Tuesday, February 20, 2024

 

Ancient genomes reveal Down Syndrome in past societies


Burials show that children with Down Syndrome and Edwards Syndrome were recognized as members of their communities


Peer-Reviewed Publication

MAX PLANCK INSTITUTE FOR EVOLUTIONARY ANTHROPOLOGY

Remains of individual “CRU001” 

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REMAINS OF INDIVIDUAL “CRU001”, A BOY WHO DIED AT OR SHORTLY BEFORE BIRTH AND WAS BURIED IN ALTO DE LA CRUZ.

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CREDIT: © GOBIERNO DE NAVARRA/J.L. LARRION




For many years, researchers at MPI-EVA have been collecting and analyzing ancient DNA from humans who lived during the past tens of thousands of years. Analyzing these data has allowed the researchers to trace the movement and mixing of people, and even to uncover ancient pathogens that affected their lives. However, a systematic study of uncommon genetic conditions had not been attempted. One of those uncommon conditions, known as Down Syndrome, affects nowadays around one in 1,000 births.

To their surprise, Adam “Ben” Rohrlach and colleagues identified six individuals with an unusually high number of DNA sequences from Chromosome 21 that could only be explained by an additional copy of Chromosome 21. One case from a church graveyard in Finland was dated to the 17th to 18th century. The remaining five individuals were much older: dating to between 5,000 and 2,500 years before present, they were found at Bronze Age sites in Greece and Bulgaria, and Iron Age sites in Spain. In all cases, the researchers were able to obtain a wealth of additional information about the remains and the burials.

Burials within settlements and with grave goods

While individuals with Down Syndrome can live a long life today, often with the help of modern medicine, this was not the case in the past. Indeed, age estimates from skeletal remains showed that all six individuals died at a very young age, with only one child reaching around one year of age. The five prehistoric burials were all located within settlements and in some cases accompanied by special items such as coloured bead necklaces, bronze rings or sea-shells. “These burials seem to show us that these individuals were cared for and appreciated as part of their ancient societies,” says Rohrlach, the lead author of the study.

Although the study was aimed at finding cases of Down Syndrome, the researchers also discovered an individual with a different condition. Among the approximately 10,000 tested DNA samples, one individual had an unexpectedly high fraction of ancient DNA sequences from Chromosome 18 that showed that she carried three copies of this chromosome. Three copies of Chromosome 18 are known to cause Edwards Syndrome, a condition associated with more severe health issues than Down syndrome. With an incidence of less than one case in 3,000 births, Edwards Syndrome also occurs much less often than Down Syndrome. This find, too, was made at one of the Spanish Iron Age sites, leaving the researchers with a mystery to solve. “At the moment, we cannot say why we find so many cases at these sites,” says Roberto Risch, an archaeologist of the Universitat Autònoma de Barcelona working on intramural funerary rites, “but we know that they belonged to the few children who received the privilege to be buried inside the houses after death. This already is a hint that they were perceived as special babies.”

As the number of DNA samples from ancient individuals continues to increase, the authors plan to further expand their research in the future. “What we would like to learn is how ancient societies reacted to individuals that may have needed a helping hand or were simply a bit different,” says Kay Prüfer, who coordinated the sequence analysis.

Challenge Announcement: Global Initiative to Digitalize Scents by the Digital Olfaction Society Revolutionary Scent Digitalization Challenge 2025: Capturing Aromas to Reproduce Anywhere



Meeting Announcement

MITOCHONDRIA-MICROBIOTA TASK FORCE

DOS 2025 Worldwide Scent Digitalization Challenge: Capturing Aromas to Reproduce Anywhere 

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DOS CHALLENGE 2025: CAPTURING ODORS FROM ONE CITY, CONVERTING THEM INTO DIGITAL DATA, AND THEN TRANSMITTING AND RECONSTITUTING THEM IN ANOTHER PLACE.

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CREDIT: DIGITAL OLFACTION SOCIETY (DOS)




Tokyo, The Digital Olfaction Society (DOS) announces a global initiative for 2025, aiming to digitize and transmit scents from various locations around the world for reproduction in Tokyo. This project intends to capture a wide range of fragrances representing the cultural diversity of the globe, leading to a significant development in Tokyo.

Invitation for Worldwide Participation

DOS invites teams from around the world to participate in this initiative. Whether located in major cities such as Berlin, New York, Dubai, or any place with a distinctive aroma, contributions are essential. The task involves digitizing a scent, sound, or image that represents the cultural essence of a location.

A team in Tokyo will work to accurately recreate these digital signatures, aiming to develop a device that accurately reflects each aroma's character. The reveal of this technology in 2025 is anticipated to be a landmark in the advancement of olfactory digitization.

