Friday, June 13, 2025

 

What’s in a name? New research catalogues how birds are categorized by what we call them



Findings, drawn from database created by NYU, Natural History Museum of Los Angeles County, reflect how we interact with nature



New York University

An immature female Northern parula 

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An immature female Northern parula

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Credit: Carol Ourivio/NYU





There are thousands of species of birds, and many of their names are well-known to us—blue jay, robin, and mallard, to name just a few. But we have little understanding of the holistic nature of avian nomenclature. Do birds’ names tend to stem from physical or biological traits, such as a black-and-white warbler, or, rather, from people—such as Bonaparte’s gull, which was named after Charles Lucien Bonaparte, an ornithologist and nephew of Napoleon Bonaparte?

A new study by New York University and the Natural History Museum of Los Angeles County answers many of these questions. 

After compiling a database of nearly 11,000 birds’ names, the researchers found that a majority—nearly 90 percent—are named after biological or other characteristics and a very small percentage—11 percent—are named after people. 

The database, the AvianLexiconAtlas, comes nearly two years after the American Ornithological Society announced that it would rename all bird species currently honoring people. 

“Until the publication of this database, there was no quantitative way to analyze the current state of terms in English bird names,” explains Erin Morrison, a professor in Liberal Studies at NYU and the co-lead author of the paper, which appears in the journal PLOS One. “In addition to showing that a very small percentage of birds are named after people, the database reveals some of the terminology we use to name birds is very specialized—and it points towards an issue with how accessible these names are, such as the isabelline shrike and the diademed sandpiper-plover, even to native English speakers.”

“The work gives us a rich insight into how birds are named overall,” adds Allison Shultz, co-lead author and curator of ornithology at the Natural History Museum of Los Angeles County. “Those naming processes can reflect all the strangeness and specificity of the people naming them, their culture, and their history—things that wouldn’t help tell you what a bird looks like.”

Some of the stranger bird names include the barnacle goose, whose name comes from an erroneous medieval notion that these geese hatched from barnacles each autumn, and the Pincoya storm-petrel—a moniker based on mythical Chilean sea nymph who represents the fertility of the seas, aids shipwrecked mariners, and dances on the waves to indicate good or bad fishing. 

Common names are often the way the general public interacts and communicates about species in nature—for instance, brown bears or the California sea lion. These names should therefore provide an accessible way for people to engage with and identify species—though this isn’t always the case when it comes to birds.

“In ornithology, there has been significant reflection among both professional researchers and amateur naturalists about what the terminology in regionally standardized English-language common names should communicate about species of birds,” explains Morrison. 

Some names directly describe characteristics of a species (e.g., yellow-rumped warbler), while other names are ambiguous (e.g., barnacle goose), are unrelated to the species’ biology (e.g., Wilson’s warbler), or have no obvious significance (e.g., the common grackle).

The researchers believe that the AvianLexiconAtlas, a Github site that encompasses nearly all known bird species, can serve as a systematic resource to assess the types of terminology used in the English-language common names of birds. 

“Our hope is that this database, which includes the categorical dataset as well as a glossary and gazetteer of terms in English-language bird names, can be used by other researchers and amateur naturalists to study the utility of the terms, linguistic patterns, and their biological relevance—among other educational uses,” says Morrison.

The AvianLexiconAtlas database provides a quantitative dataset that assigns the unique descriptor of each species's common name to one of 10 distinct categories associated with aspects of avian physical traits, avian natural history, or human culture. These include the black-capped chickadee (a physical trait shared by both sexes), the European starling (geographic location), and the rock pigeon, which nests on cliffs (natural history).

The project started with Morrison and Shultz wondering how many species were named after birds’ feathers, or plumage, found only in males—such as a scarlet tanager.

“We found that about 1,000 of the 11,000 species were named after male-only plumage, but just 20 were named after female-only plumage—with the orange-bellied antwren being one of the few,” notes Shultz. 

