Showing posts sorted by date for query Orangutans’. Sort by relevance Show all posts
Showing posts sorted by date for query Orangutans’. Sort by relevance Show all posts

Monday, September 28, 2026

Copying mother: The surprising depth of culture shaping young orangutans’ lives





University of St. Andrews

Mother and infant Orangutan feeding

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A Sumatran orangutan mother and her infant are feeding on vegetation in the forests of Suaq.

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Credit: Guilhem Duvot @ SUAQ Project





New research from the University of St Andrews has found that the amount of knowledge a wild orangutan acquires over its long juvenile development depends on its style of learning, both socially and individually. 

In a paper published today (24 September) in Science, Researchers studying wild orangutans in Sumatra have been able to assess for the first time the scale of learning by juveniles’ before they achieve independence from their mothers. 

Infant orangutans differ greatly from one another in how frequently they engage in social versus individual learning. 

Orangutans hold the record for diligent maternal care, which lasts as long as eight or more years before youngsters can be weaned and forage independently. For orangutans this requires learning the approximately 250 dietary items that need to be extracted from the rainforest, some requiring the use of simple tools.  

 

The new study shows that the scope of the cultural heritage that passes from their doting mother to the infant over these years is substantially greater than has yet been appreciated for any non-human animal. 

  

Researchers from  St Andrews, in collaboration with the Max Planck Institute of Animal Behavior (MPI-AB) in Germany, used long-term data from the Suaq Balimbing monitoring station in Indonesia, and analysed nearly 7,000 records of youngsters’ experiences obtained during 4,700 hours of dawn-to-dusk observations spanning 12 years of field study. 

 

Instances of young orangutans closely peering at details of their mother’s behaviours were recorded as indicators of social learning, and instances in which juveniles explored the world themselves were recorded as indicators of individually driven learning.  

 

Examining how long it took after an episode of attentive peering for juveniles’ own explorations to deviate from the effects of this social information, the surprising answer was that on average it was as long as two and a half hours. This translates into youngsters acquiring 5-6 times more knowledge from their mother and others than their own purely  independent explorations.  

  

This is the first study of cultural inheritance in a wild animal to assess the totality of social and individual learning that goes into achieving the repertoire of behaviour needed for independent adult life. The team found that social and individual learning worked powerfully in tandem to achieve this, with juveniles showing the highest rates of both forms of learning achieving independence with the most comprehensive dietary profiles, in preparation for their adult lives. 

 

Conversely, when both forms of learning were low, individuals ended up with the lowest diet breadth, with a three-fold difference between high and low learning of both forms.  

Co- author Professor Andrew Whiten from the School of Psychology and Neuroscience at  St Andrews, said: “These findings about the extent of cultural and individual learning during these apes’ long childhoods suggest that this pattern, that we clearly share with them, has origins all the way back to our common ancestors, many millions of years ago.”  

The team now plans to look beyond diet breadth to determine whether greater learning also improves energy intake, and ultimately, if this actually translates into survival and reproduction. 

A Sumatran orangutan infant is peering at its mother

A Sumatran orangutan infant is peering at its mother from a close distance, where the mother is holding a stick tool in her mouth.

Credit

Adriana Luna @ SUAQ Project

Mother and infant

A Sumatran orangutan mother and infant pair, with the infant clinging to the mother.

Credit

Eric Balke @ SUAQ Project


Saturday, September 26, 2026

Learning Style Predicts Survival Skills In Young Orangutans


A Sumatran orangutan infant is feeding on a liana fruit in the forests of Suaq.
 Credit: Eric Balke @ SUAQ Project

A Science paper led by MPI-AB’s Revathe Thillaikumar and Caroline Schuppli, with Universitas Nasional, follows 21 wild Sumatran orangutan infants at Suaq Balimbing (Gunung Leuser) from birth to independence (~8.5 years). About 4,700 hours and ~7,000 learning records link “peering” (watch mother/others), solo exploration, and foods eaten without help—needed for a diet of ~250 items among thousands, some toxic.