Marvin Edeas, founder of DOS and chairman of the Scientific Board, states: "The goal is to advance this concept, making it possible to transform any scent source into digital media for everyday use. The objective is to develop devices that can record smells, convert them into digital data, and transmit and reproduce them as desired." This statement highlights the project's aim to integrate olfactory experiences seamlessly into digital mediums.

About the Digital Olfaction Society (DOS).

How to Apply to the DOS 2025 Tokyo – Worldwide Challenge

Details on the 8th World Congress of DOS which will be held this december in Tokyo

Additionally, DOS announces the 8th World Congress, scheduled in Tokyo, Japan, on December 5-6, 2024. The congress will focus on the intersection of scent and digital technology, furthering scientific and industrial progress.

Congress Highlights:

Day 1, December 5, 2024: Focus on advancements in olfaction science and scent-based diagnosis and treatment innovations.
Day 2, December 6, 2024: Overview of the current state and future of digital olfaction, including a showcase of the latest technologies.

You can visit the Digital Olfaction Society to learn more about the conference agenda.

 SPACE

The Radcliffe Wave is waving


Astronomers report oscillation of our giant, gaseous neighbor


Peer-Reviewed Publication

HARVARD UNIVERSITY

wave1_black_border 

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THE RADCLIFFE WAVE NEXT TO OUR SUN (YELLOW DOT), INSIDE A CARTOON MODEL OF THE MILKY WAY. BLUE DOTS ARE CLUSTERS OF BABY STARS. THE WHITE LINE IS A THEORETICAL MODEL BY RALF KONIETZKA AND COLLABORATORS THAT EXPLAINS THE CURRENT SHAPE AND MOTION OF THE WAVE. THE MAGENTA AND GREEN LINES SHOW HOW THE WAVE WILL MOVE IN THE FUTURE. 

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CREDIT: RALF KONIETZKA, ALYSSA GOODMAN, AND WORLDWIDE TELESCOPE




A few years ago, astronomers uncovered one of the Milky Way’s greatest secrets:  an enormous, wave-shaped chain of gaseous clouds in our sun’s backyard, giving birth to clusters of stars along the spiral arm of the galaxy we call home.

Naming this astonishing new structure the Radcliffe Wave, in honor of the Harvard Radcliffe Institute, where the undulation was originally discovered, the team now reports in Nature that the Radcliffe Wave not only looks like a wave, but also moves like one – oscillating through space-time much like “the wave” moving through a stadium full of fans.

Ralf Konietzka, the paper’s lead author and Ph.D. student at Harvard’s Kenneth C. Griffin Graduate School of Arts and Sciences, explains, “By using the motion of baby stars born in the gaseous clouds along the Radcliffe Wave, we can trace the motion of their natal gas to show that the Radcliffe Wave is actually waving.”

Back in 2018, when University of Vienna professor João Alves was a fellow at Harvard Radcliffe Institute, he worked with Center for Astrophysics researcher Catherine Zucker – then a Ph.D. student at Harvard – and Alyssa Goodman, Robert Wheeler Willson Professor of Applied Astronomy, to map out the 3D positions of the stellar nurseries in the sun’s galactic neighborhood. By combining brand-new data from the European Space Agency’s Gaia mission with the data-intensive “3D Dust Mapping” technique – pioneered by Harvard professor Doug Finkbeiner and his team – they noticed a pattern emerging, leading to the discovery of the Radcliffe Wave in 2020.

“It’s the largest coherent structure that we know of, and it’s really, really close to us,” said Zucker, who describes the collaboration’s work in a related Sky and Telescope article. “It’s been there the whole time. We just didn’t know about it, because we couldn’t build these high-resolution models of the distribution of gaseous clouds near the sun, in 3D.”

The 2020 3D dust map clearly showed that the Radcliffe Wave existed, but no measurements available then were good enough to see if the wave was moving. But in 2022, using a newer release of Gaia data, Alves’ group assigned 3D motions to the young star clusters in the Radcliffe Wave. With the clusters’ positions and motions in hand, Konietzka, Goodman, Zucker and their collaborators were able to determine that the entire Radcliffe Wave is indeed waving, moving like what physicists call a "traveling wave."

A traveling wave is the same phenomenon we see in a sports stadium when people stand up and sit down in sequence to “do the wave.” Likewise, the star clusters along the Radcliffe Wave move up and down, creating a pattern that travels through our galactic backyard.

Konietzka continued, “Similar to how fans in a stadium are being pulled back to their seats by the Earth's gravity, the Radcliffe Wave oscillates due to the gravity of the Milky Way.” 

