Sunday, February 01, 2026

Sepsis study IDs simple ways to save lives in Africa




University of Virginia Health System





Tuberculosis (TB) is a major unrecognized cause of deadly sepsis among people with HIV in Africa, a sweeping new study reveals. Beginning treatment for TB immediately – even before sepsis patients are diagnosed with TB – could save countless lives, the researchers say.

The ATLAS study, conducted over five years at hospitals in Tanzania and Uganda, has found that more than half of the hundreds of patients enrolled in the study had TB and that immediate treatment increased their chances of survival significantly. 

The first-of-its kind study was conducted by researchers at the University of Virginia School of Medicine, Tulane School of Medicine, University of Minnesota and their collaborators in Africa, including leading HIV and tuberculosis physician-scientists Stellah Mpagama from Tanzania’s Kibong’oto Infectious Diseases Hospital and Conrad Muzoora from Uganda’s Mbarara University of Science and Technology.

“In life-threatening sepsis in other parts of the world, a germ causing infection is either not found or is commonly caused by bacteria from urinary tract infections or pneumonia,” said UVA Health researcher Scott Heysell, MD, MPH, who co-led the study. “Instead, we found a treatable form of infection in the majority of people that could be targeted immediately when they presented to care.”

That would enhance the treatment patients receive, improve outcomes and, ultimately, save lives.

“In light of the 30-50% mortality associated with sepsis, our findings suggest that clinicians who work in African settings where HIV and TB are common should probably immediately provide TB treatment to patients who present to hospital with sepsis,” said UVA’s Christopher C. Moore, MD, co-lead investigator. “Given Africa’s disproportionate burden of global sepsis, implementation of this early treatment strategy could result in a substantial reduction in sepsis-related mortality across the region.”

Stopping Deadly Sepsis

Sepsis is dangerous full-body inflammation that can take hold when a person’s immune response spirals out of control in response to an infection, potentially causing organ failure and death. It is the leading cause of death worldwide, and people living with HIV are particularly vulnerable. 

The ATLAS study was launched to shed light on the causes of sepsis among people living with HIV in Africa and to find better ways to treat it. After evaluating more than 400 patients with sepsis, the study found that the predominant – and often unrecognized – cause was tuberculosis. More than half of participants in the randomized trial ultimately were found to be suffering from TB.

Further, the researchers found that the highest survival rate was among the patients who received immediate treatment for TB, regardless of whether they had been formally diagnosed. Patients who did not receive TB treatment until their diagnosis had been confirmed, on the other hand, were more likely to die. 

This partly reflects the difficulty of confirming a TB diagnosis in Eastern Africa, as the condition can be detectable only with sophisticated blood tests that are often unavailable or delayed, the researchers say. Further, “many of these patients have multiple infections at the same time, which makes their care more challenging,” Mpagama noted. 

Current treatment guidelines generally call for TB treatment to be initiated only after a confirmed diagnosis or if the patient has not improved after receiving standard antimicrobial therapy for three to five days. But beginning TB treatment immediately, even without a diagnosis, could save many lives every year, the researchers say.

“This study has the potential to provide a blueprint for evidence-based antimicrobial approach for sepsis therapy in TB-endemic areas,” said Tulane researcher Eva Otoupalova, MD. “My hope is that this work will help lower the extremely high mortality of patients with TB-sepsis.” 

Recent funding from the National Institutes of Health is allowing the researchers to continue their work in Uganda and Tanzania. They are launching a new trial to determine whether hydrocortisone to reduce inflammation and/or immediate treatment of TB and other bacterial pathogens will improve survival in patients with HIV-related sepsis.

About the Findings

The researchers have published their findings in a pair of papers in the scientific journals Lancet Infectious Diseases and eClinicalMedicineThe articles are open access, meaning they are free to read.

The ATLAS study was conducted by a team of more than 30 doctors, nurses, pharmacists, study coordinators and statisticians.

The research was funded by NIH grants U01 AI150508, D43 TW012247, R21 AI172637 and K24 AI187675.

To keep up with the latest medical news from UVA and UVA’s new Paul and Diane Manning Institute of Biotechnology, bookmark the Making of Medicine blog at https://makingofmedicine.virginia.edu.

