Wednesday, February 14, 2024

 

If we can't untangle this mess, Norway's blue industry will never be green


One recent study estimates that the total amount of fishing line lost annually could stretch from the moon and back. A new study from Norway shows that roughly one-third of lines could be recycled


Peer-Reviewed Publication

NORWEGIAN UNIVERSITY OF SCIENCE AND TECHNOLOGY

Mountains of lost or abandoned fishing ropes 

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EVERY FISHING BOAT, WHETHER KNOWINGLY OR UNKNOWINGLY, REPORTEDLY LOSES FISHING GEAR. AS A RESULT, 2700 TONNES OF DISCARDED ROPE END UP AT RECEPTION FACILITIES IN NORWEGIAN PORTS EVERY YEAR. MEASURES ARE NOW BEING TAKEN TO STOP POLLUTION AND MAKE BETTER USE OF THIS WASTE

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CREDIT: PHOTO: PARITOSH DESHPANDE




Lost fishing lines and ropes are a growing problem. As a leading fishing nation, Norway, with its long coastline and fish-rich waters, is particularly vulnerable to marine litter. A new study from the Norwegian University of Science and Technology (NTNU) shows that only a third of all ropes produced and sold in Norway can be recycled in a sustainable way.

The rest are burned, buried, sent out of the country - or just pile up and contribute to something called ghost fishing. That's when lost or abandoned fishing gear, floating in the ocean or anchored to the bottom, inadvertently continues to catch marine creatures long after it was in commercial use. 

First study with statistics on ropes

“Norway is heavily dependent on the blue economy, and finding solutions is becoming increasingly urgent.  Without the responsible handling of ropes, the fisheries sector will never be green or sustainable,” says Paritosh Deshpande, an associate professor at NTNU’s Department of Industrial Economics and Technology Management.

He studies plastic litter in the ocean, and is the first person to establish how much rope is lost and how the Norwegian fisheries sector handles ropes.

Goal: new sustainability policy

The researchers have analysed 15 types of rope widely used by professional fishermen in Norway. They have also ranked the rope according to how easy or difficult it is to recycle.

The goal is to develop new knowledge and tools that can contribute to less litter, more recycling and increased sustainability. Deshpande’s statistics have been used by the UN Environment Programme and other agencies in the UN, the EU system, the Norwegian Environment Agency and others working on policy in this area.

The largest rubbish dump in the world

Only in the last decade have we realized that we have made the oceans the world’s largest rubbish dump. An article in Science estimates that between 5 and 13 million tonnes of plastic end up in the oceans each year, but there is no global data on how much of that comes from marine industries.

Same product - different content

For several years, Deshpande has collected data from Norwegian suppliers, manufacturers, dealers, fishermen, waste disposal sites, recycling companies and authorities. The collection has been repeated several times to remove uncertainty and ensure that the data are correct.

What he sees is that different manufacturers make the same types of rope and fishing gear, but in different ways and out of different materials. Many manufacturers don’t know exactly what kind of or how many different plastics their ropes contain. The methods vary, and imported raw materials may lack content labelling.

“If you buy a bottle of water, you can find out exactly how much calcium and magnesium it contains. You don’t get this kind of information when you buy fishing rope,” he points out.

Three categories of rope and three colours

An overview of the 15 most used ropes shows what they are made of, how they are made, what they are used for, and any special characteristics they have. The researchers have divided the ropes into three categories, with easy-to-understand traffic light colours according to their recyclability.

The first step towards a labelling scheme?

This could be the first step towards a labelling scheme where manufacturers divide ropes into categories. Labelling can contribute to used ropes being treated more as a valuable resource, the researchers believe.

Other measures may include:

  • Research and innovation for more eco-design and recyclability
  • Smarter return schemes
  • Best-practice schemes for handling ropes
  • Increased efforts to get plastic manufacturers to use recycled plastics

“Manufacturers, fishermen, authorities, waste disposal sites and recycling companies. All of them can be part of the solution, and none of them can do it alone. This also involves UN Sustainable Development Goal number 17, which is about us only being able to achieve the goals if we work together,”  Deshpande says.

Uncertainty and cause for concern

Waste is dangerous to wildlife that lives in and by the sea. It traps, injures and kills – and enters the food chains.