Understanding the behavior of this 9,000 light year-long, gargantuan structure in our galactic backyard, just 500 light-years away from the sun at its closest point, allows researchers to now turn their attention to even more challenging questions. No one yet knows what caused the Radcliffe Wave or why it moves the way it does.

“Now we can go and test all these different theories for why the wave formed in the first place," Zucker said.

“Those theories range from explosions of massive stars, called supernovae, to out-of-galaxy disturbances, like a dwarf satellite galaxy colliding with our Milky Way”, Konietzka added.  

The Nature article also includes a calculation on how much dark matter might be contributing to the gravity responsible for the wave’s motion. 

"It turns out that no significant dark matter is needed to explain the motion we observe," Konietzka said. “The gravity of ordinary matter alone is enough to drive the waving of the wave."

In addition, the discovery of the oscillation raises new questions about the preponderance of these waves both across the Milky Way and other galaxies. Since the Radcliffe Wave appears to form the backbone of the nearest spiral arm in the Milky Way, the waving of the wave could imply that spiral arms of galaxies oscillate in general, making galaxies even more dynamic than previously thought.

“The question is, what caused the displacement giving rise to the waving we see?” Goodman said. “And does it happen all over the galaxy? In all galaxies? Does it happen occasionally? Does it happen all the time?”

The National Science Foundation, NASA, ESA, and the European Research Council  (ERC) Advanced Grant ISM-FLOW supported this work. 

wave_video [VIDEO] | 

 

Study shows UK offshores emissions through used vehicle exports


Peer-Reviewed Publication

UNIVERSITY OF OXFORD

Figure 1 

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POLLUTION GENERATED PER KILOMETRE BY USED VEHICLE FLEETS. EXPORTED CARS (ORANGE) GENERATE AT LEAST 13-24% MORE CO2 PER KILOMETRE (A), SIMILAR AVERAGE BUT (THROUGH OVERDISPERSION) HIGHER MEDIAN FINE PARTICULATE MATTER POLLUTION (B), AND (C) AT LEAST 53% MORE NITROGEN OXIDES PER KILOMETRE THAN SCRAPPED (GREEN) OR ON-ROAD (BLUE) VEHICLE FLEETS. BOTH EXPORTED CAR AND LGVS FLEETS ALSO HAVE LARGER OBSERVED ENGINE CAPACITIES (D) AND WORSE FUEL EFFICIENCY (E) DESPITE BEING SIMILAR AGES TO ON-ROAD FLEETS AND MUCH YOUNGER THAN CONTEMPORARY SCRAPPED VEHICLES (F). BOXES SHOW INTERQUARTILE RANGE (IQR), WHISKERS ARE 1.5X IQR, SAMPLE SIZE (MILLIONS) ON UPPERMOST X-AXES, SUMMARY DATA SUPPLIED IN FIGSHARE REPOSITORY.

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CREDIT: NATURE




Published today in Nature Climate Change, the study found that exported used vehicles generate at least 13-53% more emissions per mile than those that are scrapped or on the road in Great Britain. The researchers used mandatory annual vehicle inspections – known as MOT tests – of all 65 million used vehicles on British roads between 2005 and 2021 to compare the pollution and emissions intensity of vehicles exported to those scrapped, destroyed, or driven in Great Britain.

The data revealed substantially higher rates of carbon dioxide and pollution generation in exported vehicles. Amongst the seven million vehicles legally exported from Great Britain, exported used cars generated at least 13% more carbon dioxide per kilometre than scrapped cars, and 17% more than used vehicles on British roads. Exported vehicles were also 3.3 miles per gallon worse on fuel efficiency than those sent to the scrapyard.

Lead author Dr Saul Newman, Research Associate at the Leverhulme Centre for Demographic Science and Demographic Science Unit at Oxford Population Health said ‘Our study reveals that the UK, a leading global exporter of used vehicles with high vehicle emissions standards inside its own borders, offshores vehicle emissions to lower-income countries who are already suffering the most from climate change.’

Over half of all vehicle exports to low and middle-income countries originate from the EU and UK, with virtually all remaining trade coming from Japan and the United States. Whilst these countries maintain high emission standards domestically, almost all countries that receive their vehicle exports have no emission standards of their own.

Significantly higher nitrogen oxide rates – an air pollutant that causes millions of deaths each year and can be effectively avoided when emission standards are enforced – were emitted per kilometre from exported than scrapped cars. It was striking that almost all exported diesel cars (98%) failed the European Union’s EURO-6 diesel emissions standards for nitrogen oxide and carbon monoxide, and most (83%) were predicted to fail the carbon dioxide standards. The study also highlights the issues surrounding the manipulation of emissions testing data which adds to the challenges of measuring emissions.