Biochemistry lab at IU Bloomington finds chemical solution for tackling antibiotic resistance 



Indiana University
Zhiyu Zang 

image: 

After leaving the Gerdt Lab for a post-doctoral position at the Swiss Federal Technology Institute of Lausanne, Zhiyu Zang decided to focus on the human immune system. Photo courtesy Zhiyu Zang. 

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Credit: Photo courtesy Zhiyu Zang





Antimicrobial resistance — when bacteria and fungi defend themselves against the drugs design to kill them — is an urgent threat to global public health, according to the Centers for Disease Control and Prevention.

To combat this threat, the Gerdt Lab at Indiana University Bloomington studies how to weaken bacteria’s defenses against viruses.

“Bacteria get sick, too,” said J.P. Gerdt, assistant professor of chemistry in the College of Arts and Sciences at IU Bloomington. “Our lab tries to understand how their immune systems work so we can figure out how to inhibit them.” 

Bacteriophages, the viruses that attack and kill bacteria,  can be a useful alternative to antibiotics. Antibiotics kill not just pathogens but also good bacteria, but bacteriophages can be deployed in a more targeted way to kill just one problematic strain of bacteria, leaving beneficial microbes untouched.

Bacteriophages are also useful in agriculture because they provide a more targeted approach to killing bacteria. Whereas many antibiotics tend to kill not just infection- and disease-causing bacteria but good bacteria as well, bacteriophages can be deployed to kill just one strain of bacteria.

However, just as bacteria have evolved antibiotic resistance, they can also become immune to bacteriophages.

That is where the Gerdt Lab’s work comes in. Former lab member Zhiyu Zang, now a post-doctoral candidate at the Swiss Federal Technology Institute of Lausanne, discovered a chemical molecule that when paired with the bacteriophage helps the virus overwhelm a bacteria’s immune system.

This finding was revealed in Zang and Gerdt’s paper “Chemical inhibition of a bacterial immune system,” recently published in Cell Host and Microbe.

While antibiotics will likely remain the first line of defense for human bacterial infections, the Gerdt Lab’s discovery could still apply to hard-to-treat infections in humans. It could also be applied in places like agriculture, where antibiotic overuse can worsen the spread of antibiotic resistance.

A needle in a haystack

Just as millions of bacteria strains exist, there are potentially as many chemical molecules that could be deployed to inhibit bacterial immune systems. Gerdt hopes that in 10 to 15 years, his lab will create a library of inhibitors for different bacteria.

Gerdt and Zang’s strategy with this paper was to begin research with a bacterium that was relatively easy and safe for undergraduates to study. Students like Olivia Duncan, who was an undergraduate when she worked in Gerdt’s lab, helped Zang and Gerdt find molecules that chemically inhibited that bacterium’s immune system.

“Our study is important not just because we found the first example of a small molecule that can inhibit a bacteria’s immune system,” Zang said. “It’s also important because the immune system we’re studying in this paper is present in around 2,000 different bacteria species.”

This finding allows them to develop general rules and tools for a targeted approach to pathogenic bacteria with similar immune systems like  Pseudomonas aeruginosa or Staphylococcus aureus, both often resistant to antibiotics and the cause of many deadly hospital-acquired infections.

Duncan, who is the second author on the paper and currently a Ph.D. student at Cornell University, worked with Zang to identify a chemical molecule that helped a virus evade the bacterium’s immune system.

“Our goal is to have a collection of inhibitors that will work for different immune systems,” Gerdt said. “We hope that this paper will be a catalyst for other labs to work on this with us as a community. That’s what makes this paper so exciting: We’re starting something new and seeing where it takes off.”

Nasal vaccine combats bird flu infection in rodents



Study shows novel vaccine design and delivery protect against H5N1 variants


WashU Medicine







Since it was first detected in the U.S. in 2014, H5N1 avian influenza, commonly known as bird flu, has jumped from wild birds to farm animals and then to people, causing more than 70 human cases in the U.S. since 2022, including two fatalities. The virus continues to circulate among animals, giving it the opportunity to develop the ability to spread among humans and potentially cause another pandemic.

To mitigate the risk of such an event, researchers at Washington University School of Medicine in St. Louis developed an intranasal vaccine that elicited strong immune responses when tested in hamsters and mice and prevented infections in exposed animals. Because pre-existing immunity from prior seasonal influenza infection or vaccination could diminish the efficacy of H5N1 vaccines, the team also confirmed their vaccine remained effective regardless of prior flu exposure.