Deshpande is working to ascertain the scope of this, with Norway and the Norwegian fisheries sector as his starting point. He believes that if we are to make a green shift in the blue industry, the production cycle must be closed and the hazardous waste moved into a circular economy. In a circular economy, products must last as long as possible, be repaired, upgraded and be reused to a greater extent. When products cannot be reused, the waste material can be recovered and used as raw material in new production. In this way, the same resources can be used several times and as few as possible are lost.

To do that, we need to know what kind of plastic has gone astray, and how much is available for recycling.

“We then need to ensure that the possible solutions are environmentally friendly, socially acceptable and feasible,” he says.

Macabre fishing

In 2019, Deshpande and his colleagues published an article about the most deadly plastic waste that ends up in the ocean: fishing gear that has been forgotten, abandoned or lost.

“We conducted a material flow analysis that showed that almost 400 tonnes of this type of waste from the Norwegian fisheries sector end up in the sea every year,” says Deshpande.

A material flow analysis is a systematic assessment of flows and inventories of materials within a given system defined in space and time. Having good documentation of material flows is a prerequisite for good resource and environmental management of given substances or materials.

Crab pots, long lines, nets and fish pots get left on the seabed and continue to catch fish and other sea creatures. This macabre form of fishing can continue year after year.

In the long run, this littering also means that the fisheries end up undermining their own industry.

Rope was not included in this study, but it is the focus of Deshpande's recent article, published in the Marine Pollution Bulletin. Studies also need to be conducted into how much the fish farming industry contributes to the problem.

Deshpande says that the figures they have indicate that Norwegian fishermen fill Norwegian waters with almost 800 tonnes of plastic fishing gear and ropes – every single year.

Advice to the United Nations

Deshpande’s method and models have been adopted in other countries, such as Taiwan. He is also a member of WG-43, a work group in GESAMP – the Joint Group of Experts on the Scientific Aspects of Marine Environmental Protection. The group consists of independent scientific experts who map and analyse littering from fisheries and shipping, and advise the UN system on marine environmental protection.

“We received a serious amount of attention when WG-43 flagged the need for more knowledge about plastic-related problems in 2021. The world is finally waking up,” Deshpande said.

Tip of the iceberg

The computer models follow the life cycle of the materials from when they are extracted as raw materials, through being put into production, used and maintained, until they are finally discarded.

“The figures produced by these models always have a certain amount of uncertainty associated with them, and we take that into account. No such calculations have been made for plastic in ropes in Norway before,” Deshpande said.

“The point is not to get numbers that are correct right down to the last decimal place; we are measuring rubbish, not gold. The point is to have fewer ropes ending up in the sea and getting more rope into sustainable circulation,” he said.

However, this is just the tip of the iceberg. The study did not include recreational fishing, fish farming or foreign fishing fleets.

Rope is a hard challenge to untangle

Recycling rope is particularly challenging because there are so many different types. They can be made from many different materials and have very different characteristics. 

They are used for mooring, trawling, towing, anchoring and lifting. Some consist of only one type of plastic, while others may contain several types that may even have different melting points. Rope can be braided with copper wire, or have steel wire in its core. Some types float, while others have lead in them to make them sink.

The mountain of rubbish that keeps on growing

Every summer for the last 40 years, the Norwegian Directorate of Fisheries has carried out a cruise in Norwegian waters to collect lost fishing gear. In addition, there are divers, clean-up operations and campaigns that clean fjords and beaches.

“It is only in the last decade that the clean-up operations have really intensified, whereas commercial fishing has been going on for many decades. There is a lot of rubbish out there. We need to prevent marine littering from happening and find out how best to avoid its increase,” says Deshpande.

Not in compliance with EU directive

The EU’s Directive on Ship-source Pollution states that the more than 4400 small and large ports along the Norwegian coast must have reception facilities for rope and fishing gear from ships. When only one in three ports has such reception facilities, it leads to illegal dumping, illegal burning, and fishing gear being left on land without being properly processed.

The figures from NTNU show that approximately 2700 tonnes of discarded rope end up at reception facilities.

Lack of capacity and equipment

The discarded rope that comes in is often in a shocking condition, tangled and soiled with rotten biomass, fish oil and sand. Recycling companies do not have the appropriate cleaning equipment, and many find that recycling becomes technologically and economically impossible.

Norway lacks both systems and capacity for collection, and technology and equipment for recycling. As a result, more than half of the ropes and fishing gear that are delivered to reception facilities is incinerated or ends up in landfill.

The rest, much of it fully recyclable, is sent abroad for recycling.