Infants differed a lot in how much they watched vs tried, but all used social learning more (about five times as often). Peering triggered extra exploring for up to 2.5 hours. High social and individual learning produced the widest diets at independence; both low produced the narrowest (about a threefold gap). Extra watching could partly make up for little solo practice.

Authors call this an interplay, not “social vs individual,” and a clue to deep roots of human cultural learning. Next: energy intake, survival, reproduction—only long-term field lives can answer. One site, 21 animals; diet breadth, not yet fitness.


Orangutan infants spend their first eight years with their mothers, and throughout this time, they can draw on her knowledge. After that, however, orangutans are entirely on their own. To fare well as an independent orangutan, infants need to learn many survival skills, and arguably the most important of these are feeding skills. An adult orangutan’s diet constitutes nearly 250 distinct food items, which it chooses from thousands of different options, some of them potentially toxic, in the wide maze of the rainforest. Before they set out on their own, infants must also learn how foods should be processed, and when and where foods can be found in the forest

“How do infants master this complex diet curriculum in those first years?” asks Dr. Revathe Thillaikumar, a Marie Sklodowska-Curie Actions Postdoctoral Fellow at the Max Planck Institute of Animal Behavior.

Humans offer clues. Throughout our evolutionary history, humans had to learn an immense set of skills necessary for survival across many years of development. Many of these skills, such as knowledge of new food sources or hunting techniques, are learnt from one’s culture through a complex interplay of different forms of social and individual learning.

“But until now, whether and how wild animals use different forms of learning to develop their survival-relevant skills have remained unknown,” she says.

In a new study, Thillaikumar and colleagues show that wild orangutans build their broad diet profiles through a similarly fascinating interplay of social and individual learning during infancy. The study, published in Science and led by researchers at the Max Planck Institute of Animal Behavior (MPI-AB) in Germany in collaboration with Universitas Nasional in Indonesia, is the first to show that multiple forms of learning interact over many years to build broad, survival-relevant ecological skills in a wild great ape.
Learning by watching and doing

Researchers agree that many animals need learning to acquire many of the skills necessary for survival in the wild. However, it is debated to what extent animals learn from others (social learning) or practicing themselves (individual learning).

Answering this is challenging, especially in long-lived species like great apes. “To really understand how these forms of learning translate into actual skills and knowledge, we needed to link learning events to concrete, measurable outcomes like diet. But because orangutans develop so slowly, there is a multi-year lag between learning and measurable behavioral change,” says Dr. Caroline Schuppli, senior author of the study and group leader at MPI-AB.

A detailed dataset

The researchers overcame this challenge by drawing on long-term data from the Suaq Balimbing research station, Gunung Leuser National Park in Indonesia, where an international team of researchers and field assistants follow wild Sumatran orangutans over the course of the animals’ lives. For the study, the team investigated data from 21 immature orangutans recorded from birth to independence at around 8.5 years of age. Across 4,700 hours of observation, they examined three key behaviors: when orangutans closely observed their mother and nearby conspecifics through a behavior called “peering” (a behavioral indicator of social learning); when they explored different items in their habitat (a behavioral indicator of individual learning); and what food items they successfully ate without help from their mothers (a measure of ecological competence).

Thillaikumar worked with theoretical statistician Prof. Paul-Christian Bürkner of TU Dortmund University to analyze just under seven thousand records of social and individual learning, keeping each animal’s history separate to determine how its learning behavior related to its eventual diet breadth. “Analyzing each individual on its own was a linchpin for our study because this allowed us to finally link the two parts that were previously unbridgeable—learning and skill development,” says Thillaikumar.

Two forms of learning

The researchers found that immature orangutans differed substantially in how much they engaged in social versus individual learning. “We were astonished by how different infants were from one another in their tendencies to learn,” adds Thillaikumar. Despite such variation, all immatures engaged in social learning more frequently than individual learning—as much as five times more frequently on average.

