Thursday, September 17, 2026

 

Fungi neutralize spruce defense mechanisms with sugar


A newly discovered detoxification strategy employed by fungi disarms spruce defense compounds by binding a sugar to them, which makes spruce trees more susceptible to bark beetle attacks




Max Planck Institute for Chemical Ecology

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When bark beetles invade spruce trees, they carry various fungal species with them. These fungi multiply in the tunnels, which facilitates the beetles’ invasion.

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Credit: Benjamin Weiss, Max Planck Institute for Chemical Ecology





Well-protected chemically, but not invincible: How fungi and bark beetles penetrate spruce bark

Spruce trees have highly effective chemical defenses against herbivores and pathogens. The phloem, the living bark tissue responsible for transporting nutrients produced in the needles to the roots, is among the chemically best-protected plant tissues. The phloem lies directly beneath the protective bark and surrounds the wood. The phloem tissue contains protective chemical substances, particularly phenolic compounds, which can account for up to five percent of the bark’s dry weight. Nevertheless, numerous fungi—ranging from pathogens to symbionts of bark beetles—successfully colonize this well-defended tissue. "We wanted to understand the biochemical tricks these fungi use to overcome such a hostile chemical environment, especially since some of these fungi may contribute to massive bark beetle infestations destroying European forests," says study lead author Ruo Sun, head of the project group Metabolism of spruce tree defenses.

Fungi can metabolize spruce defense compounds

The research team investigated the metabolism of various fungi using molecular biological techniques and chemical analyses. They analyzed the metabolic products of fungi grown on real spruce bark or artificial culture media. In the process, they discovered that certain fungi produce new, previously unknown compounds—but only when exposed to the chemicals found in spruce. The scientists cultivated large quantities of these fungi, isolated the compounds, and used high-precision methods, such as nuclear magnetic resonance (NMR) spectroscopy, to determine their exact structure. Through this process, the scientists demonstrated that while some fungi break down spruce's toxic defense compounds, the resulting products remain toxic. Only two species of fungi go a step further by attaching a ribose, a simple sugar with five carbon atoms, to these degradation products. This process, known as ribosylation, reduces toxicity and prevents the toxic substances from being reactivated by the metabolism of another organism. The fungus that exhibited the strongest ribosylation ability grew best on spruce bark. This suggests that this ability provides a crucial survival advantage to the fungus.

"One of the major challenges was identifying the sugar component of the molecule as ribose and not glucose or another sugar. The analytical data showed that a pentose, or a sugar with five carbon atoms, was bound. However, based on the data, we could not distinguish between ribose, xylose, and arabinose since they all have the same molecular weight. It was only through extensive nuclear magnetic resonance (NMR) analyses that we were able to confirm the presence of ribose and its exact configuration,” said co-author Baoyu Hu, a doctoral student at the institute.  

In ribosylation, the sugar molecule ribose is attached to specific molecules within the cell. This small change can have significant effects on processes such as cell-to-cell communication, DNA repair, and metabolic regulation. Compared to other sugar modifications, such as glucosylation, ribosylation has been less common and less studied. "We suspect it has been overlooked until now because most researchers assumed that detoxification involved the attachment of glucose. Identifying ribose requires chemical analyses, including NMR, to distinguish it from glucose," explains Yoko Nakamura, a research associate in the Department of Natural Product Biosynthesis who conducted the NMR analyses. 

Fungal consortia as the key to overcoming spruce defense mechanisms

Not all fungi can neutralize defense compounds that contain ribose. The scientists examined twelve fungal species associated with bark beetles, including some that are not transmitted by beetles. Only two species, Coprinellus radians and Cylindrobasidium ipidophilum, exhibited this ability. This may be because ribosylation requires a great deal of energy. The fungus must "sacrifice" ribose for detoxification, which could hinder its growth. This is why this strategy is found in only a few fungal species, where it is, however, particularly effective.

Researchers have long been familiar with one of the two ribosylating fungi, Cylindrobasidium ipidophilum, found in the tunnels of bark beetles. However, the role of this symbiont remained unclear until now. The study reveals not only the ability to neutralize the spruce's defense mechanisms, but also the underlying mechanisms behind this detoxification. By neutralizing the spruce’s defense substances, it promotes the growth of other fungi associated with bark beetles. "If these fungi break down different parts of the spruce's defense system, they could collectively form a consortium that overcomes the spruce's defense mechanisms, thus holding the key to successful bark beetle colonization," says Jonathan Gershenzon, director of the Department of Biochemistry.

In future studies, the researchers plan to identify the enzyme responsible for ribosylation and determine if this ability exists in other fungal species. They also want to determine if ribosylation influences the composition of the microbiome, or the totality of microorganisms, in the bark beetles’ feeding tunnels and consequently, the beetles’ fitness. These findings could help the forestry sector develop new strategies for controlling bark beetle infestations. One possible approach would be to make specific changes to the microbial communities within spruce trees.

 

Study: Why colder temps can be better for removing ice






University of Texas at Dallas

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University of Texas at Dallas mechanical engineering research associate Dr. Yao Ren exposes an ice-covered metal surface to dry ice to cool it further. Researchers found that a material’s thermal properties play a critical role in determining whether ice remains attached to a surface — a discovery that may lead to the design of future deicing systems for aircraft and wind turbines.