Companies such as Nofir and Oceanize are leading actors in Norway, and ensure that waste is collected and assets are recycled. However, more people are needed to solve the problems,” says Deshpande.

Taking responsibility for our own waste

Deshpande says we do not know for sure how the ropes are processed when they are sent out of the country.

“It is our responsibility to manage the waste we create ourselves, or to ensure that the reception facilities process it the way we expect it should be when we export it.

In addition, when we send the waste out of the country, we lose the opportunity to create value from local resources,” says the NTNU researcher.

The EU has demanded that Norway introduces extended producer responsibility for equipment containing plastic from fisheries, aquaculture and recreational fishing by 31 December this year. This imposes responsibility on manufacturers for the products throughout their life cycle, from the design of the products until they become waste and the materials are used as secondary raw materials in new products. This means that the cost of waste management is included in the price of the product, in accordance with the polluter pays principle.

Norway must lead the way

Deshpande says he has learned a lot from the industry. He believes Norway is one of the countries in the world that must lead the way in developing knowledge that helps bring an end to marine littering.

He believes we can do it; awareness in the sector has increased and more focus is being placed on research. Most people get upset and angry at the sight of gannets sitting on nests of nylon ropes, and whales drifting ashore with their stomachs full of plastic.

References:
Paritosh C. Deshpande, Sidra Tul Muntaha, Ragnhild Bjerkvik Alnes. 2023.
Multi-stakeholder perspective to generate evidence and strategies for sustainable management of ropes from the fishing sector of Norway
Marine Pollution Bulletin. Volume 197, December 2023, 115798
https://doi.org/10.1016/j.marpolbul.2023.115798

  

Paritosh Deshpande is participating in the Research Council of Norway’s SHIFT-plastic project (2021-2025). The researchers are working together with 26 partners from industry, regulatory authorities and recycling. The goal is to solve plastic-related problems in the blue sector. 

CREDIT

Photo: Sølvi W. Normannsen


There are many different types of rope. Some can be recycled chemically, but others must be mechanically processed. Some types of rope can cause severe damage to machines and equipment. 

Some old ropes can become new plastic. More recycling is needed to make commercial fishing greener. 

CREDIT

Photo: Paritosh Deshpande

 

In rural states, gardening and foraging helped prevent hunger during COVID: Study


Peer-Reviewed Publication

UNIVERSITY OF VERMONT

Corn Seedlings 

IMAGE: 

PERSON PLANTS CORN SEEDLINGS

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CREDIT: SALLY MCCAY




New research on rural New Englanders shows that gardening, hunting, fishing and other HWFP activities are important tools for maintaining food security through extreme events, such as pandemics or climate change events. 

University of Vermont and University of Maine researchers found that both food insecurity and home and wild food production (HWFP) – gardening, hunting, fishing, foraging, and having “backyard” poultry or livestock – increased significantly during the COVID-19 pandemic, and those who undertook HWFP activities exhibited improved food security 9-12 months later.  

The paper, published in Scientific Reports, surveyed over 1,000 individuals in rural Vermont and Maine (the two most rural states in the country) to identify their food security and food sources. 

Researchers hope that policymakers will consider how HWFP might lead to a more resilient food system. “Home and wild food production is not a silver bullet, but it is a potential solution set that has been largely overlooked,” said Meredith Niles, Associate Professor at the University of Vermont, who led the study.

Programs that support HFWP are often overlooked by policymakers, but the research suggests that these activities could bolster food security, especially during ever more frequent crisis situations. 

“Even during normal times, there are many barriers to food access especially for people experiencing poverty. When the COVID-19 pandemic began, there were additional barriers including travel restrictions, stay at home orders, and disruptions to the supply chain,” said Rachel Schattman, Assistant Professor of Sustainable Agriculture at the University of Maine. “While there were a variety of food assistance programs, no one had really looked at how self-provisioning things like hunting, gardening, canning, foraging and raising backyard animals contributed to food security.” 

There was anecdotal evidence in the early days of the pandemic about people starting gardens and stories about canning jar shortages, but Niles says this paper brings quantitative data to back up those stories. “We were able to actually show, at a large scale with significant data, that people who did home and wild food production, especially gardening, in the early part of the pandemic, were more likely to be food secure 9 to 12 months later,” said Niles. “It’s exciting because we haven’t really seen this scale of data before and over multiple time points to assess this issue.” 

“We’ve suspected that producing some of your own food through hunting, fishing, foraging, gardening helps people’s food security. This is the best evidence yet that we have that producing your own food makes a difference,” said Sam Bliss, postdoctoral fellow at the University of Vermont who was involved in the research. 