“Learning purely through individual exploration can be risky for a naïve orangutan, especially for immatures who are still growing and cannot afford to miss out on feeding opportunities. So the safer option may be to watch and learn from knowledgeable role models, such as their mothers,” explains Schuppli.

Three-fold contribution of social learning

The team found that when infants engaged in social learning, it triggered subsequent exploration for as long as two-and-a-half hours. “Each time an infant peered, it had a prolonged, ripple effect on subsequent explorations,” says Thillaikumar. The authors wanted to pin down the effects of each of the two processes, so they considered only explorations that were independently initiated to test how individual and social learning worked together.


They found that social learning and individual learning worked in tandem over the developmental period. Infants that engaged in high rates of both forms of learning ended up with the broadest diet profiles at independence. Conversely, when both forms of learning were low, individuals ended up with the lowest diet breadth, with a three-fold difference between high and low learning of both forms.

Increased social learning could even partially compensate for low individual learning by improving diet breadth. “Social learning stepped in to do the heavy lifting, which shows us just how significant it is in the lives of great apes,” adds Thillaikumar.

The results prompt a nuanced appreciation of the mechanisms underlying great ape cultures. “It’s about more than just social or individual learning,” says Schuppli. “It’s about the interplay of complex learning mechanisms that has driven the development of a broad, highly survival-relevant cultural competence in one of our closest, living relatives in the wild. This suggests that the sophisticated cultural learning seen in humans may have deep evolutionary roots.”

Linking learning to survival

The results show that heightened learning results in broader diets, but questions remain about exactly how this advantage arises. “Are they learning about lots of items, or are they getting better at learning?” asks Thillaikumar.


The team now plans to look beyond diet breadth to determine whether greater learning also improves energy intake, and ultimately, if this actually translates into survival and reproduction.

“Questions like these can only be answered by watching animals in their natural environment from birth to death,” says co-author Dr. Sri Suci Utami-Atmoko from Universitas Nasional in Indonesia. “Long-term field studies provide the time and space to follow long-lived animals over their whole histories. For orangutans, these studies provide us with window into how culture and survival have become intertwined over evolutionary time.”



Friday, August 07, 2026

 

First complete marmoset genome will enable research on Alzheimer's, neurodegenerative diseases


The new reference is one in a collection of studies on end-to-end, or “T2T,” genomes



University of California - Santa Cruz

Prajna Hebbar 

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UC Santa Cruz Biomolecular Engineering and Bioinformatics Ph.D. student Prajna Hebbar led the effort to produce the first end-to-end genome sequence of the common marmoset. 

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Credit: Carolyn Lagattuta/ UC Santa Cruz





To study complex diseases like Alzheimer’s, scientists and clinicians analyze how genes change and malfunction in other species. Marmosets, a species of tiny monkey from South America, have become an important animal to study for understanding disease—but researchers have never had a complete baseline for understanding the primate’s DNA.

Now, the first complete genome of the common marmoset is available to the scientific community, thanks to the efforts of researchers at the University of California, Santa Cruz Genomics Institute. With this resource, researchers will be able to study marmoset genetics with high accuracy and detail, revealing unseen features and enabling future insights into disease and evolution. The results are detailed in a study published today in Cell. 

UC Santa Cruz Ph.D. student Prajna Hebbar and Professor of Biomolecular Engineering Benedict Paten led this project as part of the Telomere-to-Telomere (T2T) Consortium, a collaborative, multi-institution effort to create high quality, truly complete reference genomes. The consortium made history in 2022 with the first complete human genome, and have continued to advance and drive down the costs of the technologies and methods needed to create complete genomes. 

The marmoset genome is one in a package of studies released today that shows that the T2T approach is becoming routine enough to be applied not just to human genomes, but to different species. This more automated process could set the stage for “personalized genomics,” where everyone’s complete genome sequence could serve as their own unique reference for medical care, at a lower cost than ever before.

“Routine T2T genomics is making findings easier and more plausible, as we’re able to much more easily access these complex regions,” Hebbar said. “It’s great to be in an era where we’re not stuck with the technical problems—we can go into the biology and make discoveries relevant to human health.”