The compiling of the atlas began in Morrison’s Life Science class at NYU in the fall of 2022. In a course assignment, the students identified whether a bird species is named after a person, a non-English language term (e.g., baglafecht weaver), a geographic location, a physical trait, physical size (e.g., small blue kingfisher), a natural history trait (e.g., mangrove finch), or a behavioral trait (e.g., mute swan). Some of the course’s students, along with NYU Liberal Studies professors Kevin Bonney, Ida Chavoshan, Jared Simard, and Talia Mota, are among the paper’s co-authors. 

“In the future, we look forward to combining what we learned with rich sources of data like our bird collections to understand the connections between birds and people better,” says Shultz. “Overall, this work provides valuable insights in helping develop approachable names that help strengthen this connection and ultimately help protect birds and nature.” 

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A red-eyed vireo

Credit

Carol Ourivio/NYU

Scientists uncover insights into the origins of antibodies to peanut




Massachusetts General Hospital





Why do people develop antibodies to food? While clinicians have long observed that healthy humans develop a particular type of antibody, called IgG, to the foods they eat, the reasons for this phenomenon have remained unknown. Researchers, led by investigators from Allergy and Immunology at Mass General Brigham, have identified the mechanism underlying IgG antibody development to food proteins. They discovered that humans are intrinsically predisposed to develop a particular type of IgG antibody to peanut by human antibody genes. These antibodies develop, whether or not they develop peanut allergy. Results are published in Science Translational Medicine.

“Our research not only explains why we have always found these antibodies against peanut, but why so many people, including young children, have such similar antibodies to a food so common in the world,” said senior author Sarita Patil, MD, co-director of the Food Allergy Center at Massachusetts General Hospital (MGH), a founding member of Mass General Brigham. Patil is also an assistant professor of Medicine at Harvard Medical School. “We were astonished to find highly similar antibodies. Statistically this seems improbable, since our immune system can produce as many as a quintillion different kinds of antibodies. When we found these nearly identical, public antibodies in multiple patients, we were fascinated.”

The research team, including lead author Orlee Marini-Rapoport, who conducted the work at MGH, found that humans are poised to develop antibodies to peanut in highly predictable ways through multiple pathways. In fact, these antibodies can bind to peanut before they undergo further evolution. Despite the different alleles, or variations in the human genome that exist in antibody genes, most humans have gene alleles that can contribute to making these antibodies. The research team then looked for these specific antibodies by designing a new assay using blood. In peanut-allergic patients, all of them had these antibodies. The team then set out to discover whether these common, easy-to-produce antibodies might also develop at the earliest time after infants begin to eat peanut. Indeed, most young children from ages 1-3 who make IgG antibodies to these peanut proteins make these specific antibodies.

While this work begins to explain why nonallergic individuals develop antibodies to food proteins, it also has important implications to the field of allergy. The fact that individuals develop highly similar antibodies suggests that it is also possible to therapeutically target food allergy across patients.  

“As we know, antibodies can be protective, but they can also cause disease in the context of allergy,” said Patil. “If on a larger level, we can dissect how humans develop antibodies, and why some go on to become allergic, we may be able to intervene with targeted therapies to treat and prevent food allergies on a population level.”

 

Authorship: In addition to Patil and Marini-Rapoport, Mass General Brigham authors include Lena Andrieux, Tarun Keswani, Timothy Sun, Victoria M. Martin, Qian Yuan, and Wayne G. Shreffler. Additional authors include Guangning Zong, Dylan Duchen, Gur Yaari, Jungki Min, Isabelle R. Lytle, Alexander F. Rosenberg, Christopher Fucile, James J. Kobie, Michael S. Piepenbrink, Antti E. Seppo, Kirsi M. Jarvinen, Johannes R. Loeffler, Andrew B. Ward, Steven H. Kleinstein, Lars C. Pedersen, Monica L. Fernandez-Quintero, and Geoffrey A. Mueller.