One key takeaway from this report was that individuals who were newly food insecure during the pandemic seemed to be the best at recovering from food insecurity with home and wild food production, as compared to those food insecure also before the pandemic. “Our team is really interested to understand why chronically food insecure people in particular don’t seem to be able to use home and wild food production in the same way to improve food security as other people,” said Niles. “We have some information on the barriers they face and are exploring other work to assess how to overcome these issues.” 

“We need policies and programs that make producing your own food more accessible to the people who could stand to benefit the most from it,” said Bliss. 

The UVM research team included Meredith T. Niles, Ashley C. McCarthy, Sam Bliss, Emily H. Belarmino, Scott C. Merrill, Sarah A. Nowak, Jennifer Laurent, Farryl Bertmann, Rebecca Mitchell working with Rachel E. Schattman, Jonathan Malacarne, and Kate Yerxa (University of Maine). This project was supported by the UVM College of Agriculture and Life Sciencesthe Food Systems Research Center, and the Gund Institute for Environment. This project was a collaboration leading from The National Food Access and COVID Research Team (NFACT)

 

New study finds no significant association between preterm delivery and autism


Reports and Proceedings

SOCIETY FOR MATERNAL-FETAL MEDICINE




National Harbor, Md. -- Autism, also known as Autism Spectrum Disorder (ASD), is one of the most common developmental disorders and is increasingly diagnosed worldwide. According to the World Health Organization, an estimated one in 100 children has autism. In the U.S., those numbers are much higher, with an estimated one in 36 children being diagnosed with autism, according to the Centers for Disease Control and Prevention. Research into the causes of autism, specifically whether there is link between preterm birth and autism, is controversial. Some studies suggest there is a link between delivering an infant preterm and a child developing autism while other research has found no connection between the two.

In a new study to be presented today at the Society for Maternal-Fetal Medicine’s (SMFM) annual meeting, The Pregnancy Meeting™, researchers will unveil findings suggesting there is no significant association between preterm birth and autism.

Researchers analyzed nearly 115,000 deliveries over 12 years from 2005-2017 using records from hospital and community clinics in Israel. Data encompassed a wide diversity of pregnant people that included Jewish and Muslim people as well as Bedouins, a minority group within the Muslim community who lead a nomadic or semi-nomadic life.

The study looked at the diagnosis of autism in children based on when infants were delivered: extremely preterm, very preterm, moderate to late preterm, or term.

Of the 114,975 pregnancies analyzed, 0.3 percent of newborns were delivered extremely preterm, or before 28 weeks; 0.6 percent were delivered very preterm, or between 28 to just under 32 weeks; 6 percent were delivered moderate to late preterm, or between 32 to just under 37 weeks; and the remaining 93.1 percent were delivered at term, or between 37 weeks to 42 weeks. In the initial analysis, researchers found significant association between preterm delivery and the occurrence of autism (1.6% percent vs. 0.3 percent vs. 0.8 percent vs. 0.7 percent for extremely preterm, very preterm, moderate to late preterm, and term deliveries, respectively).

Nevertheless, after advanced analysis adjusting for factors that could potentially be associated with autism, such as ethnicity, small for gestational age, maternal age, and the infant’s gender, researchers found no significant association between preterm delivery and autism.

“The exact cause of autism is complex,” says the study’s lead author Sapir Ellouk, MD, MPH, an obstetrics and gynecology resident at Soroka Medical Center’s Saban Maternity and Birthing Center in Beer-Sheva, HaDarom, Israel. “But based on our data, a single obstetric factor is unlikely to be the cause of ASD. A more plausible theory involves the simultaneous presence of multiple factors.”

The abstract was published in the January 2024 supplement of the American Journal of Obstetrics and Gynecology.

Additional news releases about select SMFM research being presented are posted on AAAS’s EurekAlert (subscription needed) approximately one week in advance of embargo lifting. Embargoes lift on the date and start time of the abstract presentation.

###

 

About the Society for Maternal-Fetal Medicine

The Society for Maternal-Fetal Medicine (SMFM), founded in 1977, is the medical professional society for maternal-fetal medicine subspecialists, who are obstetricians with additional training in high-risk pregnancies. SMFM represents more than 6,000 members who care for high-risk pregnant people and provides education, promotes research, and engages in advocacy to advance optimal and equitable perinatal outcomes for all people who desire and experience pregnancy. For more information, visit SMFM.org and connect with the organization on Facebook, Twitter, and Instagram. For the latest 2024 Annual Meeting news and updates, follow the hashtag #SMFM24.