The results are published Jan. 30 in Cell Reports Medicine.

“This particular version of bird flu has been around for some time, but the unique and totally unexpected event where it jumped across species into dairy cows in the United States was a clear sign that we should prepare for the event that a pandemic may occur,” said Jacco Boon, PhD, a professor in the WashU Medicine John T. Milliken Department of Medicine and co-senior author of the study. “Our vaccine to the nose and upper airway — not the shot-in-the-arm vaccine people are used to — can protect against upper respiratory infection as well as severe disease. This could provide better protection against transmission because it protects against infection in the first place.”

Optimizing vaccine efficacy

Although a bird flu vaccine already exists, it was developed based on older strains of the virus, may not be effective against current variants and is not widely available. To create a new vaccine to better protect against bird flu, Boon and his collaborators leveraged the nasal vaccine technology developed at WashU Medicine by study co-authors Michael S. Diamond, MD, PhD, the Herbert S. Gasser Professor of Medicine, and David T. Curiel, MD, PhD, a professor of radiation oncology. A COVID-19 vaccine based on their approach has been available in India since 2022 and was approved for clinical testing in the U.S. last year.

Strong immune responses depend on how well the body can recognize a pathogen. For the H5N1 vaccine’s antigen, Boon and co-author Eva-Maria Strauch, PhD, an associate professor of medicine who specializes in antivirals and protein design, selected specific proteins from H5N1 representative of circulating bird flu viruses that had infected humans. They then created an optimal antigen — the bit of a pathogen the immune system reacts to — using common features of these viral proteins and inserted the antigen into a harmless, non-replicating virus called an adenovirus, which acts as the delivery vehicle for the vaccine. This approach to antigen design and adenovirus delivery is similar to the COVID-19 nasal vaccine.

The researchers tested the nasal vaccine in hamsters and mice and found near-complete protection against infection. In comparison, and as expected, current seasonal influenza vaccines provided little protection against H5N1 infection. Both animal models showed better protection against H5N1 infection from the nasal spray vaccine than from the same formula administered through traditional intramuscular immunization. Further, strong protection emerged even when the nasal vaccine was given as a low dose against a high exposure to bird flu.

Nasal delivery of the vaccine generated a strong immune response throughout the body, especially in the nose and respiratory tract. A particular advantage of this compared to intramuscular immunization, Boon noted, is that it provides much better protection against infection in the nose and lungs and therefore likely protects against transmission as well as against severe disease.

“We’ve shown that this nasal vaccine delivery platform we conceived, designed and conducted initial testing on at WashU Medicine can prevent H5N1 infection from taking hold in the nose and lungs,” said Diamond, the co-senior author of the study. “Delivering vaccine directly to the upper airway where you most need protection from respiratory infection could disrupt the cycle of infection and transmission. That’s crucial to slowing the spread of infection for H5N1 as well as other flu strains and respiratory infections.”

In addition to testing the vaccine’s effectiveness, the researchers investigated whether existing immunity from other flu vaccines would negatively affect the H5N1 vaccine’s performance. They found that even with pre-existing immunity, the nasal vaccine still provided strong protection, a critical feature if the vaccine is to be of practical use since most individuals, except young children, have many prior immune experiences with influenza virus or vaccines.

The researchers said the next steps are to conduct additional studies of the vaccine in animals and in organoids representing human immune tissue, as well as to develop new versions of the vaccine that further minimize the effects of prior seasonal influenza infection and that promote greater antiviral responses.

Ying B, Pyles K, Darling TL, Seehra K, Pham T, Huang LC, Harastani HH, Sharma A, Desai P, Kashentseva EA, Curiel DT, Peters B, Case JB, Strauch EM, Diamond MS, Boon ACM. An intranasal adenoviral-vectored vaccine protects against highly pathogenic avian influenza H5N1 in naïve and antigen-experienced animals. Cell Reports Medicine. Jan. 30, 2026.

This study was supported by the Cooperative Center for Human Immunology (U19AI181103) and the Center for Research on Structural Biology of Infectious Diseases (75N93022C00035).

The Boon laboratory has received funding from Novavax Inc for the development of an influenza virus vaccine, and unrelated funding support from AbbVie Inc. M.S.D. is a consultant for or on the Scientific Advisory Board of Inbios, IntegerBio, Akagera Medicines, GlaxoSmithKline, Merck, and Moderna. The Diamond laboratory has received unrelated funding support in sponsored research agreements from Moderna.

