Saturday, February 01, 2025

AUTOBOTS AND DECEPTICONS

Life as a multiscale cascade of machines making machines



Ulsan National Institute of Science and Technology(UNIST)
Distinguished Professor Tsvi Tlusty 

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Distinguished Professor Tsvi Tlusty from the Department of Physics at UNIST

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Credit: UNIST



What is life?–This remains the quintessential puzzle of biological sciences, a question that embodies the intricate complexity and stunning diversity of life forms. This study suggests that one viable approach to address this extreme complexity is to conceptualize living matter as a cascade of machines producing machines. This cascade illustrates how cells are composed of smaller submachines, reaching down to the atomic level where molecular machines, such as ion pumps and enzymes, operate. In the other direction, it explains how cells self-organize into larger systems, such as tissues, organs, and populations, cumulating into the biosphere. 

This new conceptual framework is a fruit of collaboration between Professors Tsvi Tlusty from the Department of Physics at Ulsan National Institute of Science and Technology (UNIST), South Korea, and Albert Libchaber from the Center for Physics and Biology at Rockefeller University, New York. The study was inspired by the seventeenth-century polymath Gottfried Leibniz, who noted that “the machines of nature, that is living bodies, are still machines in their smallest parts, to infinity”. 

Tlusty and Libchaber constructed a simplified language that characterizes living matter as an (almost) infinite, double cascade, spanning eighteen orders of magnitude in space and thirty in time. The large-scale and small-scale branches of this cascade converge at a critical point of 1,000 seconds and 1 micron, corresponding to the typical temporal and spatial scales of microbial life. This paper explains the origins of the critical point based on fundamental physical and logical principles, identifying it as the minimum conditions necessary for a self-reproducing machine to interface with salty water. 
 
This critical point marks the evolution from the construction of minimal self-replicating machines to the emergence of societies of such machines, ultimately leading to the formation of whole biospheres. 

"This work lays the conceptual groundwork for developing mathematical languages that encapsulate the hallmarks of life " said Professor Tlusty. “Such formalisms are essential for constructing a theory of life.”

The findings of this research have been published in the Proceedings National Academy of Sciences USA (PNAS) , on January 20, 2025. 

 

Story Source
Materials provided by Ulsan National Institute of Science and Technology (UNIST)

Note for Editors
This press release is made available courtesy of UNIST Public Relations Team.

Journal Reference
Tsvi Tlusty and Albert Libchaber, “Life sets off a cascade of machines," Proc. Nat. Sci. USA., (2025).
 

 

Ancient agricultural strategies revealed: how pre-industrial communities adapted to climate changes




Vilnius University
Bread wheat field 

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Bread wheat field

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Credit: Photo credit: Giedre Motuzaite Matuzeviciute




The study provides insights into the resilience and ingenuity of ancient agricultural systems, emphasizing the dynamic interplay between environmental challenges and human innovation. By analyzing archaeological evidence and historical records, the researchers reconstructed past crop repertoires, shedding light on how communities diversified their agriculture to ensure food security amidst changing conditions.

This research enhances our understanding of historical agricultural practices and offers valuable lessons for modern agriculture. As contemporary societies face greater climate variability and socioeconomic uncertainties, the adaptive strategies of the past may inform sustainable agricultural practices and policies today.

“Recent drying-up processes and increased risk of prolonged heatwaves and subsequent droughts are challenging our socio-political resilience, and demand a rethinking of global food production strategies. Reconsidering drought tolerant species, therefore, can help mitigate the long-term effects of current global warming,” says environmental scientist Dr. Michael Kempf.

“It is due to the Little Ice Age that the staple foods such as rye bread and buckwheat porridge came to dominate the cuisine of northeastern Europeans. Warming climates might  lead us back to forgotten millet crops,” says Prof. Motuzaite Matuzeviciute.

Situated at the intersection of different climatic zones, northeastern Europe represents a marginal agricultural region where buffer crops play a crucial role in ensuring food security amidst shifting environmental conditions.

“Natural conditions, agriculture, and gastronomic culture have always been closely interconnected. Gastronomic culture is more inert, meaning that environmental changes first affected agriculture and only later became apparent in the kitchen. Therefore, studying these processes is essential for understanding both past and contemporary societies.” noted Prof. Rimvydas Laužikas.

The historical records indicate a southward shift of millet agriculture during the onset of the Little Ice Age. The Vilnius University PhD candidate Meiirzhan Abdrakhmanov concludes that “this study emphasizes the dynamic nature of agricultural adaptation and underscores the resilience of past communities in responding to climatic 

For more details, see the full study: "The Shifting of Buffer Crop Repertoires in Pre-Industrial North-Eastern Europe" at Nature Scientific Reports.