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Credit: The University of Texas at Dallas





Deicing technologies often rely on heat to melt ice. But University of Texas at Dallas researchers have found that, under extreme cold, making ice even colder can weaken its grip on surfaces.

“Our work shows that under extremely cold conditions, rapid cooling can actually make ice much easier to remove,” said Dr. Hongbing Lu, professor of mechanical engineering and the Louis Beecherl Jr. Chair in the Erik Jonsson School of Engineering and Computer Science.

The discovery, published online May 29 in the journal Newton, reveals that a material’s thermal properties play a critical role in determining whether ice remains attached to a surface. The finding could guide the design of future deicing systems for aircraft, wind turbines and other applications in extreme cold.

Lu, who directs the Mechanics of Advanced Materials Laboratory, is a co-corresponding author of the study with Dr. Xianming “Simon” Dai, associate professor of engineering technology and industrial distribution at Texas A&M University and a former associate professor of mechanical engineering at UT Dallas.

Ice accumulation on aircraft, wind turbines and power infrastructure can ground flights, reduce energy production and damage equipment. While heating can be an effective method for removing ice, supplying enough heat in very cold environments can be difficult and energy intensive.

In addition to using heat to melt ice, deicing procedures also can involve changing the chemistry of surfaces to prevent ice from sticking. Those methods, however, become less effective in extremely cold conditions, when ice still can form strong bonds with the surface.

Cracks formed in the ice on this metal sample show how rapidly cooling ice can weaken its grip on the surface in extreme-cold conditions.

UT Dallas researchers made their discovery while conducting experiments to develop ice-resistant surfaces for cold environments.

The team cooled ice on metal, glass and plastic surfaces to minus 76 degrees Fahrenheit (minus 60 degrees Celsius) to investigate whether rapid temperature changes could weaken ice adhesion. Many materials, including solid ice, contract as they get colder, but how much they change size depends on the material.

Metal and glass have similar thermal expansion properties, so researchers expected the ice to behave similarly on both surfaces. Instead, the ice released easily from the cooled metal but remained firmly attached to the glass.

At first, the result didn’t make sense.

“It puzzled us for a long time,” Lu said.

As team members looked for explanations for the unexpected behavior, they determined that the thermal conductivity of the surface played a critical role in whether the ice would detach.

In particular, the way a surface transfers heat determines the temperature change at the ice-surface interface. In general, materials that transfer heat more efficiently can cool the ice more rapidly.

“We determined that the observed behavior is the result of differences in thermal conductivity of the substrate,” Lu said. “So, simply put, the ice touching steel gets colder much faster than ice touching glass.”

Because the metal conducted heat more efficiently than glass or plastic, the ice on the metal surface cooled and contracted more than on the other surfaces. This created stresses that fractured the ice, reducing its adhesion to nearly zero.

“The ice wants to shrink more than the steel does, but because they are bonded together, the steel holds it back, putting the ice under tensile stress,” Lu said.

The study’s findings challenge conventional thinking by showing that the speed at which a surface conducts heat is an important factor in determining whether ice will detach.

“On a surface with very high thermal conductivity, we don’t want to warm the ice — we may actually want to cool it,” Lu said. “The larger temperature drop creates greater stresses in the ice, which, combined with the mismatch in how the materials contract, can cause the ice to fracture.”

The researchers developed a model that predicts how different materials will behave during rapid cooling, which could help engineers design future deicing systems.

The researchers also tested composite materials relevant to aircraft and wind turbine blades and found that carbon fiber composites, which have higher thermal conductivity than glass fiber composites, created weaker ice interfaces, making ice easier to detach.

Although additional research will be needed before the approach could be incorporated into practical deicing systems, the findings suggest that in extremely cold environments, making ice colder rather than warmer may be a better approach.

“Conventional wisdom says we need to introduce heat,” Lu said. “In some cases, however, the colder the better.”

Other UT Dallas-affiliated authors of the article were Jyotirmoy Sarma MS’18, PhD’22; Dylan Boylan PhD’25; and mechanical engineering research associate Dr. Yao Ren; from Texas A&M, postdoctoral researcher Deepak Monga PhD’24 and graduate student Meiying He contributed to the work.

Lu received funding for the research from the U.S. Department of Energy (DOE) (NA0003962, NA0003525) and the National Science Foundation (NSF) (2219347). Dai received support from the Army Research Office (W911NF1910416), DOE (EE0011217), the Defense Advanced Research Projects Agency (D23AP00160) and the NSF (2044348).


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Dr. Yao Ren holds an ice-covered metal sample to demonstrate how the ice forms cracks when exposed to even colder temperatures.

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Cracks formed in the ice on this metal sample show how rapidly cooling ice can weaken its grip on the surface in extreme-cold conditions.