Disclosures: Patil has consultancy agreements with Mabylon, Bulhmann, and Seismic Therapeutics and is a site PI for a clinical trial for Regeneron. Min, Pedersen, Mueller, and Patil filed U.S. Provisional Patent 63/486,570 containing the epitope 1.1 mutant rAra h 2 allergen. Jarvinen has consultancy agreements with Janssen R&D, Harmony/Milk Care co and is a site PI for a clinical trial for Aimmune and Siolta. Duchen has a consultancy agreement with Artizan Biosciences. Kleinstein has a consultancy agreement with Peraton. Martin is a paid consultant who serves on the Scientific Advisory Board for Milk Care Co.


Funding: Funding for this work was provided by the National Institutes of Health (R01AI155630, R01AI182001, U01 131344, R01AI104739), Intramural Research Program of the National Institute of Environmental Health Sciences (1ZIAES102906, 1ZICES102645), Food Allergy Science Initiative, Gerber Foundation, Demarest Lloyd Jr. Foundation Thornhill Family Fund, NIAID (K23AI151556), and a Yale-Boehringer Ingelheim Biomedical Data Science Fellowship.

 

Paper cited: Marini-Rapoport, O et al. “Germline-encoded recognition of peanut underlies development of convergent antibodies in humans” Science Translational Medicine DOI: 10.1126/scitranslmed.adw4148
 

For More Information:

MGH Food Allergy Center

For Some Trick or Treaters, Food Allergies are a True Fear Factor. Here’s How Research at Mass General Brigham Could Help

Researchers Identify Mechanism Underlying Allergic Itching, and Show It Can Be Blocked

 

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About Mass General Brigham

Mass General Brigham is an integrated academic health care system, uniting great minds to solve the hardest problems in medicine for our communities and the world. Mass General Brigham connects a full continuum of care across a system of academic medical centers, community and specialty hospitals, a health insurance plan, physician networks, community health centers, home care, and long-term care services. Mass General Brigham is a nonprofit organization committed to patient care, research, teaching, and service to the community. In addition, Mass General Brigham is one of the nation’s leading biomedical research organizations with several Harvard Medical School teaching hospitals. For more information, please visit massgeneralbrigham.org.

 

A combination of exercise and omega-3 reduces the severity of tooth root infections



Rats that exercised and took fatty acid supplements responded better to bacteria and the inflammatory process of apical periodontitis, which can occur when caries reach the root canal and cause an infection





Fundação de Amparo à Pesquisa do Estado de São Paulo





A study published in the journal Scientific Reports indicates that physical exercise combined with omega-3 supplementation considerably improves the immune response and reduces the severity of chronic apical periodontitis.

Inflammation at the apex of the tooth – the tip of the root – and in the surrounding area is primarily caused by caries. If left untreated, the bacteria can reach the root canal and pass through it to the apex, causing apical periodontitis. This condition leads to bone loss in the area. 

The study is the first to demonstrate that a combination of moderate physical exercise and omega-3 supplementation significantly improves the inflammatory condition caused by apical periodontitis. This combination limited bacterial progression, reduced bone tissue loss, regulated the release of pro-inflammatory cytokines, and stimulated the activity of fibroblasts, the cells that create and maintain tissue.

If left untreated, the infection can lead to tooth loss. In addition, there is a two-way relationship between apical periodontitis and systemic changes in patients. Diabetes, metabolic syndrome, arteriosclerosis, and kidney disease, among others, can exacerbate apical periodontitis. At the same time, infection in the apex can exacerbate these diseases. 

“It’s a condition that patients may not even know they have because of its chronic nature, but which can evolve and lead to bone destruction and tooth mobility. In addition, in specific situations, such as a drop in immunity, it can become acute, so the patient starts to feel pain, pus forms at the site, the face can become swollen,” explains Rogério de Castilho, a professor at the Araçatuba School of Dentistry at São Paulo State University (FOA-UNESP) in Brazil. Castilho supervised the study and is supported by FAPESP.

“In rats, physical exercise alone brought about a systemic improvement, regulating the local immune response. In addition, when combined with supplementation, it further reduced the destructive condition caused by endodontic pathology,” explains Ana Paula Fernandes Ribeiro, the first author of the study, carried out during her doctorate at FOA-UNESP.

Less inflammation

The researchers induced apical periodontitis in 30 rats and divided them into three groups. The first group received no intervention. The second and third groups underwent a 30-day swimming regimen. 