This research was funded by the European Union with a Consolidator Grant awarded to Giedre Motuzaite Matuzeviciute (ERC-CoG, MILWAYS, 101087964)

 

Detections of poliovirus in sewage samples require enhanced routine and catch-up vaccination and increased surveillance, according to ECDC report




European Centre for Disease Prevention and Control (ECDC)





Between September and December 2024, four countries in the EU/EEA (Finland, Germany, Poland, Spain) and the United Kingdom reported detections of circulating vaccine-derived poliovirus type 2 (cVDPV2) in sewage samples. This is the first time cVDPV2 has been detected in EU/EEA countries from environmental surveillance.

To date, no human polio cases have been reported and the EU/EEA continues to be polio-free, but such findings call for increased vigilance.

Laboratory analyses likely indicate that the virus has been repeatedly introduced from an unknown area where that specific form of the virus is still in circulation. These recent importations may pose a threat to public health in the EU/EEA and should be monitored closely according to a Rapid Risk Assessment published today by ECDC on this topic.

“Europe has been polio-free for more than 20 years. We have to remain vigilant, maintain high vaccination rates and close any vaccination gaps that exist to prevent any return of this serious disease,” said Pamela Rendi-Wagner, ECDC Director.

Poliovirus is highly infectious and can be transmitted easily and silently across wide geographical areas. Therefore, while the EU/EEA continues to remain polio-free, it is vital to maintain adequate vaccine-induced immunity. Polio is a potentially debilitating disease and no specific therapy is available against the virus. Vaccination is the only effective method of protecting against severe disease caused by poliovirus.

Although the majority of EU/EEA countries report vaccination coverage above 90% at the national level, subnational data reveal a much more heterogeneous picture, with only 39% of reporting districts reaching 90% vaccination coverage, which requires constant assessment of vaccination strategies and vaccination coverage from both national and sub-national perspectives. Additionally, according to ECDC estimates, around 600 000 children aged 12–23 months may not have received a full primary polio vaccination course in 2022 and 2023.

The overall risk among vaccinated populations is assessed to be very low, irrespective of the extent of vaccination coverage. The overall risk among under or unvaccinated populations is assessed to be low in areas with high vaccination coverage and moderate in areas with low vaccination coverage.

If polio cases occur, Member States should activate national poliomyelitis response plan; clinicians, particularly paediatricians, should be made aware regarding the possibility of acute flaccid paralysis (AFP) cases caused by poliovirus.

Based on the assessment, ECDC recommends public health authorities reinforce routine childhood vaccination programmes to achieve and maintain at least 90% coverage across all levels of society. It also calls for timely immunisation catch-up campaigns targeting individuals with incomplete or unknown vaccination status, particularly in areas of suboptimal coverage or where environmental sampling has detected the virus.

Additionally, authorities are advised to maintain adequate stocks of inactivated polio vaccine (IPV) and to ensure that all populations with unknown polio vaccination history, receive the vaccine.

Countries are also encouraged to strengthen environmental surveillance to quickly detect any further introductions or circulation of the virus. By improving data collection and surveillance systems, EU/EEA countries can better identify gaps in vaccination, adapt response strategies, and communicate effectively with the public.

Furthermore, public health authorities should develop tailored, context-specific, culturally sensitive interventions to increase vaccination uptake and conduct risk communication activities to highlight the importance of ensuring timely routine vaccination.

ECDC will continue to work closely with national authorities and international partners to monitor the situation, provide guidance, and support efforts to maintain high vaccination levels. Through these collective measures, the EU/EEA aims to prevent poliovirus from returning to communities and safeguard them against an entirely preventable disease.

 

240-year-old drug could save UK National Health Service £100 million a year treating common heart rhythm disorder



Health economic analysis shows digoxin leads to fewer adverse events which could free up hospital beds


AKA  DIGITALIS / FOXGLOVE


University of Birmingham





A 240-year-old drug called digoxin could save the National Health Service (NHS) at least £100 million each year when treating older patients with atrial fibrillation and heart failure.  This was compared to usual treatment with a beta-blocker according to a new study from the University of Birmingham, the city where digoxin was first used in 1785.

 

In a paper published in the journal Heart, researchers conducted an economic analysis on a clinical trial called RATE-AF to look at the differences between two widely used drugs for older patients with a common heart rhythm disorder called atrial fibrillation (AF) and symptoms of heart failure.

 

The RATE-AF trial, funded by the National Institute for Health and Care Research, included 160 patients and randomly assigned them to receive digoxin or beta-blockers for 12 months.  An economic analysis was conducted to work out cost-effectiveness.

 

Among the patients who received digoxin, there were substantially less adverse events than with beta-blockers, including lower rates of hospital admission and general practice reviews for heart health. This resulted in an average cost saving of £530 per-patient per-year with digoxin.  Extrapolating these results to the UK NHS, the researchers identified a potential cost saving of £102 million per year, which represents nearly 6% saving on the £1.7 billion spent annually on atrial fibrillation. 