Dr Saul Newman said ‘This study shows that we have been exporting dirtier cars than those we send to the scrapyard. This presents an enormous opportunity to clean up emissions in lower-income countries, simply by applying our own domestic emission standards to vehicles sent offshore.’

The study calls for the UK’s world-leading vehicle emissions standards to be applied to all exported vehicles which would see cleaner instead of dirtier vehicles sent to lower-income countries. Such measures would reduce economic burdens of vehicle ownership as cleaner vehicles require lower ongoing maintenance and fuel costs, and align with increasing cleaner air and climate action calls.  

Professor Melinda Mills, Director of the Leverhulme Centre for Demographic Science and Demographic Science Unit concludes ‘This study uses existing government data in a novel way to uncover considerable offshoring of vehicle emissions to low- and middle-income countries. The findings are striking and call for an evaluation of existing policies and practices around car pollution and exported vehicles.’

This forms one of many upcoming studies by the Leverhulme Centre for Demographic Science and Demographic Science Unit on our Geospatial and Environmental Demography theme, and issues and solutions of growing vehicle emissions globally.

 

Editor’s notes

The study, ‘Offshoring Emissions through Used Vehicle Exports', appears in Nature Climate Changehttps://www.nature.com/articles/s41558-024-01943-1

For more information and interviews, please contact the Leverhulme Centre for Demographic Science media team (LCDS.Media@demography.ox.ac.uk) and Dr Saul Newman (Saul.Newman@demography.ox.ac.uk).

 

About the Leverhulme Centre for Demographic Science

Based at Oxford Population Health, the Leverhulme Centre for Demographic Science and Demographic Science Unit are at the forefront of demographic research, disrupting and realigning demography for the benefit of populations around the world. Focussing on inequality, family, biosocial, digital, geospatial, and computational research, our researchers use new types of data, methods and unconventional approaches to tackle the most challenging demographic and population problems of our time.

 

Export of consistently higher-emitting vehicles from Great Britain. Exported vehicles (orange) are consistently more polluting (a) than contemporary scrapped (green) and used on-road (blue) vehicles. Cleaner choices and improving standards have lowered exported emissions, after considerable delay, but the gap between exported and scrapped fleets persists (b) and is growing post-pandemic. Scrapped vehicles are cleaner than exports across 5,874 (95%) of our 6,145 observed postcode regions (2005-2021 inclusive) covering every community in Britain (c). Grey regions have insufficient data or no inspection sites. Orange line (b) shows locally weighted smoothed spline; note non-zero y-axis (a) to emphasise variation.

CREDIT

Nature


 

Pesticides found in kale but at low risk levels


Novel chemical analysis provides insight into safety of Maryland-grown greens

Peer-Reviewed Publication

JOHNS HOPKINS UNIVERSITY

Kale growing at a farm outside Baltimore 

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KALE GROWING AT A FARM OUTSIDE BALTIMORE.

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CREDIT: KEEVE NACHMAN/JOHNS HOPKINS UNIVERSITY




Kale fans can rest easy knowing pesticides used to grow the hearty greens are unlikely to end up in their salads or smoothies, a new chemical analysis of the superfood suggests. 

Conducting novel tests that provide the most complete picture to date of a crop’s chemical makeup, the Johns Hopkins–led team found several pesticides and compounds in Maryland-farmed kale—but no cause for alarm.

“We do see minute traces of pesticides in the kale, but the levels we found are so much lower than the amounts that would be concerning,” said lead author Carsten Prasse, a Johns Hopkins University assistant professor of environmental health and engineering who studies chemical contaminants. “We took great care to examine exposures to even the most vulnerable among us, including pregnant females and infants, and found no evidence of concern in our samples.”

The findings, newly published in the journal Environmental Sciences & Technology, will help researchers and regulators identify health risks associated with eating other farm-raised fruits and vegetables. 

Prasse’s team screened kale from six small farms in Maryland—two urban farms in Baltimore and four rural farms outside the city. The farms used either conventional pesticides or certified organic ones.

The team found six pesticides and related compounds in the kale, including traces of pesticides not used by the farms. The kale also contained herbicides and remnants of DEET, a potent insect repellent famous for melting holes in synthetic fabrics, though not in quantities that would harm anyone according to Environmental Protection Agency standards. 

Although the researchers were focused on pesticides, they also wanted to know what else could be in the kale.