The third group also received dietary supplementation of omega-3, a polyunsaturated fatty acid known for its therapeutic effects on chronic inflammatory diseases. 

The group that only swam had better outcomes than the untreated control group. However, omega-3 supplementation combined with physical exercise regulated the immune response and infection control even better.

Immunohistochemical analyses, which assess how the immune system responds to infection, revealed varying levels of the cytokines interleukin 17 (IL-17) and tumor necrosis factor alpha (TNF-α), indicating the intensity of the inflammatory response. 

While the rats that received no treatment had moderate levels of these cytokines, those that exercised had lower levels, and those that took supplementation had the lowest levels.

In addition to having lower levels of these cytokines, the group that exercised had fewer osteoclasts. These are cells that resorb bone tissue, indicating bone loss. The results were even better for the group that consumed omega-3, showing statistically significant differences compared to the animals that received no treatment.

Micro CT scans of the jaws showed that the animals that swam experienced less loss of volume of alveolar bone, which covers the teeth, than those in the control group. The loss was even less in the supplemented group.

For the authors, the study provides new evidence of the benefits of physical activity and omega-3 for the immune system, now with even more obvious repercussions for oral health. 

“To know if the same would be true for humans, we’d need a clinical study with a significant number of patients. However, in addition to the many proven benefits of physical exercise and omega-3 consumption, this is yet another important piece of evidence,” Jacinto says.

The work was supported by FAPESP through Scientific Initiation grants awarded to Michely de Lima Rodrigues (20/13089-3 and 22/04884-0), another co-author of the study. 

About FAPESP

The São Paulo Research Foundation (FAPESP) is a public institution with the mission of supporting scientific research in all fields of knowledge by awarding scholarships, fellowships and grants to investigators linked with higher education and research institutions in the state of São Paulo, Brazil. FAPESP is aware that the very best research can only be done by working with the best researchers internationally. Therefore, it has established partnerships with funding agencies, higher education, private companies, and research organizations in other countries known for the quality of their research and has been encouraging scientists funded by its grants to further develop their international collaboration.

 

 

A California dairy tried to capture its methane. It worked



Sealing manure ponds at a Central Valley farm cut emissions dramatically 



University of California - Riverside

Dairy digester 

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​Dairy digester on a Central Valley farm helping to reduce methane emissions. 

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Credit: Chelsea Preble/UC Berkeley





A giant, balloon-like tarp stretches over a lagoon of manure on a Central Valley dairy farm, concealing a quiet but remarkable transformation. Methane, a potent climate-warming gas, is being captured and cleaned instead of released into the atmosphere.

A new study from researchers at the University of California, Riverside shows the effectiveness of dairy digesters, which are manure ponds tightly sealed to capture and re-use the methane they produce. The study shows these systems can reduce atmospheric methane emissions by roughly 80 percent, a result that closely matches estimates California state officials have used in their climate planning.

The findings, published in Global Change Biology Bioenergy, come as California ramps up investment in methane control technologies to meet its goal of cutting emissions 40 percent below 2013 levels by the end of the decade. More than 130 of these systems are now operating across California dairies, but until now, their real-world performance hadn’t been verified this rigorously.

“The digesters can leak, and they sometimes do,” said Francesca Hopkins, a climate scientist at UCR who led the research. “But when the system is built well and managed carefully, the emissions really drop. That’s what we saw here.”

The team focused on a family-run dairy farm in Tulare County, a hot and dry region in the San Joaquin Valley that produces more milk than any other county in the United States. The researchers conducted mobile atmospheric measurements around the farm for a year before and a year after the digester system was installed in 2021, collecting hundreds of data points from a van equipped with precision gas sensors.

Methane is more than 80 times as potent as carbon dioxide at warming the atmosphere over a 20-year time frame. In California, much of the methane comes from dairy cows. The gas is not just from the burps they emit after eating, but from the way their manure is stored. When manure is held in open, water-filled pits, it breaks down without oxygen and emits methane into the air.