 

Professor Sue Jowett, Deputy Head of the Health Economics Unit at the University of Birmingham and corresponding author of the study commented:

 

“This study highlights the importance of health economic assessments and the role they can play to deliver appropriate treatments within the health service. At the usual £20,000 per quality-adjusted life year threshold, the probability of digoxin being cost-effective compared to beta-blockers was 94%, which could lead to substantial savings if the trial results were adopted more broadly in this population.”

 

Professor Dipak Kotecha from the Department of Cardiovascular Sciences at the University of Birmingham and the chief investigator of the trial said:

 

“Heart conditions such as atrial fibrillation and heart failure are expected to double in prevalence over the next few decades, leading to a large burden on patients as well as substantial impact on health systems around the world.  Despite being one of the oldest drugs in use for heart disease, this study confirms an important role for digoxin in the management of these patients, providing safe and cost-effective treatment.”

 

No evidence that maternal sickness during pregnancy causes autism





NYU Langone Health / NYU Grossman School of Medicine




While many studies have reported a link between a mother’s health condition during pregnancy and her child’s risk of autism, a new study shows that nearly all of these “associations” can otherwise be explained by factors such as genetics, exposure to pollution, and access to healthcare.

Led by researchers at NYU Langone Health, the study revealed that, of the few conditions truly associated with autism, all were actually complications with the fetus — leading the authors to believe that those symptoms were early signs of autism in the child and not the cause of it. 

“Our study shows that there is no convincing evidence that any of these other diagnoses in the mother can cause autism,” said study senior author Magdalena Janecka, PhD, an associate professor in the Department of Child and Adolescent Psychiatry and in the Department of Population Health, at NYU Grossman School of Medicine. 

Publishing in the journal Nature Medicine online Jan. 31, the new study included an analysis of 
the medical histories of more than 1.1 million pregnancies (among 600,000 mothers) from a national registry in Denmark. Unlike medical records in the United States, which are often scattered among many different medical providers an individual sees during their lifetime, in Denmark all of an individual’s health records are consolidated under a single government-issued number, which enabled researchers to check each woman for more than 1,700 distinct diagnoses as defined by international standards, known as ICD-10 codes. From these, researchers focused their analysis on those diagnosed in at least 0.1% of pregnancies (236 diagnoses).

“We believe our study is the first to comprehensively examine the entire medical history of the mother and explore a wide range of possible associations, controlling for multiple concurrent conditions and confounding factors,” said study lead author Vahe Khachadourian, MD, PhD, MPH, a research assistant professor in the Department of Child and Adolescent Psychiatry at NYU Grossman School of Medicine.

Denmark has strict safeguards in place to prevent misuse of the registry data, says Janecka, since it contains personal information. But because of the individual-specific information, the researchers were able to cross-check every diagnosis a woman had had with her children’s risk of autism.  

For the study, the researchers corrected for factors that could confound, or offer an alternative explanation for, the link between the diagnosis a woman received and a child’s autism diagnosis. These factors include sociodemographic status and the mother’s age during pregnancy, since children of older mothers are more likely to be diagnosed with autism, and their mothers are also more likely to receive certain diagnoses, such as hypertension, than their younger counterparts. 

After accounting for these confounding factors, as well as for concurrent diagnoses, 30 were still statistically associated with autism in the child. To determine if these happened to occur alongside rather than cause autism, the researchers then included the siblings of autistic children in the analysis. If a mother was diagnosed with the same condition during pregnancies of children with and without autism, then it would suggest that factors other than her diagnosis were influencing the link with autism. This step disentangled the conditions that could be attributable to familial factors, such as genetics and environmental exposure to pollution, from those that may be causing autism. 

Genetics is a strong familial confounder (plausible explanation) for autism, the researchers say. Certain genes that increase the risk of someone having depression are also more closely tied to them having autism. If a woman suffers a bout of depression during pregnancy and her child is autistic, it is much more likely that mother and child share genes that cause both conditions, rather than that the chemical effects of depression somehow affected the fetus to cause autism during development. 

Researchers also analyzed fathers’ medical histories. Any association between a paternal diagnosis and autism would most likely be caused by familial factors, since the father’s direct effects on a fetus postconception are likely very limited. In fact, the researchers observed that a lot of paternal diagnoses are just as related to child autism as the maternal diagnoses.

After accounting for the familial factors, the only maternal diagnosis that was still strongly statistically associated with autism was pregnancy complications related to the fetus. 

“Our interpretation is that these fetal diagnoses likely do not cause autism, but are instead early signs of it,” said Janecka. “The predominant hypothesis is that autism really starts prenatally. Even before a child receives a diagnosis for autism, developmental changes have been happening the entire time. 