They used specialized analytical chemistry techniques capable of screening for many thousands of different chemicals in a single sample. They found evidence the kale could contain as many as 87 other compounds, some with links to negative health effects, though further work is needed to determine whether they pose health risks. 

The presence of the compounds themselves is not necessarily cause for alarm, the researchers said. The potential health danger is more about how much, how long, and how often a person is exposed to them. 

“If we want to assess the potential risks associated with eating a certain food, we need to cast a wider net to identify and assess chemicals even when we can’t anticipate what they are or where they would be coming from,” said co-author Keeve Nachman, an associate professor of environmental health and engineering. “Using these novel methods for screening contaminants, we were able to look beyond the usual suspects for chemicals we might not have found otherwise.”  

Fruits and vegetables can absorb or take up chemicals from many sources in our environment. Ground water used for irrigation can carry substances from surrounding areas, air pollution can settle on the surface of growing crops, and soils can house pesticides and other chemicals for years, the researchers said. As a result, crops can inadvertently be exposed to unknown substances or banned chemicals, the researchers said.

“We dug out all the local soil in our raised beds at home and replaced it with organic soil,” Prasse said. “Because, as it turns out, it’s often the chemicals coming in from the surrounding environment that we should be paying attention to.”

The study is part of a larger effort to better understand how farming practices affect the quality of food. The researchers plan to test farm-raised tomatoes, corn, and other vegetables. 

Authors include Johns Hopkins assistant scientists Sara Lupolt and Brent Kim, program officer Raychel Santo, master’s student Qinfan Lyu, and former PhD student Christopher L. Brueck; Georgia Tech PhD student Xiaoyue Xin; and EPA chemist Antony J. Williams.

This work was made possible by cooperative agreement 58-8040-8-021 between the U.S. Department of Agriculture Agricultural Research Service and Johns Hopkins University, NSF DGE1746891, and EPA grant R840247.

 

Workers in 14 States Launch Largest Starbucks Union Drive Yet

"It's important that we're recognized as people rather than profit machines," said one Louisiana barista. "We don't have another choice but to stand together.
"

Starbucks Workers United members and supporters rally in Washington, D.C. on June 18, 2022.
(Photo: Starbucks Workers United/Facebook)

BRETT WILKINS
Feb 20, 2024
COMMON DREAMS

Employees at 21 Starbucks stores across the United States informed the global coffee giant's CEO on Tuesday that they are launching the largest single-day unionization in company history.

The baristas—who are employed at Starbucks in 14 states—said in a letter to CEO Laxman Narasimhan that they've "decided to follow in the footsteps of over 396 other stores and nearly 10,000 partners to demand better."

Their union, Starbucks Workers United, cited low pay, inconsistent scheduling, and safety concerns as reasons for filing for union elections.

"Though we work at different stores, we are united through our shared experiences and in our demand for higher wages, fair and consistent scheduling, improved benefits, and a safe and dignified workplace," said the workers, who are called "partners" by the company.



"Starbucks has made a habit of prioritizing sales and profits over partner safety," the baristas alleged. "We have worked through violent threats from customers, unsafe weather conditions, and a global pandemic. Despite our willingness to work regardless of this disregard for our health and safety, we have been met with higher and higher expectations without being given the resources to meet them."

The letter continued:
We "partners" demand a say. We are the face of Starbucks. As employees, we deserve the same respect and dignity as the CEO. This dignity includes fair pay, clear communication with all partners, a say in the decisions that affect our day-to-day, better power balance, and manageable expectations. Partners are not merely your workers but human beings, who have the right to pursue happiness outside of our work.

Lizzie Harlow, a barista at a Sulphur, Louisiana Starbucks, toldHuffPost that "it's important that we're recognized as people rather than profit machines."

"We don't have another choice but to stand together," Harlow added.



A Starbucks spokesperson said that the company respects its workers' right to unionize.

"We encourage all partners at stores petitioning for representation to get the facts, make an informed choice, and ensure their voices are heard by voting in neutral, secret-ballot elections," the spokesperson said.

According to the National Labor Relations Board—which has repeatedly taken action against Starbucks' union-busting—Workers United has won more than 80% of the roughly 400 union elections at the company's U.S. stores.

The U.S. is currently experiencing a labor organizing renaissance. According to the U.S. Bureau of Labor Statistics, union membership grew by nearly 200,000 last year alone. From Starbucks to strip clubs, American workers are forming or joining unions at rates not seen in decades.

Public support for organized labor is also its highest level in generations, with 71% of Americans including 88% of young people viewing unions favorably.

However, just 10% of U.S. workers belong to a union—the lowest rate ever recorded.