Covering those pits with gas-tight membranes allows the gas to be trapped, cleaned, and piped into fuel systems that often replace diesel in long-haul trucks. At the Tulare County site, researchers initially found some leaks in the system. Working with the digester operator, California Bioenergy, the team flagged the problems. Adjustments were made. The methane reductions followed.

“This was a textbook case of adaptive management,” Hopkins said. “The partnership between scientists, the company, and the farmer really made a huge difference.”

While the study affirms the potential of dairy digesters, it also acknowledges their limitations. They do not address other emissions common to dairy operations, such as ammonia or airborne particles that affect local air quality. Building the digesters is also no small task. It requires permits, capital investment, and long-term maintenance.

“They’re not for every farm,” Hopkins said. “But for dairies that can make it work, this is one of the most cost-effective ways we have to cut these greenhouse gas emissions.”

California is also expanding its monitoring capacity with satellite technology that can detect large methane leaks from space. State regulators can follow up with site operators when emissions spikes are detected.

Hopkins views the effort as a model for how climate policy, science, and industry can align when conditions are right. “There’s so much division in the climate space,” she said. “But this is a real example of cooperation that leads to measurable results.”

 

A jolt of innovation for brain-computer interfaces





University of Texas at Austin
BCI 1 

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From left to right: Former students Satyam Kumar and Hussein Alawieh and professor José del R. Millán operate a robotic arm using a brain-computer interface.

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Credit: The University of Texas at Austin





Did you know it’s possible to control a robotic arm or a wheelchair with just your thoughts, through a device called a brain-computer interface (BCI)? But for many users, learning to operate these systems is slow, difficult and, in some cases, unattainable.

Researchers at The University of Texas at Austin discovered a novel way to accelerate this learning process: a gentle electrical nudge to the spine before BCI training.

In a new study published in the Proceedings of the National Academy of Sciences, researchers from the Cockrell School of Engineering and Dell Medical School found that noninvasive spinal stimulation can help the user focus on the task at hand, significantly speeding up the learning curve for brain-computer interfaces. This stimulation was shown to cut learning time in half.

"By using spinal stimulation to prime the brain, we’re not just speeding up learning—we’re also making it possible for people who previously struggled to use BCIs to gain control," said José del R. Millán, professor in the Cockrell School's Chandra Family Department of Electrical and Computer Engineering and the Department of Neurology at Dell Med. "This opens up exciting possibilities for motor rehabilitation and assistive technology."

Brain-computer interfaces detect brain signals associated with movement intentions and translate them into commands for external devices. ​These systems rely on specific brain activity patterns called sensorimotor rhythms, which are generated when a person imagines moving a limb to control a device.

The researchers used a technique called transcutaneous electrical spinal stimulation, which involves delivering mild electrical pulses to the spinal cord through electrodes placed on the skin. The stimulation temporarily inhibits certain areas of the brain, allowing the neural activity associated with motor imagery to become more focused and stable. ​This “preconditioning” effect helps users produce stronger and more consistent brain signals, making it easier for the BCI system to interpret their intentions. ​

“Think of it like tuning a radio to the right frequency,” said Hussein Alawieh, a former graduate student in Millán's lab who was the first author of the study. “Spinal stimulation helps the brain filter out noise and focus on the signals that matter most for controlling the BCI. ​This makes the learning process faster and more effective.” ​

The researchers conducted experiments involving 20 healthy participants and two individuals with spinal cord injuries.​ Participants were divided into two groups: one received spinal stimulation before each training session, while the other rested for the same amount of time. ​Here's what happened:

  • Faster learning: Participants who received spinal stimulation showed significant improvements in BCI performance after just two training sessions, compared to five sessions for the control group. ​
  • Improved accuracy: By the end of the training, the stimulation group achieved higher accuracy in controlling the BCI, with stronger and more focused brain activity patterns. ​
  • Long-lasting effects: The benefits of the spinal stimulation persisted for at least a week after training, suggesting that the technique helps users retain their skills over time. ​

The researchers also tested their technique on individuals who had previously failed to learn BCI control using traditional methods. ​After undergoing the stimulation protocol, all participants in this “slow learner” group successfully gained control of the system, a sign that this technique could open up BCI to more potential users. ​

BCIs are already used to help individuals with paralysis regain some level of independence. In addition, this technique could be used as part of rehabilitation programs for stroke survivors and others with motor impairments.