“Many mothers of children with autism feel guilty about it,” said Janecka, “thinking that they did something wrong during pregnancy, and it is heartbreaking. I think showing that these things are not going to cause autism is important and may lead to more effective ways to support autistic children and their families.”

Autism is recognized as a developmental disorder that often appears in childhood and is marked by a range of difficulties with social interactions and repetitive behaviors. Symptoms vary widely into adulthood but can include reduced eye contact, reluctance to engage in playtime activities, repeating gestures or sounds, and an indifference to temperature extremes. According to federal estimates, one in every 54 children in the United States is affected by autism.

Funding support for the study was provided by National Institutes of Health grants R01MH124817 and T32MH122394, Lundbeck Foundation grants R102-A9118 and R155- 2014-1724, the Seaver Foundation, and the Eunice Kennedy Shriver National Institute of Child Health and Human Development grant HD098883.

Other study co-investigators are Elias Speleman Arildskov, Jakob Grove, and Stefan Nygaard Hansen at Aarhus University in Denmark; Paul O’Reilly, Joseph Buxbaum, Abraham Reichenberg, and Sven Sandin at Icahn School of Medicine at Mount Sinai in New York City; Lisa Croen at Kaiser Permanente Northern California in Oakland; and Diana Schendel at Drexel University in Philadelphia. 

Media Inquiries:
David March
212-404-3528
David.March@NYULangone.org 

STUDY LINK WILL BECOME ACTIVE AFTER EMBARGO LIFT:
https://www.nature.com/articles/s41591-024-03479-5 

STUDY DOI: 
10.1038/s41591-024-03479-5
 

 

New study reveals optimized in vitro fertilization techniques to boost coral restoration efforts in the Caribbean




PeerJ
Figure 1: Study species. 

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A) Diploria labyrinthiformis, (B) Colpophyllia natans, (C) Pseudodiploria strigosa, and (D) Orbicella faveolata. Gametes collected from these species were used in a series of fertilization assays to quantify the influence of sperm concentration, gamete age, and gamete co-incubation time on IVF success. 

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Credit: Photo credits: Lars ter Horst.




A recent study published in PeerJ Life and Environment unveils refined techniques for in vitro fertilization (IVF) in four key Caribbean coral species, offering a crucial advancement in coral reef restoration efforts. Researchers from SECORE International, the CARMABI Foundation, and the University of Amsterdam have developed new insights into the optimal conditions for coral breeding, which could significantly enhance larval production and bolster declining coral populations.

Study Focus

The study examined four broadcast-spawning coral species: Diploria labyrinthiformisColpophyllia natansPseudodiploria strigosa, and Orbicella faveolata. These species are essential for maintaining the Caribbean’s marine ecosystems, yet their populations have been severely impacted by climate change, diseases, and other anthropogenic factors.

Key Findings

  • Gamete Viability: Coral gametes remain viable for at least four hours after collection, allowing researchers to mix gametes from multiple sites to enhance genetic diversity.
  • Fertilization Timing: Brain corals (D. labyrinthiformis, C. natans, and P. strigosa) fertilize quickly—within just 15 minutes of sperm-egg co-incubation—reducing handling risks.
  • O. faveolata Requirements: This foundational reef-building coral requires longer co-incubation times (60-120 minutes) for optimal fertilization success.
  • Sperm Concentration: Minimum sperm concentration thresholds were identified at 10⁵-10⁶ cells/mL, providing critical benchmarks for IVF protocols.

These findings offer actionable guidelines for coral IVF practitioners, enabling higher larval yields while minimizing gamete wastage and embryo damage. Such advancements could help restore isolated coral populations and counteract natural sperm limitations in the wild.

Implications for Coral Restoration

Coral reefs are among the most biodiverse and threatened ecosystems on the planet, and breeding corals for restoration is emerging as a key tool in their recovery. By optimizing fertilization techniques, restoration practitioners can scale up efforts to repopulate degraded reefs with healthy, genetically diverse corals.

“Our study highlights the importance of tailoring IVF protocols to specific coral species,” said Dr. Valérie F. Chamberland, lead author and researcher at SECORE International. “By fine-tuning these methods, we can increase the efficiency and impact of coral restoration projects, giving these vital ecosystems a better chance of recovery.”

The study also underscores the potential of IVF to overcome reproductive barriers in coral populations that are geographically isolated or genetically disconnected, expanding the possibilities for large-scale restoration initiatives.

Looking Ahead

The findings of this study will be directly applied to improve coral breeding protocols and distributed within SECORE’s network of restoration practitioners. With climate change continuing to threaten coral reefs worldwide, advancements like these are crucial for preserving marine biodiversity and the livelihoods that depend on healthy oceans.