About WashU Medicine

WashU Medicine is a global leader in academic medicine, including biomedical research, patient care and educational programs with more than 3,000 faculty. Its National Institutes of Health (NIH) research funding portfolio is the second largest among U.S. medical schools and has grown 83% since 2016. Together with institutional investment, WashU Medicine commits well over $1 billion annually to basic and clinical research innovation and training. Its faculty practice is consistently among the top five in the country, with more than 2,000 faculty physicians practicing at 130 locations. WashU Medicine physicians exclusively staff Barnes-Jewish and St. Louis Children’s hospitals — the academic hospitals of BJC HealthCare — and Siteman Cancer Center, a partnership between BJC HealthCare and WashU Medicine and the only National Cancer Institute-designated comprehensive cancer center in Missouri. WashU Medicine physicians also treat patients at BJC’s community hospitals in our region. With a storied history in MD/PhD training, WashU Medicine recently dedicated $100 million to scholarships and curriculum renewal for its medical students, and is home to top-notch training programs in every medical subspecialty as well as physical therapy, occupational therapy, and audiology and communications sciences.

 

Global Virus Network statement on Nipah virus outbreak




Global Virus Network





Tampa, FL, USA, January 30, 2026:  The Global Virus Network (GVN), representing eminent human and animal virologists from more than 90 Centers of Excellence and Affiliates in over 40 countries dedicated to advancing research, collaboration, and pandemic preparedness, is monitoring reports of a  Nipah virus outbreak in India and emphasizes that such cases, while very concerning and serious, are not unexpected or unprecedented. Sporadic Nipah virus infections have occurred almost annually in parts of South Asia, particularly in India and Bangladesh, and do not indicate a new or escalating global threat.

Nipah virus is a zoonotic pathogen carried by fruit bats, with human infections typically linked to localized exposure, such as contact with infected animals or contaminated food. Human-to-human transmission can occur but remains rare and usually requires very close contact during acute illness.

“Overall, the risk of regional or global spread of Nipah virus is very low,” said Professor Linfa Wang, PhD, Director of the GVN Center of Excellence at Duke-NUS Medical School in Singapore. “Similar outbreaks have occurred repeatedly in India and Bangladesh, driven largely by specific cultural and environmental factors rather than sustained human transmission.”

Countries with strong public-health systems and surveillance capacity are well positioned to mitigate the risk posed by Nipah virus through early detection, clinical awareness, and rapid diagnostics.

GVN is monitoring the situation closely through its network of Affiliates and Centers of Excellence, including the Institute of Advanced Virology (IAV) in Kerala, a GVN Affiliate through the Centers of Excellence at University College Dublin and Hokkaido University. Researchers at IAV are engaged in Nipah virus research, surveillance, and development of new diagnostic testing.

While there are currently no approved vaccines or antiviral treatments for Nipah virus, promising candidates have shown effectiveness in animal studies. Professor Wang said, “Progress depends on sustained public-good investment and international cooperation.”

The Global Virus Network underscores that the current outbreak does not represent a global emergency, but it does highlight the ongoing importance of surveillance, diagnostics, and globally connected scientific networks to detect and defend against emerging infectious threats.


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About the Global Virus Network

The Global Virus Network (GVN) is a worldwide coalition comprising 90+ Virology Centers of Excellence and Affiliates across 40+ countries, whose mission is to facilitate pandemic preparedness against viral pathogens and diseases that threaten public health globally. GVN advances knowledge of viruses through (i) data-driven research and solutions, (ii) fostering the next generation of virology leaders, and (iii) enhancing global resources for readiness and response to emerging viral threats. GVN provides the essential expertise required to discover and diagnose viruses that threaten public health, understand how such viruses spread illnesses, and facilitate the development of diagnostics, therapies, and treatments to combat them. GVN coordinates and collaborates with local, national, and international scientific institutions and government agencies to provide real-time virus informatics, surveillance, and response resources and strategies.  GVN's pandemic preparedness mission is achieved by focusing on Education & Training, Qualitative & Quantitative Research, and Global Health Strategies & Solutions. The GVN is a non-profit 501(c)(3) organization. For more information, please visit www.gvn.org.