 

Short corrective comments can help social media user to spot false information, study shows


Peer-Reviewed Publication

UNIVERSITY OF EXETER




Short and simple comments from ordinary social media users can help others online to spot fake news, a new study shows.

 

Research shows reading corrections from others online can reduce the perceived accuracy of and engagement with incorrect content.

 

Experts found the format and strength of corrective comments do not matter much. Social media users do not need to write long and detailed comments to flag false content.

 

While the study shows the general effectiveness of social correction, it also finds that miscorrections affect social media users as well: when user comments flag correct news as false, readers can perceive real news as less accurate. User comments may also cause further confusion on social media platforms.

 

The team carried out research with more than 6,600 people in the UK, Germany, and Italy (1,944 people in the UK, 2,467 in Italy and 2,210 in Germany). Respondents completed a task to assess false and true news posts on various topics such as health, climate change, and technology. The study used material that was posted on X (now Twitter), Instagram, and Facebook.

 

Researchers did not find evidence that more sophisticated corrective cues, such as corrective comments with links to fact-checking websites, were consistently and in a statistically significant way more effective than weak corrective cues, such as just a few words that flag a post as inaccurate.

 

The study, published in the journal Communications Psychology, was carried out by Florian Stoeckel, Chiara Ricchi and Jason Reifler from the University of Exeter, Sabrina Stöckli from the University of Zurich, Besir Ceka from Davidson College and Ben Lyons from the University of Utah.

 

Professor Stoeckel said: “Social corrections reduced perceived accuracy of and engagement with false news posts. We found people don’t need to write long corrective comments online when they want to flag a post as inaccurate. However, by consulting a fact-checking website before flagging a post as inaccurate, people can ensure that their correction is not in fact a miscorrection.”

 

“The simplicity of creating effective corrections can be a double-edged sword. Social media environments also include users that flag true news as false. While social corrections can be effective for false news, they may also undermine belief in true news. The findings that users can easily be affected by miscorrections emphasizes just how important digital media literacy is.”

 

Virginia Tech researchers discover that blocking an essential nutrient inhibits malaria parasite growth



The four-year study could lead to a new way to fight malaria, one of the most devastating infectious diseases in the world.


Peer-Reviewed Publication

VIRGINIA TECH

Michael Klemba 

IMAGE: 

MICHAEL KLEMBA STUDIES A PETRI DISH IN HIS LAB.

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CREDIT: PHOTO BY MAX ESTERHUIZEN FOR VIRGINIA TECH.




Living organisms often create what is needed for life from scratch.

For humans, this process means the creation of most essential compounds needed to survive. But not every living thing has this capability, such as the parasite that causes malaria, which affected an estimated 249 million people in 2022.

Virginia Tech researchers in the College of Agriculture and Life Sciences found that by preventing the malaria parasite from scavenging fatty acids, a type of required nutrient, it could no longer grow.

“The key to this breakthrough is that we were able to develop a screening method for the malaria parasite and block this process,” said Michael Klemba, associate professor of biochemistry and principal investigator on the project. “While very much in its infancy, the results could open the door to a new way to fight malaria.”

Malaria is caused while the parasite is replicating in human red blood cell and it relies on scavenging, rather than creating, to satisfy its need for fatty acids. Many fatty acids are obtained by metabolizing a class of host lipid, called lysophospholipids. However, scientists didn't know how the parasite releases fatty acids from the host lipids.

The Virginia Tech research team did experiments with infected red blood cells and found chemicals that can stop the parasite from getting the needed fatty acids. Researchers discovered that two enzymes were instrumental in breaking down host lipids to release the fatty acids the parasite needs. These enzymes work in different places: One works outside in the red blood cell, and the other works inside the parasite.

When scientists removed these two enzymes, they found that the parasite struggled to get the needed fatty acids and couldn't grow well. This was especially true when that host lipid was the only fatty acid source available. When both enzymes were stopped from working, either by changing the parasite's genes or by using drugs, the parasites couldn't grow in human blood.

This shows that breaking down the host lipid, called lysophosphatidylcholine, to get fatty acids is critical for the malaria parasite's survival in our bodies and that targeting these two enzymes could be a new way to fight malaria.