BCIs have been shown to promote brain plasticity—the ability of the brain to reorganize itself and form new connections, which is critical for recovery. Faster and more reliable BCI control could enhance these therapeutic effects, potentially leading to better outcomes. ​

While this study focused on hand movements, the researchers believe their approach could be extended to more complex tasks, such as controlling robotic limbs with multiple degrees of freedom. They also plan to explore using their spinal stimulation technique in other populations, including individuals with severe neurological conditions.

“Our ultimate goal is to improve quality of life for people with motor impairments,” said Millán. “Whether it’s helping someone regain the ability to move their arm or enabling them to operate a wheelchair with their thoughts, this technology has the potential to make a real difference.”

The full team includes Satyam Kumar and Deland Liu of the Chandra Family Department of Electrical and Computer Engineering, professor Ann Majewicz Fey and Jonathan Madera of the Walker Department of Mechanical Engineering and Frigyes Samuel Racz of the Dell Medical School. The Coleman Fung Foundation funded the research.

 

Study finds retribution doesn’t pay, even with partisan voters



Voters share a unified view of politicians who punish corporate free speech


\
Northwestern University





EVANSTON, Ill. --- A new study by Northwestern University asks whether voters approve of politicians who use the power of their office to retaliate against corporate political speech criticizing the politician’s actions.

The researchers sought to determine whether voters would consider retaliation against a company an abuse of political power, and if voter opinion would depend on whether they had the same political party affiliation as the politician.

In February and April of 2024, the researchers surveyed 1,000 adults to collect opinions on actions of increasing severity a governor could take in response to public criticism from an in-state business.

Survey participants were randomly assigned to a mock newspaper report with one of three conditions: “no attack” which states that the governor is undeterred by the criticism; a “verbal rebuke” in which the governor is reported as having spoken out against the business, but with no subsequent action; and “retributive action,” which included removing tax benefits and calling for a statewide boycott.

The case is useful for testing whether there has been a shift in America’s long held political norms, including ambivalence about the role of business in politics and the countervailing norm of politicians not using their office for retribution.  

“We expected results were going to be entirely reflective of partisanship and completely driven by the voters’ partisan match or mismatch with the elected official,” said Principal Investigator Mary McGrath, assistant professor of political science at Weinberg College of Arts and Sciences and a faculty fellow at the Institute for Policy Research at Northwestern.

Key findings
In the survey results, voters showed no difference in how they responded to no attack and the verbal rebuke by the governor. In those scenarios, partisanship was the largest factor in how people viewed the governor’s actions. 

However, when it came to retribution against the company by the governor, the drop among in-party respondents was large enough to shift them from a positive vote intention to a negative vote intention.

Survey responses to the harsh attack included comments like “the governor shouldn’t be acting like a dictator” and “this is more like what a tyrant would do, going after a business that criticizes your policies.”

“We were surprised to find no real difference between Republican and Democrat voters, with neither group willing to give a pass to members of their own party,” McGrath said. “There was even evidence of voters responding more negatively to elected officials within their own party who used the powers of their office to punish.”

Implications
“While we can’t say how big or small the effect is within the context of the real world, at a fundamental level we can see voters are not happy with retribution,” McGrath said.

“Given how partisan our politics have become, I expected that voters would approve of almost any behavior so long as it came from their own party, but that simply was not the case,” said lead author Evan Myers, who spearheaded the project as part of his honors thesis at Northwestern. 

 “The study has left me feeling slightly more optimistic about people’s ability to recognize and condemn anti-democratic actions,” Myers said.

Electoral costs of political retaliation: bipartisan rejection of attacks on corporate speech,” was recently published by Cambridge University Press’s Business and Politics journal. In addition to Evans and McGrath, Anna Wander is also a coauthor on the paper.