A better reference

Marmosets are increasingly studied by scientists because as a new world primate, they are more closely related to humans than other model species like mice, while their small size makes them easier to work with than other primates like macaques. New-world primates like marmosets experience age-related memory loss, which has made them a great model for studying these conditions. 

To study the genetic makeup of a species, scientists use a standardized DNA sequence called a reference genome. By comparing individuals to this reference, they can make insights into disease, traits, and evolution.

Scientists created the first marmoset reference genome in 2014, but this version contained gaps and errors, and left several regions of the genome unresolved, making it difficult for researchers to accurately identify genetic variation. 

Thanks to new algorithms for highly accurate genome assembly pioneered by the T2T consortium, the updated reference resolves these errors and provides the first record of several complex features of the marmoset genome. The researchers used the new reference to examine genetic differences across 230 marmosets, finding variation at many of the genes linked to Alzheimer's disease in humans, and those vital to the immune system.

Alzheimer's-associated genes

Because the marmoset is increasingly relevant as a model for studying neurodegenerative diseases, the researchers specifically searched for a shortlist of genes known to be linked to Alzheimer’s, Parkinson’s, and related neurodegenerative diseases in humans and provided high-quality references for 76 instances of matching genes in marmosets. This will enable other scientists to study the health impacts of these genes with much higher accuracy.   

“We see variation in these marmosets in the same genes that we do in humans, further reinforcing the idea that the marmoset is a good model for studying Alzheimer’s disease in humans,” Hebbar said. “Now, we have this really complete, high-quality resource that people can take advantage of.”

Using their new reference along with transcriptomic data, which allows researchers to see which genes are “turned on” and “turned off,” the team identified previously undescribed forms of several genes, including the PSEN1 gene, which is the most frequent cause of early-onset familial Alzheimer's disease. Further study will be needed to know the significance of these discoveries, but this will only be possible thanks to the T2T reference opening up new areas for researchers to explore.

Immune system genes, sex differences, and other discoveries 

The Major Histocompatibility Complex (MHC) is a cluster of genes that underlies the immune system, and is known to influence many autoimmune and other diseases, including type 1 diabetes, multiple sclerosis, and rheumatoid arthritis. The researchers provided a complete record of the marmoset MHC region, annotating several complex, previously un-catalogued genes.

The complete genome also revealed that marmosets shuffle sets of ribosomal DNA (rDNA), a crucial subset of DNA that enables protein production, between chromosomes more freely than expected, gaining and losing whole arrays on individual chromosomes in ways not previously documented in primates.

“We also identified sex differences in the distribution of these genes, a pattern that has previously been reported in orangutans and gibbons, widening our understanding  of these genes that are extremely important to the biosynthesis of cells,” Paten said. “While these sex differences may not have an effect on the species, now that we can do T2T sequences, we’ll find out more.”

The researchers also identified patterns in the centromeres, regions of the chromosomes vital for cell division, that will warrant further study.

For Hebbar, the most exciting aspect of this project is that so much discovery is now within reach. At UC Santa Cruz, she has the opportunity to work with many of the pioneers of the first T2T human genome sequence, and has been struck by the rate of findings that she and her collaborators have been able to make about regions of the genome that researchers worked around for decades because they were too tangled and repetitive to read. 

“It’s pretty crazy that I'm doing this research in what is one of the best times to be doing your Ph.D. in genomics,” Hebbar said. “It’s cool to be part of this era where you can actually study all of these complex regions.”

UC Santa Cruz researchers involved in this effort include Associate Professor of Biomolecular Engineering Karen Miga, Hailey Loucks, Joshua Gardner, Harrison Heath, Mira Mastoras, Brandy McNulty, Julian Menendez, William Seligmann, and Ivo Violich. This research was funded by the National Institutes of Health, and collaborating institutions include the Jackson Laboratory, the University of Pittsburgh, the University of Washington, the Oregon Health & Science University, the Stowers Institute for Medical Research, and the German Primate Center.