The research was published today by Proceedings of the National Academy of Sciences of the United States of America and was funded by a National Institutes of Health grant, United States Department of Agriculture Hatch funding, and through the Department of Biochemistry at Virginia Tech.

Laying the groundwork

In 2017, a study came out that showed when lysophosphatidic acid levels drop in the host that the malaria parasite, known as Plasmodium falciparum, converts into a form that can be taken up by mosquitoes. P. falciparum causes malaria while replicating in host erythrocytes, or red blood cells, and relies on scavenging rather than synthesis, or the creation of compounds, to satisfy its need for fatty acids.

This seemed to be an important environmental cue, Klemba said, and that there was also evidence that host lipids were a preferred source of fatty acids.

“There wasn't clarity on what the metabolic pathways were,” he said. “If we could show that that these metabolic pathways were useful, then that would be an important contribution to the field.”

For Klemba, this was an important question to answer and one that his lab – and students – were in a unique position to do. Two graduate students worked on the project - Jiapeng Liu ’23, now a postdoctoral scholar at Rutgers University, and Christie Dapper, a former professor at Virginia Tech. Liu was the lead author and Katherine Fike assisted with the project as a research specialist.

“There are two enzymes that are really important for this process: one is inside the parasite, and the other is exported into the host cell,” Klemba said. “Which is not typical of metabolic processes as they are typically carried out within the parasite. Why did the parasite find it useful to put one of these enzymes into the host? We have some ideas that that could be involved in host modification, which could be that the parasite remodels the red cell once it's once it's set up shop.”

The researchers found that only removing one of the two enzymes, which they named XL2 and XLH4, doesn’t do anything. Both have to be removed to inhibit parasitic growth.

Future work

There are some limitations of the discovery: The research was conducted only using a culture dish, commonly referred to as in vitro. The researchers also are not sure if the compounds used to inhibit the two enzymes are toxic.

Some level of toxicity is expected, Klemba explained, and it may be possible to engineer the toxicity out of the compounds.

“But that could be a major challenge,” he said.

In the meantime, this discovery could open the door to therapeutic treatments for malaria.

Researchers uncover a key link in legume plant-bacteria symbiosis


Peer-Reviewed Publication

AARHUS UNIVERSITY

Phosphorylation sites mapped onto the structure of SYMRK 

IMAGE: 

DARK GRAY IS THE CRYSTAL STRUCTURE AND LIGHT GRAY IS THE MODELED STRUCTURE

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CREDIT: ABEL & NØRGAARD ET AL. 2024





Legume plants have the unique ability to interact with nitrogen-fixing bacteria in the soil, known as rhizobia. Legumes and rhizobia engage in symbiotic relations upon nitrogen starvation, allowing the plant to thrive without the need for externally supplied nitrogen. Symbiotic nodules are formed on the root of the plant, which are readily colonized by nitrogen-fixing bacteria. The cell-surface receptor SYMRK (symbiosis receptor-like kinase) is responsible for mediating the symbiotic signal from rhizobia perception to formation of the nodule. The activation mechanism of the receptor was until recently unknown.

In this study, the researchers have now identified four essential phosphorylation sites that act as the catalyst for the symbiotic relationship between legume plants and nitrogen-fixing bacteria. The initial steps of the symbiotic pathway at the cell-surface are well-characterized, however, understanding of how the signal is relayed downstream has eluded the research field for years. The discovery of these essential phosphorylation sites is an important step towards translating the ability to form symbiotic relations with nitrogen fixing bacteria into crop plants.

“We knew that the receptor and its activity is essential for the establishment of symbiosis, but we didn’t know how or why. Phosphorylation is a common mechanism for regulating kinase activity, so we theorized that SYMRK function was tied to specific phosphorylations,” Nikolaj Abel explains.

Through collaborations with the lab of Ole Nørregaard Jensen at the University of Southern Denmark, several phosphorylation sites were identified in distinct regions of the SYMRK kinase. The researchers were able to narrow down the essential sites by depleting or mimicking phosphorylations in vivo. Specifically, four sites in the N-terminal region of SYMRK gave strong phenotypes when mutated.

“We explore the impact of site-specific mutations by creating receptor variants and reintroducing them into plants lacking the functional SYMRK receptor. Observing either spontaneous nodulation without rhizobia or the absence of nodulation despite their presence indicates that we’ve targeted an element crucial to the symbiotic pathway,” Nikolaj Abel elaborates.

