, along with two other studies that have mapped the impact of the Nord Stream emission on the atmosphere. The researchers from VOTO and the University of Gothenburg have used their measurements to create a robust model of how the methane was dispersed in the water. The ocean currents transported the methane to 23 marine protected areas.

“We now know the areas where the methane emission may have had an impact. It will be easier to determine whether a future problem in the Baltic Sea ecosystems, for example, is related to the Nord Stream leak or not,” says Bastien Queste.

Scientific article in Nature CommunicationsNord Stream methane leaks spread across 14% of Baltic waters

Related studies:

Deutsches Zentrum für Luft- und Raumfahrt: Airborne observations reveal the fate of the methane from the Nord Stream pipelines

UNEP, United Nations Environmental programme: Methane emissions from the Nord Stream subsea pipeline leaks

 

Facts VOTO:

The Voice of the Ocean Foundation aims to raise awareness, spark curiosity, and make knowledge about the ocean accessible. Since its start in 2019, the Foundation has strived to promote a broader understanding of the ocean by spreading knowledge about its diverse nature, culture, and history and efficiently communicating relevant science. The Foundation works towards a future where public understanding of the ocean as a system and its history leads to sustainable interaction between humans and the ocean.

Voice of the Oceans website: https://voiceoftheocean.org/


An underwater robot, known as a glider, allowed the researchers to measure methane concentrations in the waters around the Nord stream spill. 

Credit

Aleksandra Mazur/VOTO

 

AI-designed proteins neutralize snake toxins



A new study in Nature by this year's Nobel Laureate in Chemistry reveals a possible game-changer in snakebite treatment. Researchers have created new proteins that neutralize lethal toxins found in snake venom



Technical University of Denmark

AI-designed proteins completely neutralise snake toxins 

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Illustration: University of Washington.

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Credit: University of Washington.



A new study in Nature by last year's Nobel Laureate in Chemistry reveals a possible game-changer in snakebite treatment. Researchers have created new proteins that neutralise lethal toxins found in snake venom, potentially offering a safer and more effective alternative to traditional antivenoms.

According to the WHO, venomous snakebites affect between 1,8 and 2,7 million people each year, leading to roughly 100,000 annual deaths and three times as many permanent disabilities, including lost limbs. Most injuries happen in Africa, Asia, and Latin America, where weak health systems aggravate the issue. 

Currently, the only antivenoms used to treat snakebite victims are derived from animal plasma and often come with high costs, limited efficacy, and adverse side effects. Venoms also differ widely across snake species, necessitating custom treatments in different parts of the world. In recent years, however, scientists have gained a deeper understanding of snake toxins and developed new ways to combat their effects. One such development is published 15 January in Nature

A team led by 2024 Nobel Laureate in Chemistry David Baker from the University of Washington School of Medicine and Timothy Patrick Jenkins from DTU (the Technical University of Denmark) used deep learning tools to design new proteins that bind to and neutralise toxins from deadly cobras. 

80-100% survival rate in mice

 The study focuses on an important class of snake proteins called three-finger toxins, which are often the reason antivenoms based on immunised animals fail. 

While not yet protecting against full snake venom — which is a complex mixture of different toxins unique to each snake species—the AI-generated molecules provide full protection from lethal doses of three-finger toxins in mice: 80-100% survival rate, depending on the exact dose, toxin and designed protein. 

These toxins tend to evade the immune system, rendering plasma-derived treatments ineffective. This research thus demonstrates that AI-accelerated protein design can be used to neutralise harmful proteins that have otherwise proven difficult to combat. 

“I believe protein design will help make snake bite treatments more accessible for people in developing countries,” said Susana Vazquez Torres, lead author of the study and a researcher in Baker’s lab at the Institute for Protein Design at UW Medicine. 

“The antitoxins we’ve created are easy to discover using only computational methods. They’re also cheap to produce and robust in laboratory tests,” said Baker.

The scientists reasoned that creating proteins that stick to and disable snake toxins could create several advantages over traditional treatments. The new antitoxins can be manufactured using microbes, circumventing traditional animal immunisation and potentially slashing production costs. 

But there are more advantages, explains Timothy Patrick Jenkins, an Associate Professor at DTU Bioengineering

“The most remarkable result is the impressive neurotoxin protection they afforded to mice. However, one added benefit of these designed proteins is that they are small—so small, in fact, that we expect them to penetrate tissue better and potentially neutralise the toxins faster than current antibodies. And because the proteins were created entirely on the computer using AI-powered software, we dramatically cut the time spent in the discovery phase. ”

Novel approach to drug development

Although these results are encouraging, the team stresses that traditional antivenoms will remain the cornerstone in treating snakebites for the foreseeable future. The new computer-designed antitoxins could initially become supplements or fortifying agents that improve the effectiveness of existing treatments until standalone next-generation therapies are approved. 

According to the scientists, the drug development approach described in this study could also be useful for many other diseases that lack treatments today, including certain viral infections. Because protein design generally requires fewer resources than traditional lab-based drug discovery methods, there is also the potential to generate new but less costly medicines for more common diseases using a similar approach.

“We didn’t need to perform several rounds of laboratory experiments to find antitoxins that performed well — the design software is so good now that we only needed to test a few molecules,” said Baker. “Beyond treating snake bites, protein design will help simplify drug discovery, particularly in resource-limited settings. By lowering costs and resource requirements for potent new medicines, we’re taking considerable steps toward a future where everyone can get the treatments they deserve.”