Credit

The University of Texas at Dallas







 

Study challenges estimates used to guide Atlantic menhaden fishing



Reanalysis of a historic tagging study could help managers better balance commercial harvests with the needs of coastal food webs




University of Miami Rosenstiel School of Marine, Atmospheric, and Earth Science

Study challenges estimates used to guide Atlantic menhaden fishing

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Atlantic menhaden (Brevoortia tyrannus) form large schools in the Atlantic Ocean and bay areas. Photo: NOAA Fisheries

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Credit: NOAA Fisheries






Virginia Key, Fl. — Atlantic menhaden (Brevoortia tyrannus) supports a major commercial fishery along the U.S. East Coast and serves as essential prey for fishes, seabirds, and marine mammals, may be less able to sustain fishing pressure than some assessments suggest. A new study finds that a key estimate of deaths from natural causes was substantially overstated, potentially making the population appear more productive than its biology supports.

Led by Jerald Ault, professor emeritus at the University of Miami Rosenstiel School of Marine, Atmospheric, and Earth Science, with co-author Jiangang Luo, a scientist at the Rosenstiel School’s Cooperative Institute for Marine and Atmospheric Studies, the study revisits a landmark federal tagging experiment. The research, published in the journal Fisheries Research, examines how historical records and assumptions about tag recovery influence estimates used to guide fisheries management.

Why it matters

Managers rely on population assessments to determine how much fishing a species can sustain. A central input is natural mortality, the rate at which fish die from causes other than fishing. Setting that rate too high can underestimate fishing’s impact and overestimate the size of the breeding population, leading to overly optimistic harvest advice.

“Getting this number right matters for both the fishery and the coastal ecosystems that depend on menhaden,” said Ault. “If natural mortality is set too high, the population can appear able to support more fishing than its biology allows.”

The researchers estimated a natural mortality rate of 0.50 per year, less than half the 1.17 estimate reported in a 2019 reanalysis by Liljestrand et al., which was incorporated into the SEDAR 69 benchmark stock assessment by the Atlantic States Marine Fisheries Commission. The new result was also substantially below the corrected value of 0.92 adopted in a 2025 stock assessment update.

Ault and Luo returned to original records from a federal tagging program conducted from 1966 through 1971 along the Atlantic coast, from Massachusetts to Florida. The experiment involved more than 1 million tagged menhaden and more than 100,000 recovered tags.

Over approximately three years, they reconstructed two versions of the historical data, checked release and recovery counts, rebuilt fishing-effort records and examined how tags were detected at fish-processing plants.

“Our investigation identified discrepancies involving the numbers of released and recovered tagged fish, reconstruction of historical fishing effort, treatment of tag-detection efficiency at processing plants, and aspects of the statistical model,” said Ault.

A critical issue was the performance of magnets used to recover metal tags from harvested fish. Detection varied widely among plants and over time. After correcting the underlying records, the researchers found that accounting for this variation was the principal reason their mortality estimate differed from earlier analyses.

Models that allowed tag-detection efficiency to vary by location and month better matched the recovery records. Both reconstructed datasets produced natural mortality estimates near 0.50 per year. Additional computer simulations tested uncertainty in the assumptions, with the best-fitting results consistently supporting a similar value.

The estimate also aligned with earlier research and biological evidence showing that Atlantic menhaden historically lived at least 10 years.

The findings concern a historical estimate, rather than a newly observed change in survival. The authors recommend that future assessments evaluate natural mortality values centered at 0.50 per year while accounting for uncertainty. The study does not establish a new catch limit.

“If natural mortality is high, fishing appears to account for a smaller share of population change. If it is closer to 0.5, as this study and earlier historical estimates suggest, fishing may account for a larger share of the losses,” added Ault. “For a species that is both heavily harvested and ecologically central, that distinction matters not only to the menhaden fishery but to the many managed predators that rely on menhaden.”

The study titled “Investigation of Atlantic menhaden mortality rates” was published on September 16, 2026 in the journal Fisheries Research. The authors are Jerald S. Ault and Jiangang Luo of the University of Miami Rosenstiel School.

About the University of Miami and Rosenstiel School of Marine, Atmospheric and Earth Science

 The University of Miami is a private research university and academic health system with a distinct geographic capacity to connect institutions, individuals, and ideas across the hemisphere and around the world. The University’s vibrant academic community comprises 12 schools and colleges serving more than 19,000 undergraduate and graduate students in more than 180 majors and programs. Located within one of the most dynamic and multicultural cities in the world, the University is building new bridges across geographic, cultural, and intellectual borders, bringing a passion for scholarly excellence, a spirit of innovation, and a commitment to tackling the challenges facing our world. The University of Miami is a member of the prestigious Association of American Universities (AAU).

 Founded in 1943, the Rosenstiel School of Marine, Atmospheric, and Earth Science is one of the world’s premier research institutions in the continental United States. The School’s basic and applied research programs seek to improve understanding and prediction of Earth’s geological, oceanic, and atmospheric systems by focusing on four key pillars:

*Saving lives through better forecasting of extreme weather and seismic events. 

*Feeding the world by developing sustainable wild fisheries and aquaculture programs. 

*Unlocking ocean secrets through research on climate, weather, energy and medicine. 

*Preserving marine species, including endangered sharks and other fish, as well as protecting and restoring threatened coral reefs. www.earth.miami.edu.