To understand where the identified phosphorylation sites were situated on the SYMRK kinase, the researchers determined the structure of the intracellular domain of SYMRK.

“We needed to be able to map the phosphorylation sites onto a structural model of the SYMRK kinase to truly understand how these phosphorylation sites enable downstream signaling. We identified a structurally conserved motif in the N-terminal alpha-helical region which we termed ‘the alpha-I motif’. This region contains the four conserved phosphorylation sites,” Malita Nørgaard explains.

Enabling root nodule symbiosis in important crops is the aim

The long-term goal is to enable root nodule symbiosis in important crops like barley, maize and rice. These crops require large amounts of nitrogen fertilizers to grow, resulting in enormous CO2 footprints and making small-holder farmers unable to produce stable yields.

With the successful identification of phosphorylation sites crucial to initiating the nodulation program in legume plants, the researchers believe this newfound knowledge holds promising implications for translating nitrogen-fixing traits into crops.

Link to the article: 10.1073/pnas.2311522121

10.1073/pnas.2311522121

 

For more information, please contact

Postdoc Dr. Nikolaj Birkebæk Abel - nikolaj.abel@mbg.au.dk

PhD-student Malita Malou Malekzadeh Nørgaard - malitamn@mbg.au.dk

Associate Professor Kasper Røjkjær Andersen - kra@mbg.au.dk

 

Department of Molecular Biology and Genetics
Aarhus University, Denmark

 

The hidden rule for flight feathers—and how it could reveal which dinosaurs could fly


Peer-Reviewed Publication

FIELD MUSEUM

Lark wing feathers 

IMAGE: 

THE WING, HIGHLIGHTING THE FLIGHT FEATHERS, OF TEMMINCK'S LARK. 

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CREDIT: YOSEF KIAT






Birds can fly— at least, most of them can. Flightless birds like penguins and ostriches have evolved lifestyles that don’t require flight. However, there’s a lot that scientists don’t know about how the wings and feathers of flightless birds differ from their airborne cousins. In a new study in the journal PNAS, scientists examined hundreds of birds in museum collections and discovered a suite of feather characteristics that all flying birds have in common. These “rules” provide clues as to how the dinosaur ancestors of modern birds first evolved the ability to fly, and which dinosaurs were capable of flight.

Not all dinosaurs evolved into birds, but all living birds are dinosaurs. Birds are members of the group of dinosaurs that survived when an asteroid hit the Earth 66 million years ago. Long before the asteroid hit, some of the members of a group of dinosaurs called Penneraptorans began to evolve feathers and the ability to fly. 

Members of the Penneraptoran group began to develop feathers before they were able to fly; the original purpose of feathers might have been for insulation or to attract mates. For instance, Velocirpator had feathers, but it couldn’t fly. 

Of course, scientists can’t hop in a time machine to the Cretaceous Period to see whether Velociraptors could fly. Instead, paleontologists rely on clues in the animals’ fossilized skeletons, like the size and shape of arm/wing bones and wishbones, along with the shape of any preserved feathers, to determine which species were capable of true, powered flight. For instance, the long primary feathers along the tips of birds’ wings are asymmetrical in birds that can fly, but symmetrical in birds that can’t.

The quest for clues about dinosaur flight led to a collaboration between Jingmai O’Connor, a paleontologist at the Field Museum in Chicago, and Yosef Kiat, a postdoctoral researcher at the Field. 

“Yosef, an ornithologist, was investigating traits like the number of different types of wing feathers in relation to the length of arm bone they attach to, and the degree of asymmetry in birds’ flight feathers,” said O’Connor, the museum’s associate curator of fossil reptiles, who specializes in early birds. “Through our collaboration, Yosef  is able track these traits in fossils that are 160-120 million years old, and therefore study the early evolutionary history of feathers.”

Kiat undertook a study of the feathers of every order of living birds, examining specimens from 346 different species preserved in museums around the world. As he looked at the wings and feathers from hummingbirds and hawks, penguins and pelicans, he noticed a number of consistent traits among species that can fly. For instance, in addition to asymmetrical feathers, all the flighted birds had between 9 and 11 primary feathers. In flightless birds, the number varies widely— penguins have more than 40, while emus have none. It’s a deceptively simple rule that’s seemingly gone unnoticed by scientists.

“It's really surprising, that with so many styles of flight we can find in modern birds, they all share this trait of having between 9 and 11 primary feathers,” says Kiat. “And I was surprised that no one seems to have found this before.”

By applying the information about the number of primary feathers to the overall bird family tree, Kiat and O’Connor also found that it takes a long time for birds to evolve a different number of primary feathers. “This trait only changes after really long periods of geologic time,” says O’Connor. “It takes a very long time for evolution to act on this trait and change it.”

In addition to modern birds, the researchers also examined 65 fossil specimens representing 35 different species of feathered dinosaurs and extinct birds. By applying the findings from modern birds, the researchers were able to extrapolate information about the fossils. “You can basically look at the overlap of the number of primary feathers and the shape of those feathers to determine if a fossil bird could fly, and whether its ancestors could,” says O’Connor.

For instance, the researchers looked at the feathered dinosaur CaudipteryxCaudipteryx had 9 primary feathers, but those feathers are almost symmetrical, and the proportions of its wings would have made flight impossible. The researchers said it’s possible that Caudipteryx had an ancestor that was capable of flight, but that trait was lost by the time Caudipteryx arrived on the scene. Since it takes a long time for the number of primary feathers to change, the flightless Caudipteryx retained its 9 primaries. Meanwhile, other feathered fossils’ wings seemed flight-ready— including those of the earliest known bird, Archaeopteryx, and Microraptor, a tiny, four-winged dinosaur that isn’t a direct ancestor of modern birds.

Taken a step further, these data may inform the conversation among scientists about the origins of dinosaurian flight. “It was only recently that scientists realized that birds are not the only flying dinosaurs,” says O’Connor. “And there have been debates about whether flight evolved in dinosaurs just once, or multiple separate times. Our results here seem to suggest that flight only evolved once in dinosaurs, but we have to really recognize that our understanding of flight in dinosaurs is just beginning, and we’re likely still missing some of the earliest stages of feathered wing evolution.”

“Our study, which combines paleontological data based on fossils of extinct species with information from birds that live today, provides interesting insights into feathers and plumage—one of the most interesting evolutionary novelties among vertebrates. Thus, it helps us learn about the evolution of these dinosaurs and highlights the importance of integrating knowledge from different sources for an improved understanding of evolutionary processes," says Kiat.

“Theropod dinosaurs, including birds, are one of the most successful vertebrate lineages on our planet,” says O’Connor. “One of the reasons that they're so successful is their flight. One of the other reasons is probably their feathers, because there's such versatile structures. So any information that can help us understand how these two important features co-evolved that led to this enormous success is really important.”


  

The primary feathers of a penguin.

Blackburnian Warblers in the collections of the Field Museum used in this study.

Fossil showing the wing and feathers of the prehistoric bird Confuciusornis.

Fossil showing the wings and feathers of the dinosaur Microraptor.

CREDIT

Yosef Kiat


 

Trail cameras track ‘critically low’ New York bobcat population

Peer-Reviewed Publication

CORNELL UNIVERSITY





CORNELL UNIVERSITY MEDIA RELATIONS OFFICE

FOR RELEASE: Feb. 13, 2024

Trail cameras track ‘critically low’ New York bobcat population

ITHACA, N.Y. – With thousands of strategically placed cameras covering more than 27,000 square miles in central and western New York, biologists have evidence that bobcat populations remain critically low in central and western New York state.

Despite reports of recent recoveries elsewhere, bobcat populations in New York State displayed low occupancy, according to research based on years of observation by Cornell University and the New York State Department of Environmental Conservation. Their latest report was published February in Biological Conservation.

“Bobcats probably displayed one of the more concerning trends that we saw,” said lead author Joshua Twining, a postdoctoral researcher in the New York Cooperative Fish and Wildlife Research Unit, which is a U.S. Geological Survey unit at Cornell led by Angela Fuller.

Due to the very low occupancy observed, “it would be impossible for us to detect a decline in bobcat occupancy in this region without the species being extirpated,” Twining said.

He explained that New York has variable hunting and trapping seasons for bobcats, depending on the region. Some areas surveyed were not open to bobcat hunting or trapping and he said that places along the Pennsylvania border have been open to bobcat harvest since 2013.

The researchers also tracked occupancies for several other animals. White-tailed deer in the region flourish; red fox and coyote populations remain abundant and stable; and eastern wild turkey and gray fox numbers remain low.

Funding was provided by the New York State Department of Environmental Conservation, from a Federal Aid in Wildlife Restoration Grant.

For additional information, read this Cornell Chronicle story.

Cornell University has dedicated television and audio studios available for media interviews.

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